Array 1 1350210-1348595 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQBW02000001.1 Escherichia coli strain ECSW+07 ECSW07_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1350209 29 93.1 32 ............C...............T TAACAATATCCTGCCACTTTTCGTCAGAATCC 1350148 29 96.6 32 ............C................ TTGGTGAGGTCCAGCCCAGGAGCGAGAGCGTT 1350087 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 1350026 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 1349965 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 1349904 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 1349843 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 1349782 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 1349721 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 1349660 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 1349599 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 1349538 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 1349477 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 1349416 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 1349355 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 1349294 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 1349233 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 1349172 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 1349111 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 1349050 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 1348989 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 1348928 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 1348867 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 1348806 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 1348745 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 1348684 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 1348623 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.0 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1377098-1375910 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQBW02000001.1 Escherichia coli strain ECSW+07 ECSW07_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1377097 29 100.0 32 ............................. CTGCGGAAACTTATAACGCGGCGGAGTATACC 1377036 29 100.0 32 ............................. CGTCTGAACGCGTGGCCGGTGCTGTTCCGCCA 1376975 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 1376914 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 1376853 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 1376792 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 1376731 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 1376670 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 1376609 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 1376548 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 1376487 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 1376426 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 1376365 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 1376304 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 1376243 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 1376182 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 1376121 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 1376060 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 1375999 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 1375938 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //