Array 1 9183-12691 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVK010000023.1 Erwinia amylovora strain Ea433 Ea_433_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9183 29 100.0 32 ............................. CGGGCGAGTTTTTCAGGATGCGTCTCATTGAA 9244 29 100.0 32 ............................. CAATTTGTATACAGTCGAGAACGTGCCTTATG 9305 29 100.0 32 ............................. AACCTTTTACCATTGTCATAACAATATCTTCA 9366 29 100.0 32 ............................. CCAGGGGAGTTTCTTATTTTCCGGAGAGAATG 9427 29 100.0 32 ............................. TACGTCAGCGGCATTATAAGGATTTACACGGA 9488 29 100.0 32 ............................. CCTTCAGGCCGCTGGATAGATGCTAACCCACC 9549 29 100.0 32 ............................. CCGGCACCAAATGCTTATCACTGCCAGCGGCG 9610 29 100.0 32 ............................. ATTTCTGGATTAACACTCAGGCGGCTCATGAC 9671 29 100.0 32 ............................. GTCATTCATACGGGCTATACCGTCCTCCAGAT 9732 29 100.0 32 ............................. GTCAGCAGCTGTAATAATGCGCACCTTTTCCC 9793 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 9854 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 9915 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 9976 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 10037 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 10098 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 10159 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 10220 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 10281 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 10342 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 10403 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 10464 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 10525 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 10586 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 10647 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 10708 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 10770 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 10831 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 10892 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 10953 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 11014 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 11075 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 11136 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 11197 29 100.0 32 ............................. TCTTTATGACGCAAAGCAAGCCTCAGCCGAAC 11258 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 11319 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 11380 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 11441 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 11502 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 11563 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 11625 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 11686 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 11747 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 11808 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 11869 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 11930 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 11991 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 12052 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 12114 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 12175 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 12236 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 12297 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 12358 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 12419 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 12480 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 12541 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 12602 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 12663 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 58 29 99.5 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATGATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22154-22482 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVK010000023.1 Erwinia amylovora strain Ea433 Ea_433_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22154 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 22214 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 22274 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 22334 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 22394 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 22455 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 178862-184350 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVK010000007.1 Erwinia amylovora strain Ea433 Ea_433_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 178862 29 100.0 32 ............................. GCGCTGGAGTCGTACAGAAAAGAGTGGGACGA 178923 29 100.0 32 ............................. GTGTAGGTCTGGATCATCAGGTCACTGCCCTC 178984 29 100.0 32 ............................. CTGGGTAAATACGGTCTGGTTGCTGCCCGCCA 179045 29 100.0 32 ............................. ACCGCGAACAGCTCAATCTTCGTTATCAGCAG 179106 29 100.0 32 ............................. CTGGAAGATGATATTCAGGCCATCACGCAGGG 179167 29 100.0 32 ............................. ATGGTGTCGCAAAGTGTCGGGCCGTGAAGGTA 179228 29 100.0 32 ............................. TTTTTGTACTGTGAGAAAACGCTGTCAGAGGA 179289 29 100.0 32 ............................. CGGCGCTGTCTATCCCCTGCGCGATCCCCTTT 179350 29 100.0 32 ............................. ACCCAGCTAGGGAATGTAGGTCTAGTCATGAA 179411 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 179472 29 100.0 32 ............................. GACGCTATAAGCCAGGCAAAAAGCCAGTATGA 179533 29 100.0 32 ............................. CCAGGATAGTCCGTTTTGATACCGTTAATCAG 179594 29 100.0 32 ............................. CGAAAAACATTGCACAAACCGAGCAGGTGGGG 179655 29 100.0 32 ............................. GTATTTATTTTTGCTCTACTTGCCGGGATGTC 179716 29 100.0 32 ............................. CCGGTTAACGTGCTTAAGGGCATCACTGAGAT 179777 29 100.0 32 ............................. CAATATCTTTTGTTTGCGTATAGATATCCTGC 179838 29 100.0 32 ............................. GTCAGGGAACTGACCAAAACCAGCTTTGAAAT 179899 29 100.0 32 ............................. TCCTCCTGCAGGCGGAGCATGAGGATAAAGTC 179960 29 100.0 32 ............................. TTATCACATTGATTTTATGAAATTATTTAATG 180021 29 100.0 32 ............................. AGCGGGACAGGTATATCGCATTAACACTGGCA 180082 29 100.0 32 ............................. TCAGTTCATTGGGCAACAGAACGCATCAACAT 180143 29 96.6 32 ............................T GAGGTATGTACTGCATCGTGCCCTGAACAAAT 180204 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 180265 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 180326 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 180387 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 180448 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 180509 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 180570 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 180631 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 180692 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 180753 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 180814 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 180875 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 180936 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 180997 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 181058 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 181119 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 181180 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 181241 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 181302 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 181363 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 181424 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 181485 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 181546 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 181607 29 100.0 32 ............................. TGCTGAATACCGGTAAGCCTGGCTCTATCACC 181668 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 181729 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 181790 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 181851 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 181912 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 181973 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 182034 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 182095 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 182156 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 182217 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 182278 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 182339 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 182400 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 182461 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 182522 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 182583 29 100.0 32 ............................. GGAGAACGGCGGTCAGATTCCGGTAAACTGCA 182644 29 100.0 32 ............................. CCGGAGACAGTGTTGAAGCCGCAGTCACTCTA 182705 29 100.0 32 ............................. AGTGCTGAGTGTGTTAGTAGACAACCGGCCTT 182766 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 182827 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 182888 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 182949 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 183010 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 183071 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 183132 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 183193 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 183254 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 183315 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 183376 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 183437 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 183498 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 183559 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 183620 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 183681 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 183742 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 183803 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 183864 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 183925 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 183986 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 184047 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTACGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 184139 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 184200 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 184261 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 184322 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================================================== ================== 90 29 99.8 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : ACCAAAGGCGACCATCAGGTAGAACTGGCCTTGCGTTCCCCGCGTGAGCAGGGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //