Array 1 27104-25885 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTKO01000006.1 Staphylococcus pseudintermedius strain 2001-08-299-1 contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 27103 36 100.0 29 .................................... TCATTTCCGATTAATGTGTTTTCTGGATT 27038 36 100.0 29 .................................... CGAAACAAGGTAAACCGCCTAAAACGGTG 26973 36 100.0 30 .................................... ACAAGAAAGCACAGATTATCAACTTATTGC 26907 36 100.0 31 .................................... AGAAACTTCACGTGTACCCTCTAAACCTTGT 26840 36 100.0 30 .................................... ATGAATCGTTCCTGCTCCCATAACCGACAA 26774 36 100.0 30 .................................... CATGTTTTTAGCTTGCCCTTGAATACCTGT 26708 36 100.0 30 .................................... ATTCTTCGTGAGGAATCAATACTACGTTTC 26642 36 100.0 29 .................................... GATAAGAAAGATAATGTGTACATGACTCA 26577 36 100.0 30 .................................... AGGTAATCCGGAAGAAAAGCCTGGTATTGT 26511 36 100.0 30 .................................... AAATTATCACAGGTGACTGGTCTGGGGCGT 26445 36 97.2 29 ............................A....... AAATACAGTTGATTGTGTCTGAGGATAAC 26380 36 97.2 29 ............................A....... GCTTTTTCAACTGATGCGACTGGTTTCGT 26315 36 97.2 30 ............................A....... AATAATCATGTCACGCGCATTAGTTGGTCG 26249 36 97.2 30 ............................A....... TGTGCTTTTAACAAGCCTACGTGATCTTGC 26183 36 97.2 30 ............................A....... AGCTGACGTAGACGCTTTTTCGTCAATGCC 26117 36 100.0 29 .................................... AGTTGCAGATATTGCTGATATTACGGAGA 26052 36 97.2 30 ............................A....... TATTTCTAGCGTCGGTGTTGCTGTTATTAC 25986 36 97.2 29 ............................A....... GAATTAGAGCGTATTAAAGATGAAGTGAC 25921 35 88.9 0 ..........................-.CA.C.... | CT [25888] ========== ====== ====== ====== ==================================== =============================== ================== 19 36 98.4 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CTTCTTTATAATCGTACATCAACCTCACTATGTCTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTTTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAAATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGATTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //