Array 1 10259-6968 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQC01000161.1 Methanosarcina mazei strain 1.F.A.1B.4 scaffold44_1_size26188-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 10258 37 100.0 37 ..................................... AGTGACGGGGAGACTTGGAGACTGCCCGCCGGCACGA 10184 37 100.0 35 ..................................... ATAAAATATATCGGCATGCGTATCCAGAATTTCAG 10112 37 100.0 35 ..................................... TCAGAGGCGAGATGCTTGATACTGAAATTGGGTAT 10040 37 100.0 34 ..................................... GAAATTACGCACCTTATAGACACAAACTTTTCAA 9969 37 100.0 34 ..................................... CCCCAATCTACTGAGGAGATCCCGAATCCCTGAG 9898 37 100.0 34 ..................................... CGTCTGTGGGCATGAATCCGGCGTTTGTTACCTG 9827 37 100.0 35 ..................................... TCATAAGATACTGTAAATAGATAGGATCAAGGGAC 9755 37 100.0 39 ..................................... TTACATTATACTCTATTTGTGTTATTATATCTATATTAT 9679 37 100.0 35 ..................................... TAAACACTCTGCAACAACTGAGTATGCTAATCCAA 9607 37 100.0 35 ..................................... AGAAACTCAAAATCTGCGTTTTCGGCTGTGATGCA 9535 37 100.0 36 ..................................... CGGCGACTCCGGTAAATTCATACAAAGTTGTAGAAG 9462 37 100.0 36 ..................................... CTATTTTTAGAAGGGATCTATGATATCAATACCCGG 9389 37 100.0 37 ..................................... AGTTCGTGTCAGGGAATAGTTTGTGATAATCTGATGT 9315 37 100.0 34 ..................................... TGATAACGCCTTTTGCTGCATCCCTTGAAGTGTT 9244 37 100.0 35 ..................................... TTTCAATTACCACATTAGCTTCTAACTGTTCAATT 9172 37 100.0 35 ..................................... ATGCCCAGCCCTCGACACCCGGACATTGATCTTGA 9100 37 100.0 34 ..................................... AAAAATTTAGTTTTGACAGCAAGCCGGGATTCTG 9029 37 100.0 35 ..................................... ACTGTTGAATTAATTTCGATGTCGTTTTCTGAAAA 8957 37 100.0 36 ..................................... CAACGGATTAGGACCACGAAGAAAAGAATTTTGAGT 8884 37 100.0 36 ..................................... CAGATGCTACTCTTGCGGCATCGGGAGACAGTCTCA 8811 37 100.0 35 ..................................... CCCGGCCCCGTTGTGACCTCACAGAATATATTCAT 8739 37 100.0 35 ..................................... TTAAAAAACACTGTGAAAATCTGAAATACATTGAT 8667 37 100.0 34 ..................................... CTGTCGAATGTGTCTGCAAATCTTGTGTTAAGCG 8596 37 100.0 36 ..................................... ATAGATTGTTCAGTTGTCAATCCGTTGTCAGCTTGT 8523 37 100.0 38 ..................................... TTTATATGTTAACACTGTTAACGACTGTCTCAAAAAAA 8448 37 100.0 35 ..................................... TAAAAAAGAAATCAATAAGAGAATAACGTTTTTCA 8376 37 100.0 35 ..................................... TATCTTTGAAAAAATCCGTATGTACGGGAAGCTTC 8304 37 100.0 36 ..................................... CTTCATCTAGTTTATTCCGCAAAAGCTCCTTTTCTG 8231 37 100.0 37 ..................................... GTGGTCCTATGATCAATGCAAGATAGCCGGGATTGAT 8157 37 100.0 36 ..................................... TTTGGATGGCTTGCCGTCCTCTATACCTTTCATCTT 8084 37 100.0 35 ..................................... CAGCTAAGGTTTTACTCATATCGTGTGGCTCCGAC 8012 37 100.0 35 ..................................... ATTGATACGGAAGTGATGCGGTATAAGCTCCCGTT 7940 37 100.0 34 ..................................... CTGCCCTCAAGGATCAGGCTTTAGAGGTTGCAAA 7869 37 100.0 38 ..................................... TACCTTATTGATACTTTCCCAGATAGCGTATAAAAGCC 7794 37 100.0 36 ..................................... AAATTGCTGTACCTTCTATAAAGTATAATGATTTAT 7721 37 100.0 35 ..................................... TAAAGAGGGATGATAAATTATGATTACAATCGTAG 7649 37 100.0 36 ..................................... CGTCGGTGGGCATGTATCCCGCGTTTGTTACCTGTT 7576 37 100.0 31 ..................................... TGTCACAATTGTAGTGATATTAATAGCCCGT 7508 37 100.0 34 ..................................... TCATCAGAAAGCCCGCGTGAATACTTCATTTTCT 7437 37 100.0 34 ..................................... TTGCAGGTTTCACCGGTTATGTCACATGTTACAG 7366 37 100.0 35 ..................................... CGGTTCAGGACTCGGTAGAGCACTATTCCCGAAAG 7294 37 97.3 35 ..................C.................. TCTGAGGAGACCACTAAAGCCAGTCGGACCCACTG 7222 37 97.3 36 ..................C.................. AATGTATACGTCCTATATTAACAGGTATAAAAACGG 7149 37 97.3 36 ..................C.................. ATACTTTCATCAGTCAATATTTCATTTTCGTATAGA 7076 37 100.0 35 ..................................... AATGGATTTGGAGACCGTTCTCTACTTGGACTTCT 7004 37 91.9 0 ......A...........C................G. | ========== ====== ====== ====== ===================================== ======================================= ================== 46 37 99.6 35 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : TTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGAAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAACATCCTGAAAGGAAGTGTGAAGATACAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 2045-399 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQC01000140.1 Methanosarcina mazei strain 1.F.A.1B.4 scaffold45_1_size25517-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2044 37 97.3 36 ..................C.................. AAATTTTCACAGTGTTTTTTAATAAATGTCTGACTG 1971 37 97.3 37 ..................C.................. ATAAACTAAACACAGAAACGATTCTAGTAGACGGAAT 1897 37 94.6 37 .....A............C.................. TATTAAAAAATAGTATAAATAGTAAGTCGGTTGAAGT 1823 37 100.0 36 ..................................... TTAAAAAATTTCTTCTCCTTTGCAGCGTACCATTTC 1750 37 100.0 37 ..................................... ACCTGTTTCATTTATAAGCCTCTCTGTCTTTTAATTT 1676 37 100.0 37 ..................................... TGAAGGAAAACATCCGTGAGCCTGTACGGATACCCTT 1602 37 100.0 35 ..................................... CCCATTCGTGGCCCACCCCTCCAGGGTTTGAAGCT 1530 37 100.0 38 ..................................... TAAAAAAACTTGATGAGATTATTAACCCCAGCCCAGCA 1455 37 100.0 35 ..................................... TTGTCCTTGGTTTGGATTGTGAAGCCTTGAAGTAA 1383 37 100.0 34 ..................................... ATGAAAATCTAAACGATGAATCTAATACACTTCC 1312 37 100.0 35 ..................................... AAAGAAAGTATGACGGCACAGCAGGTATAATTAAC 1240 37 100.0 34 ..................................... TCGTTATCGATTATACTGACCGTGATAATTTACG 1169 37 100.0 37 ..................................... TCCCTGCATTTCTGATCGTATTTTGTAAAAGAATAGA 1095 37 100.0 38 ..................................... GTACACTTAGCATGTCCTCTAAACTCGCTTTTTCCGTT 1020 37 97.3 39 ..................C.................. CACGGTAACGTTTTTTTATGTCAAAAAAATAATCCGGAT 944 37 97.3 34 ..................C.................. CTTGGTTACTTTGTGGACCTGGGCGAATCCACAG 873 37 97.3 38 ..................C.................. AATCTGCTATATTATCCAGTATTACTCCATTAATTACT 798 37 97.3 34 ..................C.................. TAACTCTGAGCATAAGAAAGAATTTCGTGATCTG 727 37 97.3 36 ..................C.................. TTACAACGTCTGCAAGCTCTTCTTTCATGTGTTCGT 654 37 94.6 35 .....C............C.................. TTCTATGAACGAGATTCCTGTTACTCTTTTTGAGA 582 37 97.3 35 ..................C.................. TTTCGAAGAGCGTTTCTTACTTCTTCTGCTTCTTC 510 37 75.7 37 TG...A...GT..C....C.......G.........T GCAGACGAAAAACGCAAATAAGAGTACAGACAAATTC T [494] 435 37 83.8 0 .....AT.A..................A.....T..T | ========== ====== ====== ====== ===================================== ======================================= ================== 23 37 96.8 36 ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : TTCTATTTCTTCAAATTTTTCTAAAGAGGTTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAGAAAGCAGCCGATGCGAATCTAACTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCAAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATGTGGACTTCAAAGAGTTTATTACAACGGGAGCGCAGAGGGTCACGAATACCCCTTCCTTTAGGTAGGGGATGAAGTGAACCCTCGCCTCTTCGTTTTTCTCTTTAAATCTCT # Questionable array : NO Score: 8.84 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //