Array 1 80411-80864 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHNC02000050.1 Leptospira weilii str. LNT 1234 ctg7180000005370, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80411 29 100.0 32 ............................. AAATTGATCGAGTGTAATATCAAGTTGCGGCT 80472 29 100.0 31 ............................. GCATCGTGGTGTGTCCGCTACGCATAAAGGC 80532 29 100.0 32 ............................. GAAATAAAATCATTCAAATACCAACTTCAGAA 80593 29 100.0 32 ............................. AGAGACATCTTCAAGAATATCCATTATCCAAA 80654 29 100.0 32 ............................. TGGGTTAATTTTAATGTTCCTAACCTGATAAC 80715 29 100.0 32 ............................. TTCTCATCAAAAGCGTCCTCGCCGGTGTAGAT 80776 29 100.0 32 ............................. GAGTTTGTTTTGATGTCACAGGTTTACAAAAG 80837 28 89.7 0 .................-........T.A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GTTCAAAAACAATGCATTCTGCTCTATGCGCAGCCCTCATTTCTACTCAATGAATCTGACTTAGAAATTGCGATCGCCCTCACAAGTTTAAAATTTATAGATCGAAGGATAAACCTATTCTAAATTTTTTTATAATATTCAATTCATATAATTCCGATATACATAATATTATGGTAAATAATTCTTCCCTTTCTAAACAAATTTGTTCCCACCTCCTTCAAAATGATCGGTTCTTTTTCTTTGGATCCGAAATTCGTTTTCACGACGATTTGTTTCACGAGATAATAGATTTTGAAGGTTTATCTTTTATACCCAAGCTAAGTCCGAATCGAAACCAGAAAGAACCTTAAATGATTCCGTTCTTTCAAGGTTTCTTGAAGGGGACGGTTTTTCTTTTACAAACCTAATCGATTTTGTGAACAAAAACACAAGACCGATCATACCTTTAAAAATAAACTCTAAGCTGACATAGTATGTAAAATACTATACGAACTTTTAGT # Right flank : AAAAATGACGAGAATAAAAACCTACCTTCGTTAGATTGAGAATTTTTACAACGTAGAAATGATGAATGTGGCTTTAAGTTTTTGATATTTCTGTTTTGGAAAAATTTCACTTTCTCAAAGTTGAAAGATAAACTTAGAAATTACGATCGGAATATAAAGAATATATCTTAAAAGTCCTTTGTTAATCCCGAAACGAAACAACACTTTTCGGAAGTCAAAAAGTTTGAAAAAGGGAACTGGTGAATCAAAGATAATGATGATTTACTAATTTATGGCGCATCGGAAATGATGAAATCGATATGCGAAATCTTATTGTCGTTTTAATTTTTATCGCAATTACCTCTTCCGGTTTATTGGCGAAAACTTCCGATTTCAAAGGCGAATGTAAACCAAAAGAATGGATCTGTATTCTTACCCGCAACGAAAATAACAAAGTAGAATTTTACGTCCAAAACCAAACACCTTCGGGAGAATATCCTTTTACAATCTATTTCAATTTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 194630-194792 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHNC02000082.1 Leptospira weilii str. LNT 1234 ctg7180000005398, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 194630 29 96.6 44 ........T.................... GCGACCTAAACAAATGAATGGTATAAGTTAAGACTTAACTTTTC 194703 29 89.7 32 ......T...T....A............. ATACCCCTTTGAGTTCAAAAACGCGGAAAAAG 194764 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================ ================== 3 29 95.4 38 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GGTTGTATTTTATTGGCCTCTCTCGCATTGAAAATCTCTGGTAAGAAATTTTCGATTCTTCTAAGCACAGGATTTATCTGGCTAGCAATCAACTGGGGATTGGATTTTTTAATTTTACTTCCGATGTCTAAGATGAACGCAGGAGACTATTTTATTCAAATCGGTCTTCGTTATCTAACTATGATTTTTATCTCCTCTACGATCGGTTGGGTTACGGATCGATCGATTAACAGATAGAAAAGAAAATCCGTCTGATTCAGAGTTTGTTTTAAAATCAAGACTTTGTTTGAAGAACTCGGCGGAAGTTTAACTTCCGCTTCGTAGAAAGTCGAACTAAAATCTTGAAATTTTTCTTTTATTTATTAGATTTTTCTAATTTTCGAACATATTGTTTTCGTATAAGATCGTATTTTTTCACAAACCAAGAAACAATTCACAACAAATAAAATTCCCATCTTCTGATAGTTCATCTTATATATGGTCGTTTTTATGTATCATCC # Right flank : GTGGCCCAGTGAACCAGAGCGAGAATCAGCAGGTTCTGAACATCGTCCAGGCGATGCTCGGTAACATTTCATGGAATGTTCGGGCGGTGTCGCTCGTGTGTAACAACGAAGCATCCGTCGTTCTGCACTTTGTTCTCGCGGAGGATCAGCCAGAGGACCGAGAAGAAATTGAGGATATCGGATTCGAATTCGAGGCGCTCCAATTTTCGAGGATTGATGTCGATGTGGTCGTTACCGTGAACGCTGGTCCATTAATAGATGGGGATACGCCAGGACGCATCGTTTACCTGCGAAAAGAATCCTGACCTGCATTGCCTGTCTTGCTCCCCACCTTTTTTCCCCACATGCGTGGGGTTGAACCGATCTATTAAATGCGTCAACATTGACGCATTTGCTTTTCCCCACATGCGTGGGGTTGAACCCGCAGAATATTTTCGTAGATTGTTTTCAAAGAGCTAATCTACAAACCTTGACTTCACTAAAGGTAATTGACTTATTAA # Questionable array : NO Score: 3.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 222247-223251 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHNC02000082.1 Leptospira weilii str. LNT 1234 ctg7180000005398, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 222247 29 100.0 33 ............................. GAGGAGCAACTGTAGGTGGAGCTGTTACTATTG 222309 29 100.0 32 ............................. ATACAGCGATTACATTCGGATTCAGTATTTTT 222370 29 100.0 32 ............................. AAAAACTTGAACGTCTCGAAAAACGGAATTCG 222431 29 100.0 32 ............................. GAATTATTACATTGCTTCCTAAAGATTTTGAA 222492 29 100.0 32 ............................. ACATCATTTGAGCTGCCTTACGATAATCCGCA 222553 29 100.0 32 ............................. AAAGTTTCGATATGTTTGTCGAACCCTTCGGC 222614 29 100.0 32 ............................. CGCAGGCTTCTTACTGGAAAGCTGAAGAGATA 222675 29 100.0 32 ............................. ATAATTATCAAAAATAATTATTACATGGTTTT 222736 29 100.0 31 ............................. GAAGAACAGCTGAATTAAAAAATGTGAATAC 222796 29 100.0 33 ............................. GAGATGGCATTATTAAAGTTCAAACTCCTCAAC 222858 29 100.0 32 ............................. AATGAGGCAAACTATTATTTTGTTTAAAAAAT 222919 29 100.0 32 ............................. TTTCATCTCCCATATTTGATTTGTGAGTTAAA 222980 29 100.0 32 ............................. GGACATTCCGCCAAATAAACAGATTAGATATT 223041 29 100.0 32 ............................. TTATGAGAGAGTGATTTTATTTTCTCAAATTT 223102 29 100.0 32 ............................. GAGTCTGAGTAGTCTATTTTCATACGGACTAA 223163 29 100.0 31 ............................. CAAAATGCTCACGTGTGAGCATTTTGAAAAC 223223 29 79.3 0 ............T.....A....A..ATT | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : AGATATACAAGACTTTATAGAGACAGCCCATTAAATACAAACGTGATTTGCCATATTTCTCCGGAAGTGGCTTAATCATCAAAATAGAGTTGTTGAAAAATTCTATAGTTCCAATTGACAAAACCGCTTCAATCGGTCGTTTTTATAAAACAAAAACGGATGGAGTATTAATTTTTCAACAATTCTACTTATCTCCACATATTAGAGTGTCCAAAGTTCCGCGTCTAAAACGCGGGGTTTCTGCTCAAATGAACGGTACTTTATTTTATAGGGATCAGTAATATTTTTAGACAATCTGCTTAGAGGTTTTTCACACTTTCAATTGGTTTTAAAATAAGGCATCTTACTTTCACTCTTTTCAATTTCGTTTTTGGTTTATTGGGCTTGATTACGGTTACGTTTCACACGTTCTTAGTAAGAGGCGATTTGCCATCATAGATTGACTCGAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGCTTTTAGC # Right flank : TTTCAGTCAAAACAAATAAGGACGAAACAGATGAGTAATAAGAATTCGGAAACGGAATCCAATTTAGAATTTTCAATGTAAAAAAACTAAAAACCAGTTTCAAAACCTGAAAATGTAGGAACTCCCACCAATTTTAAACAAGAGGGAAAACCGCACAAAAGCGGTGTAAACTCCAAGGACGTAATCTATGGGAACTCCCACATTTTTTTAAAAACTTGCCGGACACGAAAGATATTCTTTGAAGGTTTCGAGATGAACTCTAAGACAAACACAATACGGAATCAATTCAAAAAAAACCTTTTCTCAAGTTAATCCCGTATTCCAAATACGCTTTGAGACAACAACTCATGTTCATCCAACCTTGACAGTTCATATAAGAACCGTCTAACGCAGCTTGAGATACCTTCCAACCGGATTCGGTAATTTTCACAAGAGTATTGTTTTGATCCAAGGATTCGAAAATCATTTCCGTTTTGGTTTTGTACCCGCCAACAGTTAGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //