Array 1 7606-5624 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGNA010000043.1 Alcanivorax marinus strain FXH-223 NODE_43_length_18760_cov_187.981213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7605 29 100.0 32 ............................. TTCTACATGATGCGCCTGTCCCTGCCCGAACA 7544 29 100.0 32 ............................. TTTCACGAAATGACAGGCGCAGAGCTGAAGGC 7483 29 100.0 32 ............................. CATGCTGCCGAGCGCGCCAAAACGGCGGCCAA 7422 29 100.0 32 ............................. GAGCGGGACCGCTACGTGGAGGACTGGGAGCT 7361 29 100.0 32 ............................. GCGACGGTCAGCGGCGAGTTCAAGGCGCGGGA 7300 29 100.0 32 ............................. CCCTCATCGACATAGAAGCTCGCTTGGGGCGC 7239 29 100.0 32 ............................. CTCCCTCGCTTGCAGGTCGCCGTTGATTAGGT 7178 29 100.0 32 ............................. TTCGGCGACACGGTTTTGCTTGTCCTGCTCAA 7117 29 100.0 32 ............................. GCGGCGATGTCCTTGTGTTTGCCCAGCAACTC 7056 29 100.0 32 ............................. CAACTTCTGGTTGGTTTCAGCGACACACCATC 6995 29 100.0 32 ............................. GCGTTCGCTGAGGTGCGCGTCACCGAGTGCCG 6934 29 100.0 32 ............................. TACGGCGCCAAGAAAGCATTGGGCCCGGAATT 6873 29 100.0 32 ............................. GTGGACCACTCGAACATCAGCCGCTGGAAGAA 6812 29 100.0 32 ............................. TCGCCCAGGGCTCGCCGGAGTGGCACCGGGCC 6751 29 100.0 32 ............................. GGTCGCTCGGCCTCAGCAGCGGGCATTCGCCG 6690 29 100.0 32 ............................. TTTCATGGTGACCCCCATATTTATTTTGGGGT 6629 29 100.0 32 ............................. CGCCCCAGGGAGTGGAGTTCCCCTGCGCCACG 6568 29 100.0 32 ............................. TGGTTAAAGGCATCTATAATGCTGCGCTTCCG 6507 29 100.0 32 ............................. CTGGACGCCATCATCATCGACAAGAACCCGCC 6446 29 100.0 32 ............................. GCGCTCAGGTCTGGCCGGCAGATTTACGTGAC 6385 29 100.0 32 ............................. GGCGTCCGGCTGTTCCCGGGCAAAAACCGGGA 6324 29 100.0 32 ............................. CGGCCCAGTTCACCACCGGCAGCGGGCCGGCG 6263 29 100.0 32 ............................. CGCCAGATTCACCGCAAGAGCCAGAATTCGGC 6202 29 100.0 32 ............................. GGAATCCCAAATACCTTTAAGAATGCCAGAAC 6141 29 100.0 32 ............................. CGTTTCAGGTTCAAAAACTGTTCGAGCGCGAT 6080 29 100.0 32 ............................. TGCCCAGCTGCATCATGATTTCGGCCATCAGA 6019 29 100.0 32 ............................. CCGCAGCTAAGCGTTGCACGGGGTTGGGTATC 5958 29 100.0 32 ............................. GATCCAGCTTCGGCAACGCCGGGGGCGGCGCG 5897 29 100.0 32 ............................. GTGGAGTTGACGCTGTTGTCGATGCTGCCGTT 5836 29 100.0 32 ............................. ACATCGCCGAATTCCGAGCCGCCGCCCAACAC 5775 29 100.0 32 ............................. CTGGTCCACCGTGGATCTGGAGCTGTGGGGCG 5714 29 100.0 33 ............................. CTGGCAGAGAAGGGCGCAGCCGGCGAAGCGCGT 5652 29 86.2 0 .......T....A..A..A.......... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.6 32 GTGTTCCCCACAGGTGTGGGGATAAACCG # Left flank : ATTTTTGGCCCGGGTCTCGGTTGAGCCATGGAATTCCGATGTGGCACAGCGATACGGTACCTTAAGAGCCGAGAACCAGGCACGTGGTGTATCCCTTTCCGTCCTGGACATGATGATCGCCGGGCACGCCTATTCGCTAGGCTTGGTATTGGTCACATCAGACAATGCCTTCACCCATGTGCAGGGTCTGAGCGTGGAGAATTGGGCTGCCAGTCCCTGATCGGTGGCATCCTGTCTGAGTCGCGGCTTTCAACTCGCTGCCGCATCCCCCTCAACATCAAGTTTTCAATAACCCGCCGGTGATTCTCCAATCGAGTACACCACGCCCCCTCATGCTGAAGCGGACAGCCAGCGCTGCGGACCGTTCATCTGGCTGATCGCTTAGGCATCGTATCTGAAGTGGTAAAATGCCCTGTTTTGTTGGTTGTTTTTTGATCTTTTTGCTTGGTGGAAGATCAGGCCCTGATTTTCCTCTTTTGAATCAATAGGATACATTTAGA # Right flank : TTCAATCCGGTGAACCAGCTGATTCGATCAAATGTTCCCCACGGTCGTGGGTGGCCACGAAAGAACATAATGTAGTGATTCTGGCCGTTGTGTTGTTACAACGGCACGCACTGGCGGGGGTATTCGATACGAGCAGCGTAGCCCTTATAACTCAACCAGCAGCGCTTCTATCGGCCGATTCGTCCCTGCCGTCCATATAGGCGTGGCGCCAGGGTCAACGGTGCTCTGTTGTGATCTGCGTCACAGAGCGCTAGATTATGAGCTTGGCGACGTGGCTTGGGGCGATGTCGTCAATGGTTCCGCGTGATGGGTCGAAGAACCCAGCGATAATAATACCTCGCCGTCGGAAAAAGCGGCTAAAAGAGGCAAAAGGGATTTGTGATCGGGATACACGCTACTGATTGGCCGTCCTGCTTTCTGTATTGGGGTAAAGCGCGGCCGGCTTCCGCTGAGGGCGCGGCCTACCACCTGCTACCGTTCCATAGTCTGGACGTGGCGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACAGGTGTGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10558-9003 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGNA010000043.1 Alcanivorax marinus strain FXH-223 NODE_43_length_18760_cov_187.981213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10557 29 100.0 32 ............................. ATGCATTTATTGACGCCACGGGCCATCATTCC 10496 29 100.0 32 ............................. CGCGACCGCCGAGTTCATTACGCTGGTAGAGG 10435 29 100.0 32 ............................. AGACCTCGACGTTTAGCTTCATCATAGGGGAT 10374 29 100.0 32 ............................. GCCATGGGTATTCCGGCCATTTGGGCGGCGGT 10313 29 100.0 32 ............................. GAGGCCAATAAATTCACCGGCGTTACCCGGGG 10252 29 100.0 32 ............................. CACATTCGAGAGGGGCTGGAGTAATTATGGCC 10191 29 100.0 32 ............................. GCCTCAGAGATGATCGCCTCCGCCCGGATGGC 10130 29 100.0 32 ............................. GCATACCAGAGCAAAAAGGGCCCATGGATCAA 10069 29 100.0 32 ............................. CTCGCGACGCCCTTGTTCAGGCCCTGCCGGAA 10008 29 100.0 32 ............................. TCGCAAACGAAGCTCTGAAAATAGTTATGATC 9947 29 100.0 32 ............................. CGGTAAACGGAATGCCGAAATAATCAGAAAGC 9886 29 100.0 32 ............................. CTGCTGATCGGCGCTTTGGGCAGGGTGATAGC 9825 29 100.0 32 ............................. GCTCCGGCCCGGTCTCGCCGCTGACCAGGGCG 9764 29 100.0 32 ............................. CGCCAGGGGCAGCAGGGCGCCCAGCAGGAACA 9703 29 100.0 32 ............................. GTCTCGCCGGCCCAGGCCAGCAGCAGGGTCTC 9642 29 100.0 32 ............................. ACGGAACGCCAGTACGGCGGCGACGTGATCAA 9581 29 100.0 32 ............................. TCTTATCGTGACGATTCCATAGAGGATTACCG 9520 29 96.6 32 ...........A................. TGCCGGCCCAGCACCTGGGCGGTCTCCGCTAC 9459 29 96.6 32 ...........A................. GGCTACGTGTCCGTGCACGAGGGCGCCACCCT 9398 29 96.6 32 ...........A................. TCCCGGTTGATTGAGGCCGCCATCTGATAGGC 9337 29 96.6 32 ...........A................. GCCGCCTACCAGAACTCCATCGCCCAGGGATG 9276 29 89.7 32 .......G...A..C.............. CTGCACGCATAGGGCACGCACCGCCTCGGCAG 9215 29 89.7 33 ..A........A..C.............. GCCGATTACACCCGGGCCCGGTGGCAGGTGGAC 9153 29 96.6 32 ...........A................. AACGATGTCGGCGACTGGACCTCGGAACAGTC 9092 29 93.1 32 ...........A.....C........... GGCTCTGATACGGCTTGGGCTGACGCAGCAGA 9031 29 79.3 0 ...........A..C.......CA...TC | ========== ====== ====== ====== ============================= ================================= ================== 26 29 97.5 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : CAGGGCGAACCCCCGCGCCTGTTTCTGATCTACCCGGAAGGCAACTTCATCGAATGCACCCCGGACACCCCGTACTTTCAGATTGGCGAAACCAAATACGGCAAACCCATCCTCGACCGGGTGATCGACTACCACACCTCCCTGGACGACGGCATCAAATGCGCCCTCATCAGCATCGACTCCACCATCCGCTCCAACCTCTCCGTGGGCCTGCCCCTGGACGTCCTGCGCTACCGGCGCGGCAGCTTTATCGCCAGCGAACACTTCAACCTGGACGAGCACCACGAAGGCTTCCACCAGCTCGGCGAAGCCTGGTCCGTGGGCCTGCGCGATGTGTTCCATCGCATTCCGAATTTGAAGTGGTGAGCGGCGACGCCTCGTAAAACCAGCCGGCCGGTGTGCCGAAACCGGCCAGTCTGGCCGTTTATTTTTTGATCAAATTATCTGGTGTAGATTCAGAGCCCAATTTTATTGTTTTGAATCAATAGGATACATTTAGA # Right flank : CGGATGCTGTAAAACATCCATGGAATACTTTAAGGATAAATTTCGGCTTATTTAGATTGCTCTTTGCTGGTTAGAGGAATGTTCATGGTTACGCGAACGAAACTCGTGCGGTTGGGCAACAGTCGCGCTGTAAGAATCCCCAAAGCGATTCTGAATCAGGTGGGCATGACGCTTGGCGACGTGGAGATCGAGGTGCGCGGTCGGGAGTTGGTGATTCGCCCGGTGGCGACAATGACGTTGAGTGAAATGCTCAAAACCGTCAGCCCTGGAGATGCGGCTCTCACCGTCGAGGACCGCGACTGGTTTGATGCCGCCCGGGCGGGAAACGAGGTGCTGTAGTCGTGGCGTATACCCCAAGCGCCTGGCGGTCGATCTTTGCCGCTCCCCGGATGGCTTGCATTACCTCCGGGAAATTGAGATATTACATGATATATACCATCTACGTGGGAGCTGCCCATGACCGATACAGCAAAAGTATTCATGAGCGGGCGGAGCCAGGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //