Array 1 857-400 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUBN01000259.1 Streptomyces antimycoticus strain NRRL B-24289 NRRL_B_24289_contig_259, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 856 29 100.0 32 ............................. TCATGGGCCGGGTCGTGGATGAACTCGGCGAC 795 29 96.6 33 ............................A GTACAGCAGCTCGCCGGCCGACGCGTGGCCGGA 733 29 100.0 32 ............................. CGGAGAAGGCGGCCGCCGAGCTGCGTGAGGAC 672 29 100.0 32 ............................. CCCGTGGCCCAGGAGCATGCCCTCCTGCTGAT 611 29 100.0 32 ............................. TCGGCCAACCAGTTGCGGGCGTTGCCCTCGGC 550 29 100.0 32 ............................. CGAGCCGGAGCGTGACCAAGGTCGGCCAGGCG 489 29 86.2 32 ..C..........AG..........A... TCGAGGGGGCGGGCCACTGGACCTTGTAGTGG 428 29 86.2 0 .............AT..........G.T. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 96.1 32 GTGCTCTCCGCGTGAGCGGAGGTGACCCG # Left flank : GTGGAGATCTTCGGAAAGTACTTCAAACAAGAACTGGGCTTCGACTCGGTGCCTTTCGTCGCGCAGCACAGCCGTCTGTACGCCGGCGATCCCACAGTCGAGGTCGTCCTCTTCGACGCACAGAGAGTCCAGGCGACGTTCCCGATCGCCGCTGGCGCTGCCGGGCTGAGCGTCCAGGATGGAGAGCGCTGGCTGGACTGGGTCTGGATCCACCCCTTCGAACGAGGAAGGGGCCTCGCCGATCAGGCATGGGCAGACCTGGAGGAGATCTACGGCAAGGCGTTCAAGATCCAGCCACCGCTCTCGCCCGCCATGGAGAGATTCCTTACCCACCACGACATCGCTCCCGAACGCTGGCGCTTCTGACGTCCCCGGGCATCTGCACCAACCCGCTGACCTCCGCCTTGACGGAGGCGAGCGATACGTTGTGGTCCGTGCACGACAGCCGTTCCTTGATTCAAGAAAACGCAAAGCCCCTCTAACACTGCAGGTCGCGAAGG # Right flank : GGCGGTCTGGACGAATCAGGCGCACCAGCTGAGCCTCGGTGGTCATACGGTCATCGTCCCGGCTGCCGTCGAGGGGCTGGGCGGCGAGCTCGGGCAGCCGGGCCGTCCACGGCGCGGGCGCGGCTGTCTCCGTACGGGCCACGGTCCGCTGGCGCAGCTGCAACGGGCGGAGGCGGGCATTCGAAGGCTGATCAAGGAGGGCGAAGAGATCAACTTCCGGGCCGTCGCTCGTGCGGCGGAGGTCAGCCTGGACTTCCTCTATGCCCACACCGACCTGCGCAAACGCATCGAAACCCTGCGCGGCCAGCAACGGACCGCAGACCGGCCTGCCCCTCAGGCGCCCTCAGTCGACGACGGCACGGTTATCCATACCCTTACCTCGTCGTGAGCGCACCACCCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGTGAGCGGAGGTGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1938-1666 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUBN01000259.1 Streptomyces antimycoticus strain NRRL B-24289 NRRL_B_24289_contig_259, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1937 28 100.0 33 ............................ GTCAGCCGACGACGAGGCGCTGATCGAGTACCT 1876 28 100.0 33 ............................ GGCTTCGATCGCGTTCCCCCGCAGGACCTGGAG 1815 28 100.0 33 ............................ GAACTGGGCATCCCCGAACCGGGCCTGCTTATC 1754 28 100.0 33 ............................ GGCGGCGATCACGAGGAGGAGCAGGATGAGCAC 1693 28 89.3 0 ..G..........GA............. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.9 33 GTCCTCTCCGCGCAGGCGGAGGTGAGCC # Left flank : CGACAGCGTCCATCAGCTGCTGCAGGCCGTCAGGGTCGTCCTTGAGGAACCGGGCGGCCGCGTTCACCGCGCCCTCGTCCCAGATGATCGCGTAGGTCAAGAAGCGTGCCCCAGCCCGAGCTGGGCACGCACCTGCTCGTGCGGCACACCGGTGGTCTCGCCGGACGCCTGCCGCGCCCGGTACTGCGCCAGGGCCAGGGCGTCCTCGAGGTCGGCCAGTTCCTGCGGGTTGATCAGGACCGCCGCCGGCTGGCCATGGTCGGTGATGGTGATGCGCTCACGGGCATGGGACGCACGACGCACCAGCGACCCGAACCGGGCCCGCGCTTCCGTAATCGGCAACGTGTCACTCATGAACAGAAGTGTACACTTCGCGCGCCTCACGCCGTCACCATCCCGGAGCACGAACATGGGTGAGCGGTAGATTGAGGCGCGTGTAGGGACCATCGCTCCTTGAGTCAAGAAAATGCAAAGCCCCTCTAACGTCGCAGGTCGCGAAG # Right flank : GGTTTTACGGCCTTAGAACCAAACGCGGCCCCCTCCCTCACTGGGCGAGCGGAAGAGGAGGCGCTGGTTGACGGGGTATCGGTTCTTCCTGCCTCTTAGCAGGATGGCGCCATGTCCATCAACGACCTGTCTCCAGAAGATCGCAAGGCACTCCTTGCCGAGCGCCGGGAAGAGTACAAGAACTTCTGGCCTGGTCCCCACGGGCGCCGAGCTCGCTTCGCCATTGAGATGTTTCCGCTGCTGCACGCCGACAAGCGACGCGGCCACGCCTTGATTCCCGCCACTCAGGACATGCGCCTGCGTAAGGTCGTGGAGATCTTCGGAAAGTACTTCAAACAAGAACTGGGCTTCGACTCGGTGCCTTTCGTCGCGCAGCACAGCCGTCTGTACGCCGGCGATCCCACAGTCGAGGTCGTCCTCTTCGACGCACAGAGAGTCCAGGCGACGTTCCCGATCGCCGCTGGCGCTGCCGGGCTGAGCGTCCAGGATGGAGAGCGCTG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCAGGCGGAGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCTCCGCGCAGGCGGAGGTGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2818-2606 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUBN01000259.1 Streptomyces antimycoticus strain NRRL B-24289 NRRL_B_24289_contig_259, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2817 29 100.0 32 ............................. CTGTCACCTCCTCTCCCCGAGCGCTGGAGGGC 2756 29 100.0 32 ............................. GAGCACGAGCGGGCGGGGGAGATGGACCTGAT 2695 29 93.1 32 .............G..............A GAGGCGAGCGTCCTTCTGCGGCCTACGCCGCG 2634 29 86.2 0 ..G........G.G............T.. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GTCCTCTCCGCTCAAGCGGAGGTGAGCCG # Left flank : CAACGACTCCGCCCGGACACGCTGCGCTGCCCGCGCCGCGCGGGACACCGTCCACTGTCCGGCCTTGTCCCGGCTCCGCTCCCGTTTACCCCGGCTCGCCTTCCCCACCCCTTGCTCTCCCTCCCGCGACGGCCGATGCCCAAGCCGTACCCAACCCCCACCACACGACACGACGGGATCCGGCCGATAGAGGCAGGTGAGCCACCGTCGCGCAGCATCACCTTGTGCGTGATCTGATGCTCGCCACACAGACGGAGGATGGAGATGAACCGTCCCAGTGTGCTGGGAGCTGGGGCTGCGTAGCCCGAGTCCGGCTGAGGCGCGGTCGGCGGCCGTGGGCGTGTCTTGGGCCTGGTCACCATCAAGCCGACCGTCATCGTGGTGGTGGCCAGCAGCCCGGCCTTACTGACGAGGCAAGCGATACGTTATGGCGTGCGCGCGACCGTTGCTCCTTAATCCAAGAAAACGCAAAGTCCCGATAACGCCGCAGGTCGCGAAGG # Right flank : CATGCTGCGGACCTATTCAGCCGGTTCGGCCGATGTGGATGACCACGATGGTGACGGTGGTTTCTGTGATCTCGTACAGGACCCGGTAGCGGCCGACGTGCATGCGGCGCAGGTTCGGGGAGCCGTACTCCGCGGTGCCCGCCGGTCGGGGGGTGTCGGCGAGCAGGTCGACAGCGTCCATCAGCTGCTGCAGGCCGTCAGGGTCGTCCTTGAGGAACCGGGCGGCCGCGTTCACCGCGCCCTCGTCCCAGATGATCGCGTAGGTCAAGAAGCGTGCCCCAGCCCGAGCTGGGCACGCACCTGCTCGTGCGGCACACCGGTGGTCTCGCCGGACGCCTGCCGCGCCCGGTACTGCGCCAGGGCCAGGGCGTCCTCGAGGTCGGCCAGTTCCTGCGGGTTGATCAGGACCGCCGCCGGCTGGCCATGGTCGGTGATGGTGATGCGCTCACGGGCATGGGACGCACGACGCACCAGCGACCCGAACCGGGCCCGCGCTTCCG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCTCAAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 5775-4526 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUBN01000259.1 Streptomyces antimycoticus strain NRRL B-24289 NRRL_B_24289_contig_259, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5774 29 100.0 32 ............................. GTACGAGTACCCGCTGTCCCCGACGCGGGCGC 5713 29 100.0 32 ............................. CACTGCCAGTCCTCGGAGTACTGGAGGGAGGC 5652 29 100.0 32 ............................. CCGCATGCGTGGAGGTGGCGTTGTGCCCTCAC 5591 29 100.0 32 ............................. CTGGCCGGGGCCAAGACCTGGACCGGCGTCTG 5530 29 100.0 32 ............................. GCGACCGATGGGCCGCTGTCGCTGAGTGCGCC 5469 29 100.0 32 ............................. TTCAGGGTGCCGACGCCGCGCAGGTGGGAGCC 5408 29 100.0 32 ............................. CTGTGCGAGAACCTGGGGTCGACGGTGGGGCT 5347 29 100.0 32 ............................. GAGAACGCCCTGTTCTTGACGTGCTCGGTGTG 5286 29 100.0 32 ............................. GCACGGGTCGCGCTGAGTCCGAAGACCCGCTC 5225 29 100.0 32 ............................. CAGCCCGGCCGGGTTGGCATGGGAGGGGACAC 5164 29 100.0 32 ............................. ACGGCGCCTTGCTCTCGGATGCTGTTCATGGC 5103 29 100.0 32 ............................. TTGTTCGCCGCGCAAGCGGCGGCGCGTGCGGT 5042 29 96.6 32 ............................T CGGGAGGCTGCTCGGGCCGCGTTCGAGACTGC 4981 29 100.0 32 ............................. GCAGCGAGGAACATGACCGGGCTGGTCGACTG 4920 29 100.0 32 ............................. AGCTGCTCAGACCCCATATGCGTACTCCCCAT 4859 29 100.0 32 ............................. CCCGGCAGACGAGCAGCTCGCCCTGCGGGTCT 4798 29 100.0 32 ............................. GGGTAGCAGTCGGCCTGGTCCTCGCCATAGCC 4737 29 100.0 32 ............................. CGCCGACGGAGAGCTTTTGCGCAGTCACGTCA 4676 29 96.6 32 ..........T.................. ACGGGGGCGCCCGCGCCGACTCGGCGGACGAC 4615 29 96.6 32 ............T................ TCCTCCGCGGCCATGGTGCTGAGCCGCAACGG 4554 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GCCCAGTGCGTCGCCCGCTCATGCCTCAGCCCCCGCTCCCCCTCCGCACCCGGCGCCGACGCATACGCCTCGTCTGCGGCGAGGACGGCGTACCTGCTGGCCGACATGCTCTGAAACGGCGGAGTGATCTTCCCCAGGTCATGCAACCCCGCCCAACAACACACCAGCCGCCGCGCCGCTTCCTCATCCAGCCTCAGCCGCTCAGCGATCAGCCCACGTGAGCGATCTCCCAGCATCACGTCCCACAGCCGACCGGCGATGGCCGCCGTATCCAGCAGGTGACAGATCAACGGGTAGGGCCTCAGCAGCCCCTTTTCCTTCCCCCACAACCGCGCGTCGAGGCCAGTCCCGGCAGGTGCTAACGGCGTTTCGTCCATGCCGTACGACTACCAGCAGCCACTGACAATCGCCGACCACACGATAGGTTGGCACGCATGTACAACAACTGCTCTTTGAGTCAAGAACACGCAAAGCCCCTCTAGCATCGCAGGTCGCGAAGG # Right flank : ACGCCGTGGCGGGCGACATCGATCGGTGTGGACCGGATAAGCGATCGGTGCTTTGGCGATGGGATTTACGAGTCGACGAGGTAGGCCTTCTCGCCCATCATCAGCGGAGCATCGACCGGCCCCTTGATGTAGGGGCCGCGCCAGATAACCCGGTGCTCCTGGCGGCTGGGATACCACTGCCTCACCTTGTGCATCCGTACCGGCCACCGATGGTGGTACGCCCGCCTCTTCTCTCCCGACGTCTCCGAGGCCCGCGGCGAGGGCGCGGCCAGCCGAACGACGCGCACCTCGGGGTCGTACGGGACGGAGTCGGGGCGGCCTGGGACGTACTGCGTCCTCGCCTGGTTTCTGGGATGGTCGGCGGTTGTGATGCCCTGCGCAATCAGCCGCCAGAAGGCGAACATATAGCGGCCCGCGAAGTCGTCGTAGGTGTCCTCGACACGGCCTCCGCCCCACTCGCCTATCTCGTCAACCGGCTGGGCACGCCACTCCGCGGCCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26717-25291 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUBN01000164.1 Streptomyces antimycoticus strain NRRL B-24289 NRRL_B_24289_contig_164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 26716 37 100.0 35 ..................................... GGAGCATCCGTCAACGCCGCGACCTGGATGCCCTG 26644 37 94.6 38 ...............C.....A............... GGGTCTGCGGGCGGTCGAGCCGTTCTCGTGCGGTTGAG 26569 37 86.5 35 ..............GC...AC..T............. TTCGGCCCGATGGCCCGTGCCAGCACGCCCCTGAT 26497 37 86.5 36 ........T.....G....AC..T............. CTGGAGGTGGGCGAGTTACGCCGCCACTACGTCCGG 26424 37 89.2 37 ........T.....GC...A................. CTCGTCATGGACGGCGACACCGCCAGGGGCTTCTACG 26350 37 78.4 38 ..........TT..TC...AC.G........T..... TCGAACGCGGTGACGATCTCCTGGCGGGCGAGCAGGAG 26275 37 81.1 35 .C..T.........TC...AC....A........... CTGACCCGCGGGCAGGTGTCCCCGGCCCCGCCGAG 26203 37 100.0 37 ..................................... TTCTCCAGCCCCTTGACCACGCCCTCTGCGGCTTTGA 26129 36 81.1 35 A.......TA....-.C.......T.G.......... GTCGCGAAGTCGGTTGACCTGGACACCAGGCTCAC 26058 37 89.2 36 ..............GC...AC................ GGGGTGTGAAAGACGGTCAGCAGCGGGAGGGGGGTG 25985 37 86.5 36 ...............C..AAC...............T GCATGTCTGGAGACCCAATGGTCAACATGGCGTGGG 25912 37 97.3 37 ...............C..................... GACCAAGAGGCTGAGCCAGGCCAGCTGCGGGTACAGC 25838 37 86.5 37 ..........T....C...AC..T............. TCCGTCCTCACCGTCACCCCGCTCGTCCAGCGCGTGA 25764 37 86.5 35 ...............C.A.AC........G....... ACCACCGCGGTCGCCGAGTACGACCGCTCCGCCCG 25692 37 89.2 37 ...A...........C...AC................ CTCTACCTCGGGGTCACCCTGCTGGGTCAGTCCGCCC 25618 37 91.9 36 ...............C....C....C........... GTCGACGCGCCCGAGGAGATCCTGATCGGCGCACTC 25545 37 91.9 33 ...............C...AG................ CTCTACCTCGACGTGGAGGAGACTGTCGCGGCG 25475 37 91.9 36 ....T..C.......C..................... GAGGGGTCGCGGCAGTACGTGCTGCACACCCGCACG G [25467] 25401 37 86.5 37 ...............C..TAC..........T..... CAGTCCAGGACGACGGTTTCCCCGTCGATCCGAGCGA 25327 37 91.9 0 ...............C...AC................ | ========== ====== ====== ====== ===================================== ====================================== ================== 20 37 89.3 36 GTGGCGGTCGCCCTCTGGGGTGACCGAGGATCGCAAC # Left flank : ACGACCGGGGGACACAACCTCGTCGCGAGCGACCCGTCGTGGAGCAAGTTGCCCAGTGGCGGTCGCCCCTCCGGGCGACCGAATCATGTACTCTGCATTGGTGCCTGTTCCGCTCGCCGCCGAGGTCGACGAACTGGTCCATGGCCACGGTGCCCGCGATGGTCCGCCACTTCCCCGCGACCAGCACCGGGCCGATGTCCGAGGCGTGGAGATTCGGGTGCCTGAGGTGTGGCCACTACACTCCAGCGTCGACTCTTAGAACACGTCGATGTGACGATAAGTCTTCGCCAGGGTGCGGTCGTAGACCTTGTGCCAAGGAGGCGGATCTCGCTGCGCAGGCTGTGGCTACGCTGTCGTTGTCCACGCTGAAGGCAGTGCTTCGGAACCTCTAGTGCACGCACGACACGCGGATCGCTCCGAAGGAAAATGACCGCATCTATACCTCTTCCTCCTTCGCTTCAATCGGATTATGGATAGGCTGTCTTAGCTGGTCAACCAGC # Right flank : GCCATGGCCCTCATGGCCCTGTCCCTGCCGAATACTTCATCCGTGCAGGTCATGCTGCATGTTGGTATTCGTGGAGGATGCCGCCGAGGTGGTCGTGGCGGCGTATGTCCAGGCGGCTCTACTTGTCCGGATCGTTGATCGGTGTGGGCAGTGGGTGCAGCGGTCGGGCGTCGGGGATGCCCTGGTGGGGTCGGTGGGCGTTGTCGAACTGCCCGTACTTGTGCAGGGCGTGCAGGAGGTGGCGCTGGTTCCAGATCAAGGTCCGGTCCAGGAGCTCACGTCTGCAGGTCTGTACCCACCGTTCGATGAGCGAGTTCATTCTCGGCATCTGGATGCCGCTGAGAACGACTGTGATCCCCGCGTCCGCGAGGACGCCATCGAACAGGGCGGGGAACTTCCCGTCCCTGTCTCGGATCATGAATCGTGCCCGGAAGTCGACGTCTTCGAGGTCCATGACCAGGTTCTTCGCCGCTTGTGTTACCCAGGAGGTGGTCGGGTGT # Questionable array : NO Score: 4.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.16, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCTGGGGTGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.40,-15.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [27-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 28698-28443 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUBN01000164.1 Streptomyces antimycoticus strain NRRL B-24289 NRRL_B_24289_contig_164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 28697 36 81.1 35 .C..T.A...T......C.C-................ TTCCCCGGCACGCTGGACCTGGAGACCCATACGTG 28626 37 94.6 37 C......................G............. GGCCTGGTCACCATTCCGATCAAGGTCCTGCCCGCAA 28552 37 100.0 36 ..................................... ATCATCTCCCGAGCCGGGCTGTCGACCGGCACTTGT 28479 37 97.3 0 ........................G............ | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 93.2 36 GTGGCGGTCGCCCTCCGGGGTGACCGAGGATCGCAAC # Left flank : CAGGACAACACTCCAAGGACCCCAATGGAGCCACCGGAGAAGTCATCGAAGCGCTGCGAGCAAAGCTGCACTACCCGGAGGTCGCGCACAGAATGCGAATCATCGACAACGAACACTCCGTGGCCGTGGTCGTCATCCGCCCCCAGCTCGAAGAAGAAACCCGACGGGCCGCCCAGAAGGCAGTCGACCAACTCCGTCGCGGCCTGCCGACGCCAACGACCTACCGCACCCTGCAGGAACACATGGCGTCCATCCCCGAGCGGGAACTGGGGCTGGCGATCAACGCCGGCCACGCCATCGAAGTCACCGGTGACCTGCACCAGTGGGTCGGCCCTTACCACCCCCAACGAGGCATCGAACCCCCTGCATGACCATTCAGACCACCGAGCAACGCCTCACCGGTACGCTTGAGGAACTGGGACCGTCAGCCAGCAGCCGAAGTGGCGGGGGATCATCTTGCAGCAGTGAAAAGTTCGAGTATTTGGAAGATCGAACGCGTC # Right flank : ACGTCCACCAGAGCGCGTGTCAGCCGGAAGCGGCAACGCGTGAATTTCTCTGCTATGTAGGCGCGTTGCGACCCTCGTTCGCCCTGCAGGGCGAACGCCACCGCTCTAGGTCCGCGCGCATGCCGTCCGCAGCGTCGTTGCGATCCCCGGCCGCCCCGAAGGGTGGCCGCTACGCTGGTTGGCCAGCCCAGACAGCCTATCTGTGCTTTCAAACGAAGTGGAGCGAGAGGAGACATAGGTTCATGAGTCGAACATTTTCATTCGGAGCGACCCACGCTTCGCACGTGTACTGGAGGTTCCGAAGCACTGCCTTCGGCGTCGACAGTGACCGCGTAACCACCGTCGGTGCGGTGAGTCGTCCTGCGCTGCTGTCAGCCCGTCTTGTCGGCAGTGCTGTGTAGGTTCCCATCCAGGTTGGTTTGACTGCAGATCAGTGGATCCCGGGGGAGTTTATTCGTGGCTTTTGTGCCCCTATTCGCGCATAGTCTGTCTCGTTGCGG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGTGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 1 3835-1853 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUBN01000263.1 Streptomyces antimycoticus strain NRRL B-24289 NRRL_B_24289_contig_263, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3834 29 100.0 32 ............................. TTCAAGCGGCTGCGCGAGGACCTCGAGCGCTG 3773 29 100.0 32 ............................. CTCGGGGGCGGGTAGTTGCCGTATGCGGCCGG 3712 29 100.0 32 ............................. GAGTTGCTCGTGAGTGAGGGCAGCGGGATCGA 3651 29 100.0 32 ............................. CCACGACGATTCACGTCAACATTGTGTAGTGC 3590 29 100.0 32 ............................. CGATCTGAAAGGGGGGTGGGGTGCATGCGCTG 3529 29 100.0 32 ............................. CGGCATGGGGGTGCGGGCTTCCCGGCCTGCCC 3468 29 100.0 32 ............................. TGCCGGAGCGTGGACGTTCCCAGGTGCAGCCC 3407 29 100.0 32 ............................. TGGTTTCCCAAGCTGATGACCCAGGTCGCCGA 3346 29 100.0 32 ............................. TAGACCCGGTCCGCTGTCGGCGGGCTGCGGCA 3285 29 100.0 32 ............................. GCGTTGTACGACATGGGCGGGTTGGTGCTGGC 3224 29 96.6 32 ............................A CTCACCTCATCAATTTCGGGTCGCCAGTTGGC 3163 29 100.0 32 ............................. GTCGCAAACGAGATCATCGCGATGCGTAAAAC 3102 29 100.0 32 ............................. GACCCGCAGGCCAGCCACGTCAAGCCGCTGCT 3041 29 100.0 32 ............................. GCCGGATCGGTCAGCATCCGCTGGTAGGCGCC 2980 29 100.0 32 ............................. ATCAACACGGTCACACCTCATGCATTACGTGC 2919 29 100.0 32 ............................. GCCATGCAGGGCAGCCTGTTCGACCTGCTGGC 2858 29 100.0 32 ............................. GGCGAGGCGCAGCTCGGCCTTGGTGTGGGTGA 2797 29 100.0 32 ............................. CGCTACGGGCCCCGGAACCGAGTCACCTCCGA 2736 29 100.0 32 ............................. ATCACACCGGCGTCGAGCGCGAGCCCTGTCAC 2675 29 96.6 32 ..............A.............. GTTGTAGCCGAGGGCTACGGCTGGACCGAGCA 2614 29 100.0 32 ............................. CTCCAGGGCACCACCCAGGGCCAGGCAGCCCA 2553 29 100.0 32 ............................. GGTTTCAGCTCGTTTCCACCCCACCGCGGTCC 2492 29 96.6 32 ............................A GAACCGGTCGGCATAGCGGCTCAGGTAGTCCT 2431 29 100.0 32 ............................. GCATGGGCGCGGTTGGGGGACCGGCAGCAGAC 2370 29 100.0 33 ............................. GATCACGGCAGCGACCAGAGCGGACTTGCCATC 2308 29 96.6 32 .................C........... TTTGAACGCAGCCATGCGTAAGGGCCCGTAGC 2247 29 100.0 32 ............................. CACCGCCCGAGGCAGCTCCCCCTGCTCCTCCG 2186 29 100.0 32 ............................. CCCAGGAGGCCTGATGCGTGTCCTCCTCAGCG 2125 29 100.0 32 ............................. TGCCAGTAGGTGATCTGCTCCGTCCAGATCTC 2064 29 100.0 32 ............................. CGCCCGCAACGCCCCCCACAACGACGAGTACT 2003 29 100.0 32 ............................. AGAAGAAGGACAGCGGGAGCGACGAAGAAGAG 1942 29 100.0 32 ............................. GGCCGGGGGGGTCTGTTGCGTCGGGTTGCCCT 1881 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.5 32 GTGCTCTCCGCGCAGGCGGAGGTGAGCCG # Left flank : CGACATCCAACGGATCCTCGACCCCCAGCACAGCGCTGATACACCGGAACCAGAAGAACAACTCGTCGACCTATGGGACCCCGTCTCCGGCCCGATTCCTGGCGGCACCAACTACGCAGCAGAGGCACCATGACCACACGAGAGCCCCCATGCCATCCATGATCACAATCGCGGCCTCGGCAGTCCCCGATCACCTACGCGGGGCGCTAACCCGGTGGCTGCTGGAGGTCACACCCCAGCTCTATGTCGGTACGGTCTCAGCCCGCGTACGCGATGAACTATGGAGCACGGTCACAGCCTGCACCGCAGACGGTGTCGCCGTACTCGTCTACCCCACCAACAACGAGCAGGGCTTCGAGTTACGCACTGCAGGCCGACAACGACGGCGACCGATCGACTTCGAGGGACTGACTCTCGTCGCTCTCGGATCCCTCCAACCCGATCCACTGAGCGACAGTCAAGAAATGGCAAACCGCTTCTAACGGTGCAGGTCGCGAAGG # Right flank : CGATCTGGATCGCGCCGCACGTAAAGGGTCCGGAAGGCGCTCCAATGATCGGTGGCGAAAAGGTCAACATTTGGAAGCATTGACGGGCTGATGCGGCACTACAGAGCGGGGCTGGCCGCCAAGCCGGTCGCGACGCCAAAGGAGGCAGCCGGGCTGTGCAGGCTCACCTCCGCTCGCGCGGAGAGCACGTCTCCAGGCCCACCTGCGTCGCGAGGGTCTGCGGCTCACCTCCACTCGCGCGTAGAGGATCGCGCCTCAGTCGAGGAACCGCCTGTCGTCGCTTATCTGGACGGGTTTGGGTTCTGCGGCGGTGGCTTCCCTCGATCAGGTGTACCCCTGCCGAGTGCGTGTCATCGTCTCCTCGCCGTGCAGTGTCTGGCGCTCTCATCAGCCAGATCGCAGAGCTGGCCGATGAACTCGCGGTAGCTGTCGGGGCGTCGTAGTCCTTGCCGGGTGGTCCGTTGATCCACTGCTGCCAGAGGCCGTCTGGAGTGAGGAAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCAGGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGGAGGCGGAGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //