Array 1 59-1148 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOTM01000269.1 Treponema pedis str. T M1 segment268, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 59 36 100.0 30 .................................... ATTTTTTGTTGAAGTTTATTTATTGTATTT 125 36 100.0 30 .................................... CTTTAATCCATTTATCTACCGTATTTATAG 191 36 100.0 30 .................................... CCTATCTTTTGATAGGCTTCAAGAGTGCCT 257 36 100.0 30 .................................... ATGTAAAGTCGTTTTTTAAAGTCCCGTATA 323 36 100.0 29 .................................... GGCGGGCAATATAGGGAGTGGCTTCATTG 388 36 100.0 30 .................................... TAAGGCTTCATACAGGTATTTTGGCAACAA 454 36 100.0 30 .................................... GCGCAAGCGTAAATGTCGAAAAGGCGTTTT 520 36 100.0 30 .................................... ATTACCGAAAAACACAGTGAAGGTAAAAAG 586 36 100.0 29 .................................... TTATAATCATTCCTTTAATGCGGCGCCTG 651 36 100.0 30 .................................... ACTCCGATTTTGAAAGGTTTCCAAATTTGA 717 36 100.0 30 .................................... CACACATGACGTCGTGCTTTACGACGTCTA 783 36 100.0 30 .................................... ACATCTTATTGAATATGTGGAGGACTTGGA 849 36 100.0 30 .................................... CTTATAACTAATATATCGTCTCCAACTCTA 915 36 100.0 30 .................................... AAATCTATATCAGATTTACGCTGTTTAGTC 981 36 100.0 30 .................................... CTTTGCACTGTCGGCACTGTCGCCGAATGC 1047 36 100.0 30 .................................... AGGCATTAAAGACAGATTAAGCGGTTATCC 1113 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : TTTGATTTCTTTTTAAAAAGTGATATAATGTTTGAATATTCCATAAAGCACTTTCTGGG # Right flank : TGTGAATGGTGTAAACCTATACCCAATATACATTTACTCGCTTTTTAACACAAAAAAACAGGCTTTTTGATGATGATTTTTTTCAAAAAGTCTGTTTTTTTAAAAAAATTCAAGTTGGGAGGGCGTTTTTTTCTTTTTTTCAGGGGTTTTTCCGATAAATGATTCTATTTCACCGAACTGTTTGTCGGTAAAACGGAGAATACTTACCTTTCCTTCACGCGGAATATGCTTTTTAATATACTTTACATGCACAGCGCAGGCCTCTGCACTTCCGCAGTGCCGGTAGTATACACTGAATTGCATCATAGAAAACCCGTCTTCTATGAGCTGCTGGCGGAATTTTGAAGCTCTATGACGTTGCTCTTTGGTATTTGTCGGTAAATCAAACAGGCAGATAATCCACATAATCTTATACGCATTAAATCTTGTATGCTCCATAGTTAGAATTCCGGCAACTGTAGTTTTTCCGTTTTCCCCGTAAGTATTTGAGCAAAGGAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 4740-8538 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOTM01000161.1 Treponema pedis str. T M1 segment160, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 4740 36 94.4 30 A...........................A....... AAATGAAGCACAATTCTTTATTGAATATCA 4806 36 100.0 30 .................................... TCGTGATGTTCGGGGTGATGAGAATTATTA 4872 36 100.0 30 .................................... TTATAGACAAGGACGATTACAAGTATATGG 4938 36 100.0 30 .................................... CACGGCGTTGCCAATTCCAGACAGTTTTTA 5004 36 100.0 30 .................................... TCTTCCAATTGGTGAAGATGAGCGAATAGA 5070 36 100.0 30 .................................... AAATCTATATCAGATTTACGCTGTCTTGTC 5136 36 100.0 30 .................................... GAAAGGTTTACCCTTTCAACTCACCCCGTA 5202 36 100.0 30 .................................... AATTTGCAGAACACGAAAGCCGGTTAAACA 5268 36 100.0 30 .................................... TTGGCGTCCGAAAGGGCAAGTTCTTCTTCC 5334 36 100.0 30 .................................... AAAAAGCAAAAATTGAAGCGGCTTACGACA 5400 36 100.0 30 .................................... TAAACTCCTGGAGGTATAGTCATCTCACGC 5466 36 100.0 30 .................................... CGCTCATAATCGCATAACGTGTTTCATCAT 5532 36 100.0 30 .................................... AAGCCGAAAAAATACTTGCCCCCACTTGTT 5598 36 100.0 30 .................................... AAAAGCTGTGTGCGGATACAGAATAGGTGA 5664 36 100.0 30 .................................... CAGAGCATCTGAAGCATGCGGGGTAGCATA 5730 36 100.0 30 .................................... CTCCGGAAGACAACCCCGACGCTGACGCTT 5796 36 100.0 30 .................................... ACACACAGACGGCGAGCTTGCCGCTTATGA 5862 36 100.0 30 .................................... GTATACCAATCTTCTTTGAGATATCATTGT 5928 36 97.2 30 ..........................A......... GTCGGTTCCGCAGATATAAAGCGTCTCAAA 5994 36 100.0 30 .................................... TCTGCAGCAAAATGCTAATTAAAGAGCCTA 6060 36 100.0 30 .................................... CGGCCAGCTTATTACGCCTGTTGCCATAAA 6126 36 100.0 30 .................................... GCCGAATATAATTTGATTTTTTGACACTCT 6192 36 100.0 30 .................................... AAAATTAGGCATCTTATTATTTTAACTCCT 6258 36 100.0 30 .................................... AAGAGCTGTCGATGCGTATTCAAGATGTTC 6324 36 100.0 30 .................................... GCTGGCGGCGGGCTATCTCCTTCTTGGACT 6390 36 100.0 30 .................................... TTTAAATATCAAAATGCTATCTGACTTACA 6456 36 100.0 29 .................................... TGAGGGCTATTTTTTTAACTATAATATAG 6521 36 100.0 30 .................................... AGCAGCGGAAGAAATTGCACGCAAGGCGGC 6587 36 100.0 30 .................................... TCTAATCGCCATAATACACCTCCTTAAAAA 6653 36 100.0 30 .................................... ACATTCCGCCGCTGTCCAACCCGCCGAAGT 6719 36 100.0 30 .................................... CTTGATTTTTATCGCATAAAACGATACACT 6785 36 100.0 30 .................................... TTTGAATGGCCGCGATTTTAGCCATTGCGT 6851 36 100.0 30 .................................... ACAAAAAAGAGCTCTCAAAAGTAAAAGCAA 6917 36 100.0 29 .................................... GAAGAGGAGTATAACAAGCGGCTTACGGA 6982 36 100.0 30 .................................... CAGATCTAGCTAAAACCGGCGATATTATCT 7048 36 100.0 30 .................................... GTCATACACTGCTTTATCCTGCTTTTTTAC 7114 36 100.0 29 .................................... TCTAAATTTTAAATAATCAATATCATAAC 7179 36 100.0 30 .................................... GGAATGATGCAAAATCATATCCGAAACCGG 7245 36 100.0 30 .................................... CCACGTTGCCGATAAGGCAGGGCCGTTGTA 7311 36 100.0 30 .................................... CCACGCTGCCTATACGGCAATGCCGTTGTA 7377 36 100.0 30 .................................... AAAATTCAGAAATGACACTGTTAGAGATTA 7443 36 100.0 30 .................................... TCGCGGAGCCATTGTCGATTGATTCCACCA 7509 36 100.0 30 .................................... ATGGTGACAATTAAATGACTTGTCTTAATC 7575 36 100.0 32 .................................... CCCAGCCCATTCGCTTCCGTCAGGTGCTTTTT 7643 36 100.0 31 .................................... AAACTTATATCATGCCTTCAAAAACACCGGC 7710 36 100.0 30 .................................... ATATAAACAAGGTTTACTTGCAAGTGCTCC 7776 36 100.0 30 .................................... TGCGTCCAAAATCGTATCTCTCATTCCTGA 7842 36 100.0 30 .................................... AGGAAAAGAAAAACTAAAAGAGAGTTTTTA 7908 36 100.0 30 .................................... GAGTTCCTCCTTAATATCAACATCGGTTTT 7974 36 100.0 31 .................................... CTTAGAACGTCAACGGCGTTGAATAAGCCGG 8041 36 100.0 30 .................................... TTGGGCTCCCAACGGGGGAGGGTGCCTGTT 8107 36 100.0 30 .................................... TGGATAAGTTTTATTTTTAATGTTTTTAAA 8173 36 100.0 30 .................................... TTCGATTCTTTTATGTTAGCTTTCATCGTA 8239 36 100.0 30 .................................... TTCGATTCTTTTATGTTAGCTTTCATCGTA 8305 36 100.0 30 .................................... AAAAAGGATTCGGATTTCGATAACAATCAA 8371 36 100.0 30 .................................... TAATAAGAACAAAAGAAACACATAAATTTA 8437 36 100.0 30 .................................... CTGTCCCCTTTTGTGTGAATTTTCCTGACA 8503 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 58 36 99.9 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : TATCTTTTATATCCAATCTTAATGTTGAAAATCTTTTATTCATATTGATACCATATTCACTATTTTAGTCTACTTTCAGATAAAAAGCAATATACGAGTACCTATACCTTTCGATTGGACTTTCATTAAACACATTAAAAATCCGGCATATTCCTGAAAACATTTCGGAAACTAAATAATGCACGGGAATTCCGATGCATTATTTACTCTAAGAGCAAACAAAACTTTTAATCCGCCTACATATCGAGCAGCAAAACCAAAATGCAATACTCATATTGCTAAATTTCGATTTGTTTATAGAAATGGATAAATTACGGCTATAATATCAGTAAGCGCTTTTTCATCAGTTAAAAAAATTATTTTGCGGAAATAAAATGTATTACTCTTTCGGATCAACAGGAAAAATTGCATCTACAGCCTGCTTTCTTTCATCTTATGCTCCTATCCCAGGAGACACAAACTTTCCAAGTTCACCTTGAAATTGGTTTAGTGTATATGTT # Right flank : TCGGATTATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 39-1589 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOTM01000331.1 Treponema pedis str. T M1 segment333, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 39 36 97.2 30 ...........................G........ CCTATCTTTTGATAGGCTTCAAGAGTGCAT 105 36 100.0 30 .................................... AAAAAGGATTCGGATTTCGATAACAATCAA 171 36 100.0 30 .................................... TAATAAGAACAAAAGAAACACATAAATTTA 237 36 100.0 30 .................................... CTGTCCCCTTTTGTGTGAATTTTCCTGACA 303 36 100.0 30 .................................... TCGGATTATATTACTAAATTTAGAGTACCT 369 36 100.0 29 .................................... TGACAGGAATTAATTCATCTGGAATATTA 434 36 100.0 31 .................................... TAGTAATATAATCAGAATGCAAAGCTTTCGC 501 36 100.0 30 .................................... GTCTTAGACCGCATTTCATCATATCGACCC 567 36 100.0 31 .................................... ATATAAGGAGTTTAATATATGGACCCGTTAA 634 36 100.0 30 .................................... GTACTTATAATACTTAAGAAGGTCATCACG 700 36 100.0 30 .................................... TCTTGATAGGGGAGATGTGCGAACGAGGGC 766 36 100.0 30 .................................... AACTGAATATGAAGGTGGCTCTGTTACTTC 832 36 100.0 30 .................................... CAGAAGGAGATAAAGCAGCACCAGAATAAG 898 36 100.0 30 .................................... GTATTTATAGTATTTGAGCAAGTCATCACG 964 36 100.0 30 .................................... GCAGGAGAAATTAAACTTGTTGGAAGTTAG 1030 36 100.0 30 .................................... GTTTATCCCCTCAACTCGCCCCGCAGGGCT 1096 36 100.0 30 .................................... ACGCCTTACGAATATCTAAAGCATCAGCTT 1162 36 100.0 30 .................................... AGATTTGCAAAACAAACTGCGTTTGAATTA 1228 36 100.0 30 .................................... GTCTTAGACCGCATTTCATCATATCGACCC 1294 36 100.0 30 .................................... AAAATAGAAAGAAAAATTAACCTTGTCGAG 1360 36 100.0 29 .................................... GTTTGAATATTCCATAAAGCACTTTCTGG 1425 36 100.0 30 .................................... ATTTTTTGTTGAAGTTTATTTATTGTATTT 1491 36 100.0 28 .................................... CTTTAATCATTTATCTACCGTATTTATA 1555 35 97.2 0 ............................-....... | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 99.8 30 GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Left flank : GATATAATCTTTAATCCATTTATCTACCGTATTTATAGG # Right flank : CC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGATTTCTTTTTAAAAAGTGATATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //