Array 1 133539-137948 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIPQ01000002.1 Aliidiomarina taiwanensis strain AIT1 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 133539 28 100.0 32 ............................ TTCATAAATTACAGCACAGAATTGATAACTGC 133599 28 100.0 32 ............................ TTGCGGAATGAAGTAAATAATCGTTCCCTTGC 133659 28 100.0 32 ............................ ACAACCGAGTTTTCATCTTCTTTCAGCGCAGA 133719 28 100.0 32 ............................ ATGACAGCCAAAGCTTTAAACCGCCACCTGAC 133779 28 100.0 32 ............................ AGTTGCGTATCCGTGATTTAGTTGCAAACATC 133839 28 100.0 32 ............................ AGACCCTGAACCTATTCCCGATAATGCTTTAT 133899 28 100.0 32 ............................ ATAGAGGCTGTTGCTTTCGTTTCGCATCGTAA 133959 28 100.0 32 ............................ CCGCACAAACTGAACATACTGCGTAGGCATGG 134019 28 100.0 32 ............................ TAACATGAGCATCAAGCAGCTTTGCATCTTGT 134079 28 100.0 32 ............................ TAACTACTTGCTAAAAGGTCAGAAAGTCATGG 134139 28 100.0 32 ............................ TTCGCGCGCTCAATCACTTCTTCGATGATGAT 134199 28 100.0 32 ............................ TCAAAAAAGATTTGTCGGAAAGTTCGACGAAC 134259 28 100.0 32 ............................ AAACTCACGCTCGAACATCTCGGCGATTTCTG 134319 28 100.0 32 ............................ TTCTTGGTCCATCTACTTCAACGGTGAAGTTT 134379 28 100.0 32 ............................ AATGGCGGTGGTAAAGCAAAAGGTTCGAATGG 134439 28 100.0 32 ............................ AATCGGCGTTGATGTTATAGCGTTATATGACG 134499 28 100.0 32 ............................ CGTCAACGCATTGATATCTTGCTGAATCTGAA 134559 28 100.0 32 ............................ GAAACTCGCGGCAAGAAAAAAGAGTACGTGTT 134619 28 100.0 32 ............................ GGATTAAAGTTGACCCTGACACGCAAGAAGAA 134679 28 100.0 33 ............................ CAATAGGGCTTTCACAAAAGAAACACTCTACCG 134740 28 100.0 32 ............................ TGTGCGCCCAGTCCGAGCGGTGCTAGTATCGG 134800 28 100.0 32 ............................ TTCGATACGCTTAAACACGTACTCTTTTTTCT 134860 28 100.0 32 ............................ AGTGATGATAAACTCGCGCATCTTATCGAACG 134920 28 100.0 32 ............................ GTATGAATCGACCACCTCATCTCCCACCTCTG 134980 28 100.0 32 ............................ AGATTAAAATCCTAGCCACCACCACCATAGAC 135040 28 100.0 32 ............................ ACCTCACCAACCGGCGGTAACCACCCATTATC 135100 28 100.0 32 ............................ TAAAAGCGGATCGCATGATGGAAGAAAACTTG 135160 28 100.0 32 ............................ TAAAAAAGGATACAAAAAAGCACAATCGGCTG 135220 28 100.0 32 ............................ ATTTGTTTTTAAAGTGGCAGCGAGAGCAGCTA 135280 28 100.0 32 ............................ TCAACCACTGCCACATCAATTAAGCCCGTAAA 135340 28 100.0 32 ............................ ACTTCGGCGATTTGATTTGTACCGATTTGGAT 135400 28 100.0 32 ............................ GAAGGAAAAGGTAAAGGCATCGGCAAACCGTG 135460 28 100.0 32 ............................ ACGGGGCAACACTAACTACGGCAGGGCGCACG 135520 28 100.0 32 ............................ ATCAAGCTCATTCAGTGTTTGCTTTAGCTTTG 135580 28 100.0 32 ............................ CATGCAGCCAAGCCTCGAAAATCAGCGGTAAC 135640 28 100.0 32 ............................ CGACGAAACCCGCATCGACATTATTGGCACGA 135700 28 100.0 32 ............................ TCGCAGGATGTCGGTTTGTTGAGCAGGGAGAA 135760 28 100.0 32 ............................ AATCGTTTTTATTACTCATCATTCTCTCTCCG 135820 28 100.0 32 ............................ TTACCGATAGTGATGGAGCGAACAATAAATTC 135880 28 100.0 32 ............................ AGTCACTACATAAACCTTGCTATGGTTCGTAA 135940 28 100.0 32 ............................ AGTAAAGATCGCACGCTTTGTGGCAATGATCA 136000 28 100.0 32 ............................ ACACCCTCGACAGTAACTGGGAAAGTCACACC 136060 28 100.0 32 ............................ GTCACGGCAGAACCAACCAAAAATTTAACCTT 136120 28 100.0 32 ............................ ATTGCAGAGTCAGGTACGGTGACTGTTGATTC 136180 28 100.0 32 ............................ CTGCAATGCTGTCTTGTTAGCTTTGACAATAA 136240 28 100.0 32 ............................ CACTAAAATCCATTGCAGATAGTAACAAGCGT 136300 28 100.0 32 ............................ AGAAAGAAGAATTTTGTATGTATTCATAACAT 136360 28 100.0 32 ............................ AGACGCCGATCCGACTGCCCCGCCTATCCCTA 136420 28 100.0 32 ............................ AGACGGCGAAACTATTTACTGTTACGCTACAG 136480 28 100.0 32 ............................ ACCTTTTTAGTTAGTTAAAATAGGCGGCTATT 136540 28 100.0 32 ............................ CATCGATTTGCTAGTGACAAGCGTTTAAGCTG 136600 28 100.0 33 ............................ CAGTGAAAAGTAATAGCGATGTGGCTGCTAGCG 136661 28 100.0 32 ............................ TTAAAATCCGCTGCACTCGCTTAGATATAGCG 136721 28 100.0 32 ............................ TGCATCTGACATAACGCCGATGGCCGCCGATG 136781 28 100.0 32 ............................ AAGTGGCAGTAATCGTGCCGACCGCTTTCCAG 136841 28 100.0 32 ............................ ACCCGAATCTATACCTACAACATGAAAACTAT 136901 28 100.0 32 ............................ TGCCGCTTCTTTACTATCTAATTCAACGCCTG 136961 28 100.0 32 ............................ TGCCAGGGTTCCGAACAGCGATGATTATATTA 137021 28 100.0 32 ............................ TGACTCAACAACGACTTCATAACGCCGCACAA 137081 28 100.0 32 ............................ AACCTTTTTTAGATTTTAAATAATACATATAA 137141 28 100.0 32 ............................ ATCTGAAAAACTCCTAGTGTTTCCACACTTTA 137201 28 100.0 32 ............................ TCGTCCACGGCTTCTAAAATCTCTTGCTCAAT 137261 28 100.0 32 ............................ CATTCGTGGATGCTCATCAAGTGCCAGCCAGC 137321 28 100.0 32 ............................ GCTTGCACGTAAGTTTTTGAGAACTCGCTGAA 137381 28 100.0 32 ............................ TTTCAACTCAACTCAAGTTTTAGAAATAGACC 137441 28 100.0 32 ............................ ATGTACGGAAGCGAGCGAAGGAGTCTCCCTGA 137501 28 100.0 32 ............................ AGACGATTGTGCTTGCTGAGAACTGGGCAGGC 137561 28 100.0 32 ............................ TATGATTATATCTGGAGGTCGTAAGTAATGCC 137621 28 100.0 32 ............................ CGAAACAAACGAACAGGGGCGCGTCGTCCACA 137681 28 100.0 32 ............................ TTAAAAACATATGCCGTTCGCTCTACAAGAGG 137741 28 100.0 32 ............................ TTACTAATAGGGGGGTCTAATACCTAAAGTCA 137801 28 100.0 32 ............................ CATCATTTCGCATGTGGTGCAGTTCTTCACGA 137861 28 100.0 32 ............................ GTTGGCACCTGTTTGAATTGATGGTTGTGAAG 137921 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 74 28 100.0 32 GTTCGCTGCCGCACAGGCAGCTTAGAAA # Left flank : TTCAGGCGGTCCCTTCTGAAGTAAAAAGCCATGTAGTTGTTAGCCGTTATCAACCAGTAAAAAACTTAGAAAGAACAACCCGTAGACTTGCAAAACGTCAAGGGATTAGCTTTGAGGAGGCATTAAAACAACAGAACCAACGTTTTGCAGAGCTAAATGGCTACTCATTAAAACAAGCAGAGGAGCACTACCATAACCCTGTAGTTAAGGAGTTCCCATTTATCAAAATAAGTAGTTTAAGCAGCGGTAATAACTACTCACTGCATATAGTTCAAAGAGCAATGGCTAAAGAATGCAAAGGTGACTTTAATACTTATGGCTTGAGCAATGGAGCAACAGTTCCATATTGGTAGCAGAGAAATAAAGTAAACACCCTTTTTTAGCTCTTTAAAAAATAGACAGACAAAACAACAAGTTCCAAATCAGCCTTAAATATTGGGTATAATGAGTAAAAACATGCAGTACACTGTTACTGCATGTTTTTTTGTTCAATTTTTATT # Right flank : AGTTAAGATGAGGTGTACCCATCCGCTGCAGCTAAGGTAGGTATAATTTTTCGACTTTTACCTAAACAAAACGCCCAACCCCAACTATACTTATTAAGCTAGCTTGTTTTTTGTACGGGTTAGCCAACCATTCATGTTGGAGGTGCAGTATGCGTAAACAACATATATTACTCATAGCGGCGGTTTCTGTTGCTATGGCGGGTTGCTCGTCTATGTCGAAGAACGAAAAAATGAGTGCTGTAAATGCAGAACATTACGAAGTGGACTGGGAATATGTTTCCATGGTTGAAAAAAGTAATCGTAATGGTGCTGCTCCTGCTCGGGTTATTTGGGTAAACCCACCAGTTAAAAAAACCGAAGAAGGCCGCTAGTCTCGGCGCCAGTTGCGTTAACACTATGTTACAAGGACGAGCATTTTTGCTTGGCATATGACGTGCTTAGCCCCTACACTATTGGTTCTAATTTGTTGGGGGTAAAACGTGAGTGAACTGGCTGAGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //