Array 1 135-1483 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBNI010000014.1 Pseudomonas aeruginosa strain PAEM NODE_14_length_114880_cov_53.978506, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 135 28 100.0 32 ............................ GTGAGGTAGTCGTAGAACATCCTGCTCTGATG 195 28 100.0 32 ............................ AATCACCAGAACGAACCACACAATAGAACACC 255 28 100.0 32 ............................ TTGTACGCCTTGTCATGCAGGAACGGCCACAG 315 28 100.0 32 ............................ TCAAGGGGTGGCGTGAGCTGCCCGAAGGCGCG 375 28 100.0 32 ............................ AGGATCAAGGCGCTTGCCCAGGGACTGATGGA 435 28 100.0 32 ............................ AGCATATCGCGTTGCCCCGCGATCTCAGCCAG 495 28 100.0 32 ............................ ACGAAGCGGACCGGGCGAACAACGTCGTACCG 555 28 100.0 32 ............................ AGTCCCTGGGCAAGCGCCTGATGCCCGGCGTA 615 28 100.0 32 ............................ AAGGCCAAGGTCGATCCCTCCACTGGGGTGAC 675 28 100.0 32 ............................ AGGAGCTGCAACTTCTTCCGCCGCCGCTTGCT 735 28 100.0 32 ............................ TGATCCGGGCGATGGTGGAGACGGTGGTGATG 795 28 100.0 32 ............................ TGGAGGGGTGACACTCGCCTGCAGGACCAGCG 855 28 100.0 32 ............................ TGGAGGCGGGGGATGTTCAGCTGCGACAGAAT 915 28 100.0 32 ............................ GTCTGCCGTCGTTCACGGCTTGCACTGATTGG 975 28 100.0 33 ............................ CTGAAGACACGCCGTTATGAAAGCATACTTACA 1036 28 100.0 32 ............................ AGAATCTACGGACGAATACCGCGAAGGCATCG 1096 28 100.0 32 ............................ ATCATGATACGTCCATCGAGTTCGTCAGCCTC 1156 28 100.0 32 ............................ TGCGAGCAGCTTGCCGCTTGCGGCCAACGCCT 1216 28 100.0 32 ............................ TGGCCGCTCGGCGTCGTCTCGTTCGCCACCTG 1276 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 1336 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 1396 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 1456 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11236-10007 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBNI010000014.1 Pseudomonas aeruginosa strain PAEM NODE_14_length_114880_cov_53.978506, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11235 28 100.0 32 ............................ AGGACGTGGATAAGGCGCAACACCATCAGCCG 11175 28 100.0 32 ............................ TTATCGGTCGGCAGCTTGCGCAGGTCGCAGGA 11115 28 100.0 32 ............................ TCCACGAGATCAAGGACGACAAGGGCAACCGT 11055 28 100.0 32 ............................ TGAAGGACCGGGAAATCAAGCTCCGCGTCGAT 10995 28 100.0 33 ............................ ACGTTGCCCCCATCCTGACCATCAACGGAGCAA 10934 28 100.0 32 ............................ GGTGACGCTGCACATCGTCGCCGCCGACTTCA 10874 28 100.0 32 ............................ AATCAGATCCCTCGCCGAGCGGCGCATCATTG 10814 28 100.0 32 ............................ AAACTCATCAGGCACCGGCAGCGCAATCAACT 10754 28 100.0 32 ............................ TGGCCGCTCGACCACGCCGGCATACTCACCGC 10694 28 100.0 32 ............................ TCAACAAACGCCACGGCGAACATGAACACGCT 10634 28 100.0 32 ............................ AGCCACTGGCATTCGAATGGGCCGGCCGGGAA 10574 28 100.0 32 ............................ TGGCGAAGGGCAGGGATGACAAGGGACAGCGT 10514 28 100.0 32 ............................ TTGTAGGGCGGCTGGGTATCGCTAACCATCAG 10454 28 100.0 32 ............................ ACCGCAATCCGTCAGTTCCAGTTCCGGGACAT 10394 28 100.0 32 ............................ ACCTCAAGCGGAAAGCAGATCGGCCGGACGTT 10334 28 100.0 32 ............................ TCGACGAAGCCGAGACGTTCACCAGCGCCCAT 10274 28 100.0 32 ............................ TACCACCAGGGATCGCCGTCGAACGGCGACTT 10214 28 100.0 32 ............................ TAACCGCGCCCTGGCGCATACACACACTGGAG 10154 28 100.0 32 ............................ AGGAACGCGACCAGGGCGCAGACGGCAACAAC 10094 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 10034 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTGGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 112860-111271 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBNI010000003.1 Pseudomonas aeruginosa strain PAEM NODE_3_length_741923_cov_55.290825, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 112859 28 100.0 32 ............................ TCCAGGTCATCCAGTTCATGCGCGGGGTCAGC 112799 28 100.0 32 ............................ TGACCGACGCTCAGTTCCAGGTGCTGGGTAGC 112739 28 100.0 32 ............................ TTGATCGGCGTGCAGAACTTCGGGCGGCCCTT 112679 28 100.0 32 ............................ TGGTGGCGGTGCTGTTTGGCTCCTACGACGAA 112619 28 100.0 32 ............................ GTTATGAAAGCATACTTACACTATTTTGTGCA 112559 28 100.0 32 ............................ AGAAGCAAACACCTGAACAGCGCATTGAGCGG 112499 28 100.0 32 ............................ GCAACGGCACTGATGGCAGCGGCAGAACTAAG 112439 28 100.0 32 ............................ TTGGCTTGTTCGTTGACTTCCTCGATGCCCCT 112379 28 100.0 32 ............................ AGGGGCACAACGTCTTCGGGCCGACCTCAATC 112319 28 100.0 32 ............................ ACCGACGGCGGTATTGACTGGAACGCGTTACC 112259 28 100.0 32 ............................ TCCATGCGGAGCAGGTAGCGCACCCACTCCTG 112199 28 100.0 32 ............................ ACGACCTTGCCATCGGCCTCGATGCTGGTTCC 112139 28 100.0 32 ............................ GCCCGCTGGGGAAGCCGCAGTTATCCGGAGTA 112079 28 100.0 32 ............................ ATGCTCATTTCGCCACCTCGATTCCGGCTTGT 112019 28 100.0 32 ............................ AGGTTGACCAGCATGGCCGGCATCGACAGCGT 111959 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 111898 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 111838 28 96.4 32 .............T.............. ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 111778 28 96.4 32 .............T.............. AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 111718 28 96.4 32 .............T.............. TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 111658 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 111598 28 96.4 32 .............T.............. ATCAGGTACAGCACCAGGGCACCGAAGACGTT 111538 28 96.4 32 .............T.............. CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 111478 28 96.4 32 .............T.............. TCGGCGAGGCGATCGATCATGCGAATCAGCAA 111418 28 96.4 32 .............T.............. ATCGACCACGACAGTGCTTCCCTGGTCTATTC 111358 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 111298 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.7 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //