Array 1 85-449 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMCC02000308.1 Enhygromyxa salina strain DSM 15201 ES-Contig_310, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =========================================== ================== 85 31 100.0 43 ............................... ATCAGGCCCAGGCATTCAAAGCGTCCGGCCCCACTTAGCGGCC 159 31 100.0 43 ............................... ATCAGGCCCAGGCATTCAAAGCGTCCGGCCCCACTTAGCGGCC 233 31 100.0 24 ............................... ATCAGGCCCAGGCATTCAAAGCGT Deletion [288] 288 31 93.5 40 ....C.........................A CCGCAACGGCCCCGGGCCCGATGTCACGGCCCGAACGGCC 359 31 96.8 29 ..........T.................... ATCAGGCCCCGCACCGGCCCCGGAAGCGT 419 31 80.6 0 ....C..T.G.....T........T...C.. | ========== ====== ====== ====== =============================== =========================================== ================== 6 31 95.1 36 CCGGGCCCGACGTCACCGAGTTGACCTTAAG # Left flank : TGGGAGGGGTGGGTGGCGGAGCAGATCTTTGCTTATTGAACAGCTTGGAGATTGGTCTCAACGGCCCCGTTGGCCTCAACGGCCC # Right flank : ATCAGATCTTCTTCACTCACGATAGGCATTCGAGAGATCGAGCCGGAACTCTGCAAAGCTGCCGTCGCCGGGCCGATGACCTTCGCGTGGCCACCTCCGCGCAGAAGCAAGCCAGCGCCGCCCGTCGGGAGACCAACCGGGCCCGGGGCAACGCTCGTGGCTACGAGCGCGTCCGCGCCCGCCCGATCTACCCCGGCCGCCGCTA # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGGGCCCGACGTCACCGAGTTGACCTTAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 3141-5228 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMCC02000125.1 Enhygromyxa salina strain DSM 15201 ES-Contig_125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 3141 36 100.0 36 .................................... GAGGAATAGCCCAGGCGCTGGTCAGGGTTGATGAGG 3213 36 100.0 40 .................................... GTTGATCAGGGCCAACTCATCCTCGCTTGCCCAGTCGAGC 3289 36 100.0 42 .................................... ACGAAGCTGGCGAAGTTGGCCAACGGTACAAAGTCGTCGCAT 3367 36 100.0 38 .................................... ATGTAGGCGGCGACAGTCCGGTCTGTGCTCGGCTGCAG 3441 36 100.0 42 .................................... CAGCCAGGCATCAACGGCAGCGATCGCCTTAGCTTGTATCAC 3519 36 100.0 37 .................................... CAAAACAGCTGCCCAGCGATGACCAGCATCATGATTA 3592 36 100.0 41 .................................... AGCGTCTCGACAGAGCGTGCCCAACCCCAGTCGATCGACAC 3669 36 100.0 39 .................................... TCGTGGCTCGTCGGCAGCGGAGAACTCGACCAGAGCCCG 3744 36 100.0 35 .................................... CGATCGCTGGGCTTCGTTTTCCCCGGTTCCTGAAC 3815 36 100.0 41 .................................... TTCGAGTGCGATTTGCGCCCGACCACAACCTCGGTGGATCT 3892 36 100.0 43 .................................... GGCGCGGGCCCCGTGCTCGCCGTGCTTCGATTCTGTGGCCCAT 3971 36 100.0 35 .................................... GCTTCCAGCACAGAGATCGTGTTGGCCAGGTCGGC 4042 36 100.0 35 .................................... GGCATGATCGGGAGGGCAAAGCCAGCGGCTAACTT 4113 36 100.0 36 .................................... ACCCACAGAGGACCCAAGACCATGCACATCGGACAA 4185 36 100.0 35 .................................... GACAACTGGCGCAGCGCGGGCATCACCACCTGTTG 4256 36 100.0 35 .................................... GATCAGCTGACGACCAAGCCGGATCGAGTCCGCGT 4327 36 100.0 38 .................................... TGGATCAGGACCTCGTTTCCGGCCTCGAAGTGGTCAGC 4401 35 94.4 41 .................G-................. GCTTCAGCACCTCCTCGCCCGCGACTCCGTGGATGTCGGGG 4477 36 100.0 40 .................................... CACGTCGACGAGAACGAGCAGGTGTTGACGGCGAGGGCCT 4553 36 97.2 40 ..............C..................... CCCTCAAAATCACCTTCGTCGAGCGTCAGGAAATCCTGAT 4629 36 97.2 41 .....................T.............. CTTGAGTCCGTCGCGCTCGGCCGTGGCGAACCGATACTCAC 4706 36 100.0 35 .................................... CGCAGCTACAAGCCCGGCGGCGACACGACCGACAC 4777 36 100.0 34 .................................... AGCAGGGTGCGAAATGTGTTGAGCATGGTCTTTG 4847 36 97.2 39 ....T............................... GCGTTGACCCCCACCCATCGATCGCGGGTAGCGTCCTCG 4922 36 100.0 38 .................................... AGCACCTTGCCGGACGCCAAGACCCGGACGCGGAGAGC 4996 36 94.4 35 ..............C....................G AAGATCGGCGCGACCGATCAGCTGCTCGGGCAAGG 5067 36 94.4 15 ..............C.................G... CCGGGGCCCTCTCGC Deletion [5118] 5118 36 97.2 38 .............G...................... GTCTCGCGTAGCTCGGTGAGCTCGGCGTCGTGCAGGAT 5192 35 83.3 0 .............G..............ACC..G.- | CC [5222] Deletion [5227] ========== ====== ====== ====== ==================================== =========================================== ================== 29 36 98.5 37 CTCTCCGCCTTCGCATGAAGGCGGCCCCGTTGAAGC # Left flank : TCGGCTCGTGTTGGCGGGCCGGGGTGGGGGCTGCGGAGATGAGTCGGGGTAGTTTTGGGGTAGGGGGGGGTACCCCAAAACTAAGTTGGTTCATGTTGTTGGGGGGTGTTGGGGGTGCGGGTGACTGTGTTGACTCGTGTTCGAAGGGCGGTTGGGGGGTAGCGGGAGGAGTTGGGAGTGTGTGGGGGCGGGAGTCGGCTGTGCGCTTTTGTCTTTGGCCTGCCGCGACTGGCGCATGCTGTGTCTGAGGTTGGGTGATGTTCAGTATTGAGCTGGGTTGGTGTTCAGTGTAACTGTGGTGGCAGAGCTGCACGCGGGCTCTCGTGCAGCTAACTCCCGGTCTTGCGTGCATTGTGCGGAATTCGGGATGTTTTCCTGAGGGGAAACGCTGTTTGAAAAGTGGCTGGGGGAACATGAACAGCGGTAACCTGCGCGCGGTATCGCCCTGCGTGCAGGAGGGGGTGGATTGCGTAGTGATTCTGGTACGTTGCGAGCGTGCT # Right flank : GCACGGCTAGAACCGCCCCAGAAGCCCCCGTGCTTCTGGTGTATCTGCCCTGCAAGCACGGCCCGGGTCCCACCCACGAGCACGTGCAGGACTTGCCGAGCGTCCGGGCCTGGCCCATGTGCGACAGGATCCTACCGTGGACCCATGTTCATCAAACCCACCATCCTCGCAATCCTCGCCGCTTGCGGCATCAACTCCAACCCGCCGGACGCGCCCGACGAGATCGAGCCCCCGGATGACCAGCAGATCGACCAACACTTCTGCTGTCAGTCCGTCAGCGCCAAGCCGTGGAGCGGCGAGGGCTGCGTCACTATCGCCGTGGAGCACATCAACACGTGCGCCAAGGTTCTCTACTGCCCCGGCAAGTGGATCAACGACGAGGGCGACGTCACATGCGAGTGAGCGAAGCCGGGCGCGCAGCAGCACTCACCACTCGCCATGCTCACCGGCTGCGCCCAGCCCAGCCCCCAGTCCTGCGCGCAGCCGGCCTCGCCACCGCC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCCGCCTTCGCATGAAGGCGGCCCCGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.80,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 278-482 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMCC02000079.1 Enhygromyxa salina strain DSM 15201 ES-Contig_79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================================== ================== 278 41 100.0 36 ......................................... CACCGAGCCCCCTTCCAGGCCTTCCAGGGGTCCAAT 355 41 92.7 46 ...A........................A........A... GTACCCGTCCGCCGAAGCCACCCGAGCCCCCTTCTAGGGGGCCACA 442 41 97.6 0 ......A.................................. | ========== ====== ====== ====== ========================================= ============================================== ================== 3 41 96.8 42 CATGCGGATGCGAACAGCCAGCCCCGAGGAGCGAAGCGACC # Left flank : GATGGTCGCCCGATGAACCTGTCGGACACGTTGGACTGGATGTTCATCGCCGACAGGAGCCGGGCGAGGGGCACGTGTGAGGGGACGACCCATTGAGCGATTGCCCCTCGCCGTGGGCGCTGCGACGGGCCGCTGCGGTACAGTCACGTGTTCGATTCGCCGGCGCCACCCCGAGGAGCGAAGCGACCAGCCGCGTCAGCCGCGTCAGTCGGCGAAGCAACCGTACCCGTCCACCGAAGCCACCCGAGCCCCCTTCCAGGCCTTCCAGGGGTCCACAC # Right flank : CAGACGCGAAGCGGCTGCAGTCGGCGAAGTCTAAGGTCTATGTGGGGGTCATAACCAGCTAGTCTCCCGCGGGTGACCTGGCTCGCGCTCGCGCTGCTGCTTGGACCGGCGACGCCGGAGACCGTCCCCGTCCAGCGACCTGGCGATCCCGTGACGTGGGTGTTCGAGTGGCGCGCCCCCCCGGCGTGTCCGGGCCGCGAGCAGCTCATCGCCCGCATCCACGAGTACCTGCCGCAGCTCGAAGATCCACCCGAGCAGGCCGCCCACGCGATGTTGCGGATCTCCGCCGAGGTCGTCGTCGCGGGCGACACGTGGCAAGCGAACGTCCGGGTCAGCGGGCGCGACGGCGATCAAGCGCGCAGCTTCTCGGCGCCAAGCTGCACCGAGCTCGCGGACGCGAGCGCCTTGATCGCGGCGGTCGCCCTGGATCCCGTGCTCGCCGCGCGCAGCGTCGCGCTAACGCTCGAGCCAGCACCCACGTCGCCGCCCGACCCAACTCC # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATGCGGATGCGAACAGCCAGCCCCGAGGAGCGAAGCGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 24976-16229 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMCC02000007.1 Enhygromyxa salina strain DSM 15201 ES-Contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 24975 36 100.0 37 .................................... GACCCGAACGGCGAGCGCGACCCGTCGATCCTGGTCT 24902 36 100.0 39 .................................... TTGGCCATGTACAGTGGGGACAGGTCGGCCAAGCATCCC 24827 36 100.0 37 .................................... TTGCGAGCGCCCGCCCCGAGCGCGTGCACGAGCAGCC 24754 36 100.0 38 .................................... GACGACCTCGGGGGCGACGGTGATGCGGCGCACGAGGT 24680 36 100.0 36 .................................... GACGTGGTCAGGTGCACGCTGATCCGTGCCCACCGA 24608 36 100.0 40 .................................... GCCCCGCGCTTGCTGACGTGGCGGCGCAGAATGGGCTGTC 24532 36 100.0 39 .................................... GAATCGAAGGGGTCGCAGACAGACCCGGTGGGCGGGTTG 24457 36 100.0 39 .................................... CAGAACACCCGCCCCCGCCACGGGAACTCGAGCCCGGTC 24382 36 100.0 40 .................................... GGTCGAGACGCGAGCGGGCCTGAGCTGGACGGGTGTACGG 24306 36 100.0 38 .................................... AACATTGCGTCGCCTTGCAATGATGTTGATGGGTCCGC 24232 36 100.0 34 .................................... GGCTTTCAATCGTTCTTGCAGCAGTTCAACGCGC 24162 36 100.0 38 .................................... ACCCCCACACTCGAACCCTGACCCACCGGCCAGACGAG 24088 36 100.0 40 .................................... GTCCGGGCCTGTTGCTGACTTGTGACAGCGCACCCATGTG 24012 36 100.0 38 .................................... GAACGCCCTGCCGCGGCCCATGCAGGCGCTCGACGCGA 23938 36 100.0 42 .................................... CCTGACCTGTTGGCGCGCGACGTACTCGTTGTTGAGTTGCTT 23860 36 100.0 41 .................................... GCTTGATCGCCCGTGCCGTCGAGTCGCACGACGAGCGAGTC 23783 36 100.0 38 .................................... CGCGGGGGCGCGGCCGCTGGCGCCAGCAGGGTGAACGC 23709 36 100.0 35 .................................... ACCCCTACAGGGTGGCGACCAAGATCGACCGGTTT 23638 36 100.0 35 .................................... GCGCGTGAGGGCGTCGAGATCGACGATGAGGTAAC 23567 36 100.0 37 .................................... GGCTTGGGCAGCCTGACCCGCGGGTTTCGCCCCTCAC 23494 36 100.0 41 .................................... ATCTAGAGGGCATTGGTTCCAGGACGAGCGTACGTCGAGGC 23417 36 100.0 35 .................................... CTCATCCCCGCGGGGATCGATCCCCGCCAGACGTT 23346 36 100.0 39 .................................... CCACAGAGCAGGTCTCCCAGTTGTTGCATGGAAGGTGAA 23271 36 100.0 37 .................................... CCAGCCGGCCAGTGGATGCAGCAGCGCACGACGCCGA 23198 36 100.0 41 .................................... GGGGGCCACCGTGACGTGGAACGTATCGAGCAGGGTCGGTC 23121 36 100.0 36 .................................... ACGAAAACGTGTTGCTAAGTGCGGTTCGCCAGCAGG 23049 36 100.0 40 .................................... TGTCCACAGCCCATGGCCATAGACGTGCTTGCGCCAGCCC 22973 36 100.0 41 .................................... AGATCCGCCGTGACCTCGAGCGTGCGGCCGTTGCCCGTCCC 22896 36 100.0 35 .................................... CGACCGACGCGGGCGGCGGCGCGCAGCTGCTCGAG 22825 36 100.0 36 .................................... AGCGCGGCCATGCGCGGGCGCGGCATCTTCCGCTCG 22753 36 100.0 36 .................................... GGCTAGCCGCTTTTGTGCCGCTACCTCGCGCTTCCT 22681 36 100.0 34 .................................... ATTTGCTAGGAGCACCATGAAGTACCTAGTCATT 22611 36 100.0 44 .................................... ACGTCCACGAGCGTGAGCGCCTTGATCGATCCGTTAGGCAGGGT 22531 36 100.0 39 .................................... ATCGCCGTATCGACCCAGTGCATGACGGACGGCAGACCA 22456 36 100.0 38 .................................... AGCCCGCTTGGCGCCGCGACGACGTCGAGACCCAGGCT 22382 36 100.0 36 .................................... AGGTACCAGCTCGGGTCCGTCGTTGGTGCAGCGTGG 22310 36 100.0 42 .................................... CCAGGTCAACACCAGGTGGCACACGGCGCCCGCTGTTCATGT 22232 36 100.0 40 .................................... CATGTGAGGCGCGAGGAACTCCGCGAGTTCTTCTCGAGCT 22156 36 100.0 37 .................................... TCGACGGCCCCGTGTACTGGGTGGAGCCCGACGGGAT 22083 36 100.0 40 .................................... ACGTCGCGGTGCTGGCCTCGAGCAGCCCCGCGCGCAAGTC 22007 36 100.0 35 .................................... GCTGCGGTGCGTCTGCTCGCGGCGGCAGACCATGG 21936 36 100.0 37 .................................... TGGGACGGTTGGCCAGCCTCTGATCCTGCTGTCGGAG 21863 36 100.0 39 .................................... TCGCGTACCTACTGCAACGCGCCCACGCCGGGTGGTGCT 21788 36 100.0 37 .................................... GGCGACAAGCAACAGTATGATTCGCCCGCTGCGCAGG 21715 36 100.0 40 .................................... GAGCCCGACCGCTCGCGCGCCAGCTTCTCGAGCCGCTCGA 21639 36 100.0 39 .................................... TGCAAGATGATGTCGCCCGAGCAGTGGGCAAGCTACCAG 21564 36 100.0 37 .................................... ATCTACACGCACCCCGACCGGGGCAACGTCCCCGCTA 21491 36 100.0 39 .................................... TTGTAATAGCCCTTGGCTTTGAACGCTTCGTAAAGGTCA 21416 36 100.0 40 .................................... AAAGCAAAATAGTTTGGCTGCGAGCTTGCTTTCTGCTCTG 21340 36 100.0 43 .................................... AGCTGCCCGAGGATCAGCCCGAGGTGGCGAGGGTCCACGGCCT 21261 36 100.0 41 .................................... GACTGAGCCGATGCACCTCGCCATCGCAGCCGGCGTGTGTC 21184 36 100.0 37 .................................... TTGAGCCCGGGAGCTGGGGCGCCGCGCAGGCCGACGC 21111 36 100.0 36 .................................... GCGGCCCCACCATCGGCAGATCTTCCGCCACCGCTC 21039 36 100.0 36 .................................... TAGAGTGGTGCCGCTCGCGTGACCAGCATGGCCTCG 20967 36 100.0 40 .................................... ACCTCGCGCGATCGTATCGACTGGACCGCGGGATCGGGCA 20891 36 100.0 38 .................................... TTCGACGGTCGGACCGGCGTGATGCCGGTCTGGTTCTC 20817 36 100.0 41 .................................... GTGCTACACGCCTCGTGGTACTTGGCGATCGCGCCGTCCTC 20740 36 100.0 36 .................................... AGGTAGACGACGCCGTTCTCGACGTCGCGGATCCCG 20668 36 100.0 40 .................................... AGTTCGAGATGCTGGAGTCCCGGTGGGAACACTGGTGGCC 20592 36 100.0 37 .................................... GACGAAACGAACCGGTCCCCGGAGCGACCCGAGGCTC 20519 36 100.0 37 .................................... CGCACGGTCCACGGTACGCATCGTCACCACTAACTGG 20446 36 100.0 38 .................................... GGCCGTGGCAGACCGGGGGGACCACGCACAGCTTTTCC 20372 36 100.0 35 .................................... CGCGCTCACTGACGAAGCTCTCACGAAGCCCGGCA 20301 36 100.0 38 .................................... CCTGTGGTCCGTCTGGGCTTGGGTGATAGGGATTGCCG 20227 36 100.0 38 .................................... TTGCACGTGGACGTCGTGTACCGTGGCGAGCACTACCG 20153 36 100.0 34 .................................... CAGCCAGTCGCCGGTGGACAACGCCCTGGACCCG 20083 36 100.0 35 .................................... TGACCGGCGGCGCGCGGCTGTCAGACGCCGGGATC 20012 36 100.0 36 .................................... GCAGCACCTCGGGCACGGTCAGCGGAGCCGCGAGGC 19940 36 100.0 40 .................................... GAGGATGACGACGCTGGTGACGACGACAAGCCGGACCAGG 19864 36 100.0 40 .................................... GAGGATGACGACGCTGGTGACGACGACAAGCCGGACCAGG 19788 36 100.0 40 .................................... GAGGATGACGACGCTGGTGACGACGACAAGCCGGACCAGG 19712 36 100.0 40 .................................... GAGGATGACGACGCTGGTGACGACGACAAGCCGGACCAGG 19636 36 100.0 36 .................................... GCGGTAACGCCCGCGTACTTCGCCGGGTCAGGCCCC 19564 36 100.0 40 .................................... ACGGCACTCGGCGCGCCTGCCTACGACAGCTCTGCGAGGT 19488 36 100.0 38 .................................... TTCTGGCCACGGAACGATTTTCGATCGAGGCCACACCC 19414 36 100.0 39 .................................... ACGTAGCCGTCCCCCGGCTCACACAGACAGGGCTTCTCG 19339 36 100.0 36 .................................... CAGACGCTCGCCGGCACGCCCGGATCCCGACCGCGG 19267 36 100.0 36 .................................... GCCAAAGATCCAGGTGAGGAAGGCCCTGATCAGCGC 19195 36 100.0 36 .................................... TACACTGACGCGGACGGCGGCCACGCGGCCTGGTTT 19123 36 100.0 37 .................................... GACGTCGAGGGCGTCGAGTGTGGCCAGCGAGTTCATA 19050 36 100.0 35 .................................... ATCCCACCGCCACCGCGCGCGCCGTTCGTGCCGGG 18979 36 100.0 37 .................................... ATGTCGCGAATCCTCGAGAGCCGTCGCGTCGTTGCCT 18906 36 100.0 39 .................................... TTCGCCGTCTTCGATCCAGTACGCGACTTCAAGCAAGGC 18831 36 100.0 35 .................................... GACCACCTTGGATCCGTCGGCCACCGCGGTCGTAC 18760 36 100.0 38 .................................... TGCGCACGTGCCCCCATCACACACGAGCCCGGGATCGC 18686 36 100.0 34 .................................... GAATCTCGACGGGTCGGACCAAGACAGTGAGGCA 18616 36 100.0 40 .................................... CGTACATGAGCTCGATCCCGGACGGTTGCGGATCGTTGCC 18540 36 100.0 37 .................................... CAGACGATGTCGCGCATGCCCGTCGTGGCCTCTCCAT 18467 36 100.0 41 .................................... CGCACGAACAGGCCCGCAACATGACCGCTCAGCACCGCTAT 18390 36 100.0 39 .................................... ACGCCCGAGCAGGTGGACGCCGTGCCGGACCCGCTTGTC 18315 36 100.0 39 .................................... CGCTCAACCGCGGAGCGGGAGGCGCTGCGGCGCTCGTTT 18240 36 100.0 34 .................................... GAGCCATACGGCCTGGCCGGTCAGGCCCCGAGCG 18170 36 100.0 35 .................................... ACCCCACTGTCGGACCCACGCGAGCAGCGAGCACC 18099 36 100.0 39 .................................... GGGGCGGTGGAGTGGCCGCGGTCGAGGTTCCTCGGCGAT 18024 36 100.0 43 .................................... GATGGGCCCAGAGTTTGTACGGGCTCAGCCATGGGTGAGCCGT 17945 36 100.0 37 .................................... GAGGCCAGGAGCCGCGCGCAAGTACGGGCGCACGCTG 17872 36 100.0 38 .................................... GAACAACCAGTTCATCGATCGCGCTCGCTCGAGGATCT 17798 36 100.0 35 .................................... GACGGCGCCGACGAGGCCACGCAGGACGATTTTGG 17727 36 100.0 35 .................................... TCGCGGCGTGGCGGTCTCCCGCTGCGCAGCCTGGC 17656 36 100.0 36 .................................... GTGGGATCTCGTCGCCTCGCTTGTAGACGCGGCCGG 17584 36 100.0 35 .................................... GCCTCGATTACCCACAGCACTCGGCCGCTGACCGC 17513 36 100.0 39 .................................... GGCGAGTCGCTTCGCCGTTGCGCCCACAGGTGGCCGCCG 17438 36 100.0 35 .................................... CGGAGCCCGGCCGCTTGCTCGGCGGTCATGCACGC 17367 36 100.0 40 .................................... GACGATATCGACTTGCCGCCTCCCATGGTCGGGCTCATTC 17291 36 100.0 38 .................................... CGCGATCCCACCGAGCACCCCGAGCGGCGCGCACTCGA 17217 36 100.0 38 .................................... CCGTGAGCGCGAGGTCATAGTCGGACACGAGCCCGCCC 17143 36 100.0 34 .................................... GGAGTAGAGGCCGACATTGGGAAACTCCACGAGT 17073 36 100.0 34 .................................... GTCATCCCCATCGCTCGGAGGCTACCGCGAGTGG 17003 36 100.0 42 .................................... TGGGCGCTCGCGGTCGAGACCTTGGCTATCCCGCTGGACCAG 16925 36 100.0 41 .................................... AATGACGATGCCGCCGCCGCGCTCACTCGGCGCGAGCACGG 16848 36 100.0 39 .................................... CCATTGCAGTGCCTCGTGCTTGTCGTGGATCGTCACTAT 16773 36 100.0 40 .................................... ACGGCGGCTGCCGCGGCTGTGAGCTCGAGGGGATGACCGG 16697 36 100.0 40 .................................... ACGGCGGCTGCCGCGGCTGTGAGCTCGAGGGGATGACCGG 16621 36 100.0 33 .................................... ACCCCGCCAGCCTTGAGCCTGATCTTGGCCCCC 16552 36 91.7 37 ........................T.TT........ TTGCTCGGCGAGCCCCAAGACAGCGACCCGGCAACGG 16479 36 100.0 37 .................................... GCGCCACCTGACTCCAGTCTTGCTCCGCAGCCTCCAT 16406 36 100.0 36 .................................... GTTGGCTCGCTCGACTCCCTCTCGGGCGAAGATGAC 16334 36 100.0 34 .................................... AGCACTGCTTCTTCGCCTTCATGGCCTTCGCCAC 16264 36 97.2 0 ...............G.................... | ========== ====== ====== ====== ==================================== ============================================ ================== 119 36 99.9 38 CTTTCCGCCCTCGATTGAGGGCGGCCCCGTTGAAGC # Left flank : CCGTTGATTGTGTCGGCCGAATCGACGAATATGCCCTGGACGTGCTCGAGGTGGAAGAGGCGCTCGCAATAGACGAGTTCGTTGCACATGCGCACCGGGAGTAGGTCAGCGTCGGCGTGGGCGGCGGTGAATTGTGGGGATTGCATGAGTGGCGGGGCGGTTGGAGTTCAGGGGTTTGCTGGGGGGGATGTGGTTGGAGCTTGTGACGATGGGTGGCGGTTGGTTCATGATTGTTTGGGGATTTTCATCGACCTGGATTTGCGTTCAGATTGACCTGGGTTTGTGTTCAGGTTAGAAGGTTGAAGTCGCTGCACGCGGGGTCTGACGCAATGAAACCCCGGTCTTGCGTGCAAAGTGCGGAATTCGGGATGCAAGGGGGGCGGGGACGCTGTTTCAAAATTGGAAAGTTGAACAAGATGGCCTCCGCGAGGCGAGCGAAATCGCCCTGCGTGCAGGAGGTTGTCAAAAAGCCCGTGATTCTGGTAGGTTGCGAGCGAACT # Right flank : TCGCAGGTGAGAGCGAGCGAGCTATTTGATGTCGTCTCCAAGCCAATCGATGTTTCCGTTTCCCGTGCCCCCACGACTCCCAGGGAACTCACCGAAACCCCGCACGTGGAACCGTCAGCGCGCGCCCCGATACTCAAGCTCGGTCTCGACCACGGCCCCACCGTCGACGAACTCGGTGAGCGCGTCGCCAACCGAGGCCGAGCGCATGCGGCACTCGTCCTGAGCCCGTCGCTTGGACGGTCCCTCGGCGGCCTCGAGCACCTCGAGGATCCGCTGGGCAGGCCGAGGGGTCGTGGACCTCCGCCTCGGCGAACGCGAGCGCGGCCGCAGCTCCGGCTCGAAGGCACAGCCCGTGTGGCTCCTGGCGGCTCGTACCAGCCCAAAATCATTCAGCTTTGCCAATCTCAGCGCTGATTTGGAGCTAGTCTCGATCCGTGCCCCGCCCCCGCCGTCTGCTCCTCGCCCTCACGCTCACCTCGCTGGGCTGCACGCCCACCGTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCGCCCTCGATTGAGGGCGGCCCCGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.50,-14.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 111275-111423 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMCC02000008.1 Enhygromyxa salina strain DSM 15201 ES-Contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 111275 28 92.9 32 ..........T.............A... CCACCCCGGAAGTGGCCACCCCGTGACGCCTG 111335 28 100.0 33 ............................ GTCCAGGTTTCCAGTTCCAACGCTGTACAGCCT 111396 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 97.6 33 GGCTCCCCCGCACACGCGGGGATGGACC # Left flank : CCGGCTGGGGGCAGCGCGTCGATCCCCGGATCGTCGAGATCCAGCGCCCAGGCTTCGTCGCCAGGATCGAGGTCACCGAGCGGGAGCGCGATGAAGCCGTAGCCCTGCTGGTCGGCGTAGGTGATCGCCGCGAGATAGGCGGGCGTGTCTTCATCGAGGAGGTCGCGACCGAGCGCGATCGCGTTGGCCCGGCCGATCCGCGTGACCGAGAACCCGTCGACCTCCTCGAGCGCCGCCGCGGTCGCGACCGAGGCGTCGACGAGCATCAAACGCAGCGCGCTGTCAGACTCGCCGCGGCCGCGGTGGGGGCCAAAGCGATCTCGGGCTGCGAGCGCGAGCGCGACCACTAGCAGCAATCCGAATATCACGTAGTTGCGGGTTGCGGGTGTCAGTCGTTCGTCCACCGCTCCGGCCATCGTTGGCACTTGTACCACTGCGGTGGTTGCAGCTCAGGGCTGTGCGTACGACCGCGTGTGGGGGGATGCTTGCCAGCGCTCCAC # Right flank : CCCTCACGGCGTCGGCCGGTGGCGGCCGAGTCCCAGCGGCGAGCTCGCCGGGTCCATCCCCGCGTGTGCGGGGGAGCGAGAGCTGCAGAAGTTGCTTGCGCACGGGGGCAAAAGCAAGCTGCGGGCTTACGTTGAGGGCCTACGTTGAGGGCATGTTCACGAAAACCATGTTTGTCATCCTTCTCGCCGCCTGCGGCACCCACTCCAACGCGCCCGCGCCTGACGATCGCGAGCCGCCCGACCCGCCACAGATTGACCAACACTTCTGCTGCAACAGCGTCAACAGCACGGGGCACGGCAGCGGGCAAGGTTGCGTCGCCATCAACAAAGAGAACATCAACACCTGTGCTGAGATCTTGTACTGCGCTAGCAACTGGACGAAGAACAGCGACGGCGACGTGAAATGCCTAAACTAGTGCCCCGTCGGCTCCCCCGCACACGCGGGATGGACCCGATCGCGGCTCCCCCGCACACGCGGGGATGGACCGACCACCCCGAGA # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACACGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA //