Array 1 69340-68782 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKW01000024.1 Saccharopolyspora elongata strain 7K502 NODE_24_length_120028_cov_102.083, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 69339 36 86.1 37 .......T.C........A....AC........... CGGCGCTCTCAATGTCGGGAACACCACGATGACGGAA 69266 36 100.0 36 .................................... GCCGAGCTGGACAAGCGCCTGGCCACGATCACCCCC 69194 36 91.7 38 ........A..............AC........... AAGGTCCTATTCACCGTCTATGCCGACCGGAACTACGT 69120 36 100.0 40 .................................... CCTGGGACTGCAACGCCGGAGGTGGAGATGGGCAGGAAGG AGCCG [69099] 69039 36 94.4 38 .......................AC........... GTCGACACGATCATCAACTCGATCGACATCTTCTGCCC 68965 35 91.7 39 .......-...............AC........... CGGCGCTGCTGTCTTGCTGGTTGTGGGCATGCGTTCGTT 68891 36 100.0 38 .................................... CTGTCCGGGGCGGCGAACCACGCCGAGGCCAAGGCACG 68817 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 8 36 95.5 38 GCCTCAAGGGGGACCGGCGTTAGGTGCCGGTGACAG # Left flank : AGGATCGATGCCCCGGGTAACTCGGGGCCGCTGGAGTTCGTCTACCTCGAAGAGATGCACGACGGGAAGTACCTGGACGATCGCGAGGATGTGGATCTTTACAACCGGTTGTGGAGCCGTTTGGTAGGCGCAGCTCTGGACCCGGTCAAGTCCAGGGATAAGGTGCTGGAAGTAGCGAAGAGCTACTGAGTCCAGGCACATCTCCAACTGAACACGGGGGATCATCGCCATGAAGTTCACGAACTGGCGCAAGTCCTCACGCAGCATCCAGAACGACAACTGCGTCGAAGTCGGCTTCGCCCCGGGCCGCATCGGCATCCGGGACACGAAGCTCGGCGAGAGCAGTCCGATCCTGGACGTCGACGGAGCGGCGTTCGCCGCGTTCGTGCGTCGAGTGCAGGATGGCGCGTTCGACATCTGATCGGACCGACAGAAAGAGCGGGGCGGGCCACCAGCCACAGGTGGCCCGCCCCGCTCTTTCTGCGACCGGCGGATAGCTG # Right flank : GGCTTAGCGATTTTATGGGCTTTGGCCTGGGGTTTCAAAGATCGACGCGAGCGGTTACCGGTGGAGATCGCTCGCTTGGCTCTCGTTGATCTTACACTCCTGCTATTCGTCCTGTGACCTGCGGTTTTGGTTTGCGAGTGGTTCGTGCCTGGAGGTGTTCGCATTGGACTGCTCGCAGTTGGGTGACCATCACCAGCGGTGCTGGTGGTGCGCAGGTGGTTCAGCGGTGAGTCGAGGTGTGGCCGATGAAGGCGGTCGTGGTGGGGCGTAGTGGGGTCAGTTGGATGAAGTCGTCTCGGTTCAGGATCTCTTCGTTTCCCTTGAACTGGTGGACTTGGCCTTCGTCATGGTGCCAGTGCCGAAGCTTGGTGATCTTTGGCTCCGGCAGCTCTTCGTGCTCGGTCCACAGGTCGCCGACCGCCGCTTCGCCGCTGGTCAGCAGGGCTGCCCACCAGTTCGTGCCGTCGATACGCACGCGCAGCCAGCGTCGTGCGGCCCAT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAAGGGGGACCGGCGTTAGGTGCCGGTGACAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.10,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 99522-98210 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKW01000027.1 Saccharopolyspora elongata strain 7K502 NODE_27_length_117835_cov_108.524, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 99521 29 100.0 32 ............................. CTGAAGGAAGAGCTGCGGTTCACCGCCTCAAA 99460 29 100.0 33 ............................. TGGTAGCCCATCCGTCTGGCCGTCTCCTCCAGC 99398 29 100.0 32 ............................. AGATCAAGAATCGCCTGGTAGATCGTCTGGTG 99337 29 100.0 32 ............................. ACGTTCATGGTCACGATCGCGGCCAGCGCAGA 99276 29 96.6 31 ............................T CCTGGCAGCTGCATCGAGCGTCGAACTGGGC 99216 29 100.0 32 ............................. GACGCGACCGCCTCCATCGGGATTCTGGGGTG 99155 29 100.0 32 ............................. TCGGCCAGTGCAGCCGCCACGGTCGCGTCGTC 99094 29 100.0 32 ............................. CATCTGCAGCTCGGCGAGCCGGACGGCACCAC 99033 29 96.6 32 ............................G TGGACTGCGACCCTAGAAACAGTTTGCGCGAC 98972 29 100.0 32 ............................. CTGGTCGACGACGTGCGGCAGTGGGATATCCA 98911 29 96.6 32 .............G............... TTGAAACCGGGGACCGGCAAGACCACCACCAG 98850 29 100.0 32 ............................. GGGAGTGAGAACGACATGTCGCCTGGTTACGC 98789 29 96.6 32 ............................T GCGCAGGACGCCGACCGACTTGGCCAGGGCTT 98728 29 100.0 32 ............................. CTCGATCACCTACTCGTGGCCTGCAAGATCCC 98667 29 93.1 32 ........G...................T GCCTCGGTCAGCTGCCAGGCGGCGATCCGTAA T [98658] 98605 29 96.6 32 ...T......................... CGGCACGATCTAGCCGCGCCAGGTATAGCTGC 98544 29 100.0 32 ............................. GGAAAGATCAGTGACGAGGGCTCACGGGTGTT 98483 29 93.1 32 .......................T....G TCGGTGTCGGTGGCGTGGGCGCTGTCGGATGA G [98462] 98421 29 89.7 31 ..........T....A............G TCGGAGGCGCCGGAGCGGACCTCTTCGGCGC 98361 29 93.1 33 ..........T....A............. CCGCCGAGTCCGCCGGTACCCAGCTCCTGTCCA 98299 29 89.7 32 .........A....T........T..... GACCAGAGCAACGACCATGCGGATGCCCGCAA 98238 29 72.4 0 .C..A..T.A..AGT........C..... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 96.1 32 GTCGGCCCCGCGCACGCGGGGATGGTTCC # Left flank : CTCGGACGCGGCGAGGTCGATGACACCGAACCAGAGGTCAACGAGCTCTGGGACGAACGACTCGGCCAGGTACCAGGCGGCGTGAACTACGCCGACCCCACCGACCAACCCCAGTGCCCAACGACACAGCCAGAGATGGGAGAACAACACATCACCGTCATCGGCCCCGAGTTCGACGAACCGAGCGCGGCACCGGAGCAGAGATGACCGTCATTGTCCTCATCGCCGCACCTGAAGGACTACGCGGACACCTCACCCGATGGATGGTCGAAGTCAACGTCGGCGTCTTCGTCGGTAACCCCAGCCGACGCATCCGTGATCGCCTCTGGGAGCTACTCGCGACCCGTATCGGAGACGGCCAAGCCGTTCTCGTCGAACCCGCGAACAACGAACAAGGCTGGACTGTACGAACCGCCGGACGTGACAGATGGCGCCCTGTTGACTACGACGGACTCATTCTCTCCGCCCGCTCCCGCCGCTAACGTCGCTGGTCAACAAGT # Right flank : GCCGGTGCTCCGACGTACGTGCCTGCCTCCCAGCCGTGGTGTTGGCCGGGTGAGCAGGGCGGCTCGGTAACGTAGGGACCCTACGAGAGGCGCAGCTTTCGAGGAACTATCGGAGTGGCTGCGCGCTCGAATCGAACGCACCGAGACCGTCAACGGGCCTGATGCCCCAGAGCTTTGAGAACATCGGAGATCCACACTAGGGCGTAGGGCGGAACCGGTTCTCCGCGAGAGAGCAGCTGCGTGAGGTTGTTCCAGGACTCGGAGAGTTGGCCCACGGTCAGCTGTTCCGGGTCCGGCTGGGTGTAGATGTCGTAGGTCGCTTCCGGCGGGATCGACCAGAAGTAGTCCTTGTCGAGTTCGACGGTCTCGCCCACCTGTCGTTGTAGGCTGTCCAGTGCCTGGTTGAGCACCTGGCGTAGGACCTCGACCGACACCACGGACTCGTCGTCGCTCATCGTGCACCCTTGTAGATCTTGTCGATGTTCTCCCGAAATGTCTGG # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 109775-110594 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKW01000027.1 Saccharopolyspora elongata strain 7K502 NODE_27_length_117835_cov_108.524, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109775 29 89.7 29 .............GG.............C AGGCGGCCAAGATCTACAGCCCGGCTTAC TGT,A [109785,109804] 109837 29 89.7 32 .............GG.............T CGCGCGCCGGGAGCGGAGCGAGATATGCAAAA TGT [109847] 109901 29 100.0 32 ............................. TGGGTGATCTGGTACTCCACCGCCGAACTGTC 109962 29 96.6 32 ............................C CGCAGCGACTTTGCCCTGATTGTCCTGTTCTT G [109971] 110024 29 96.6 32 ............................T CGCTTCGGGACAGAGATCCACGATGTCGGCCG 110085 29 100.0 32 ............................. CAGTATCGGCGCGCGGTGTCGATGGCCGAGGA 110146 29 100.0 32 ............................. ACGTGTCCCATGAACCCGAAGCCCTGCACCGT 110207 28 86.2 31 .C..........T....-..........C GCGCAGCAGGATACCGCGAGCAGTTCCCGCC 110266 28 89.7 32 .....-..........T...........C GCGACAGTCCTGGATTCCGTGGCCGCCGCCAG 110326 29 86.2 32 ...A........T...........A...C AAAGAGCAGGAGACTGACAAGGTCAAGGCTCT 110387 29 86.2 32 ...........A.A...........C..T CAGCTCGCCCTTGCGCCATCTGTAGTTGAGAC 110448 29 93.1 32 .............A..............T TCGTCGAGGTCGACGAACCTCACCACCGCGGT 110509 27 79.3 30 .......T....--........C....TC ATCCGAAAGCGGTTCCCGATTCGCGAGGGA 110566 29 86.2 0 ...C.........AA.............A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 91.4 32 GTCGGCCCCGCGCTCGCGGGGATGGTTCG # Left flank : CGACCGTTTCGCAGCTGATCCCCAGCTTCCTGGCCGCCTGCTTCACAGCCCTCCCTTCTGATTCAAGAATCGCCTGCACCGTACGAATGCGAACGTCCGCCCCATGCCGCTTCGGCACCTCAACTCCTCACTGTTGACATCCGAACGATCACCGATCGTAGCGACATGGGCGACGTTGATCAAATAAGGTTCGTATTCGAAGTCGCCCATAGCGTTTTGCGTGGTTCAGCTTGCGAGATCAGACGGCTGTGCCGATGCGGGCCAGCCGTCATGTTTGAATGCAGGGCACGGCCCTGCTCGCTCTCGGCATGCACCCGAGAAAGCGGGGATGGTCCAAAGGTGCGTATTGCCTTGATGACATGAAGACAGTTAGGCCCCGCAATGCGGGGAACACAGCCCGCAGGACAAGCCCCTGCGGGCTCCTTCAACCCCGCCAGCAACCAGCAAGCGGACTAAACCAAATAGCCGCTATCAGCAGCTAAACACGCTGGTCAACGAGC # Right flank : AGGGTCCTTGGTGCGCATGACGAGCCCATGTCCACAACGCATCGCGTACGGTTGCCGACGTCATCGTGGCTGATGCGTCACGGAAAGGACCGACGGAGACATGACCGGAACCACAATGCAGGCACTGAGCACGGTGACCACTGCAGGTGTCATGGTCGCACTCCTTTGCACGTCGATCGAGATCGCGTTGCGCCGCCAACACGGAATGCCGTTGCGGTCGTTGCGGCCCCTCCCCTGGCTAGCCTTGGCCGCGATGGACTTCGTCGCCGTCTACCTGCTGCAACTGTCTACAGCATGGGTCCCGCAGGGATTCTTGGTGTTGTCGATGCTGTTCGGTGGATTGATCGGCATCAACATCGTCTGGGTGCTGGCCTGGCGGCGGGGTCGGCGAAAAGCACCGGAAAACGCCGCAGTTCTGGACTCGTTTGAAGTCGGCGAGGGCGACCGAGACGATCTGCGGTAGCTCGCCAGATTGCCGCTGCTACCCGACCCTACGTCGA # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCTCGCGGGGATGGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37790-37639 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKW01000030.1 Saccharopolyspora elongata strain 7K502 NODE_30_length_113451_cov_99.2246, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================= ================== 37789 24 100.0 41 ........................ TTCCCGGAGCCCTCTCAAGCCCTCGCCGGGCTAGGAAGCCC 37724 24 95.8 38 .....................G.. TTCCCGGAGCCAGCGCACGGGGTTCCCGAAGGGATCTT 37662 24 95.8 0 ..G..................... | ========== ====== ====== ====== ======================== ========================================= ================== 3 24 97.2 40 CCAATTTTGCCTAAAATTGGGAGC # Left flank : GAGCAGCGCCGACGAACACCGGTCCGCCATCGCCCGGCACTCCGCCGCGCTGGAAGCGGTGTGGTCGCAGGCCACCACCGACGACTGGGCGCGCCCGGTGCGGTTCCGCAACGGCGACCTGGGCGGGCTCGTGCACATGCGCTGGCGGGAGGTGTGGATCCACCTGGTGGACCTCGACCTGGGCATCGGCCCGCAGGAGTGGAGCAACGAATTCTCCTGCCACGCGGTCGATTTCCTGCTTCCCCGATTGCCGGAGGGCGTCGTCCTGCGGCAGGCCGACGGCCCGCGCCGGTGGACGACCGGCGACGCCGACGGCCGTCCCGAGATCAGCGGCCGGGCCCGCGACCTCGCGGCCTGGCTCGCGGGCCGGACGCCGGAGCGCTCGCCGCTCGGCCCGCTGCCGGACCTCGGCCCCTGGCCCGCGCACCCGGCCCCGATCCCGGACGACGAACGCCGCACGAACGGGTAACCGCACCAGACGACGGCGGCACGAGCACGAC # Right flank : CTTCGGCGTTAGCCGAGGTTTCTGTTGCGGGCGCGTGGTTTCGTCAGGCGAGGCCCGCGAAGAGGTCGGATTCCCAGTCGTAGGTGCCGGATCCGGGGCCTCGTTCTCCGCGGACCAGCAGGTAGTGCTCCATCGCGAACTCCGGGCGCGATACCAGCTGGGCGAAGAACCCGCCGTCGTCCAGGTTGACCTGGCTGCGGTAGTGCCGCAGGGCGGCGGTCTTGATCGCGTGGAAGTCGCGGCCGTCGACCATCGCCGTGAGCTCCTCGTCGGGCACCGTGTACGGCTCGAAGCCCTCGACGCCGGCCTCCTCGACCTGCTTGAGGATCGAACGCGGCAGCGTCGTCCAGTACACCTTCGACACCTGCCACGGCTCGCCGAGCTCCGGCGCGTAGTCCGGGTCGGCCGCCGGGTCGATGGAGTCCATCACCGCGCGGTGCGCGCCGATGTGGTCGGGGTGGCCGTAGCCGCCGAACTCGTCGTAGGTGATCACCACCTGG # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAATTTTGCCTAAAATTGGGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //