Array 1 668394-669682 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061025.1 Streptococcus thermophilus strain 13496 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 668394 36 100.0 30 .................................... AGAAACGAGAAAAAAGATAAAAAAATTTTA 668460 36 100.0 30 .................................... AACCATCATTTGATGCTGCCATGTAGTTAT 668526 36 100.0 30 .................................... AATAAGGAGGAAACCTCTGTTCTTTCAATC 668592 36 100.0 29 .................................... CTTGCAGAGATGCACATGCAGTTAAATAT 668657 36 100.0 30 .................................... CTTACTATGACATGTTCAAAAAGCAACTTC 668723 36 100.0 30 .................................... ACTGAATAGCCAGTTTCACTAGTGTTATCA 668789 36 100.0 30 .................................... CTATCATCCGTGATATATAATATACATATA 668855 36 100.0 30 .................................... AAATGTCTCTAGCAACGATATTAAGCTATA 668921 36 100.0 30 .................................... ATTCCAGTATTGAAAAGATTAGATGAAGTA 668987 36 100.0 30 .................................... CGTGTCGAATATGACGATAATGACGATGAC 669053 36 100.0 30 .................................... CTCCTCTTAAAAATTATAAAATTTCATAGT 669119 36 100.0 30 .................................... GAAGAGAAGCAAGAGCAAATTGAAAAGATT 669185 36 100.0 30 .................................... TCATATATCGTCATTTGTTCTACTTCATCA 669251 36 100.0 30 .................................... TAATCCAAAGAAACATAAATGCTAATGAGC 669317 36 100.0 30 .................................... TTCATTGTTTGTTTACTCCTAATTTTTCTA 669383 36 100.0 30 .................................... AATGTGCTTAACATTTCTGATTGCGCCTTC 669449 36 100.0 30 .................................... TGCTTTCGTCAAAGGTTGAGTTCGCAATGC 669515 36 100.0 30 .................................... AATAGATAGTGAAACTGATACCGTCACTGT 669581 36 100.0 30 .................................... TGGAAAATAGTTAAAATAAAGAAAGGAAGT 669647 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTGAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGAGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1414836-1413217 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061025.1 Streptococcus thermophilus strain 13496 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1414835 36 100.0 30 .................................... AGAATACAACATTGTCTTAATAGGAGACAC 1414769 36 100.0 30 .................................... GAATCATGATTGGTTTATCTGTGGGCTTCA 1414703 36 100.0 30 .................................... AAAGAAATTAAAAAAACCTAGCGAAGCACT 1414637 36 100.0 30 .................................... TTCGCATAAGACTTCTTCAAACCAAAACAT 1414571 36 100.0 29 .................................... GTCCATAGGTATTTCCCTTTAATTAAAGT 1414506 36 100.0 30 .................................... TAGAGATGACGACGGACTACCTGGCAAGAA 1414440 36 100.0 30 .................................... TATCCCAGAGAATGGAAGAACAATTATAGA 1414374 36 100.0 30 .................................... CTTCTTAAAATTGAATAATTCGAAGCACAT 1414308 36 100.0 30 .................................... AGGTAACATTGGTTCAACAGCAGTCTAATT 1414242 36 100.0 30 .................................... TCGTTACCTTGTCTTTGCAAATCACGCAAA 1414176 36 100.0 30 .................................... AATGAAGAAGCCGATTCAAGCTCAAGGGTC 1414110 36 100.0 30 .................................... TATTTCTGTCCGATACGAAGTATCAGGGAC 1414044 36 100.0 30 .................................... TACGCCCGTTTGGATTGAACATGATAGAGC 1413978 36 100.0 30 .................................... GAGCCTACTAATGATTACATTTTGAGGACG 1413912 36 100.0 30 .................................... CCAAAGAATGGACCACCTTAATGAGAATAT 1413846 36 100.0 30 .................................... TTTCAAAATCTTCGAATAGGCAGTCGAGCA 1413780 36 100.0 30 .................................... AAAATGTACAAATTTTCATGCTAGGGAATA 1413714 36 100.0 30 .................................... TACAGCTCTTGGTTTCGTCTATCCTTATGT 1413648 36 100.0 30 .................................... CGCTAGGGTCTCTGGTGACGCTGAGGTCTC 1413582 36 100.0 30 .................................... CCTGACGCATATGGAAATCCTAACGGTCAG 1413516 36 100.0 30 .................................... AAAATCATCTAAATACATGTGTGTAACAAG 1413450 36 100.0 30 .................................... AAGCACTGGACGACAAATAAATAATTGAAG 1413384 36 100.0 30 .................................... GAACAAGAAACTTATGAAGTCGAAAACCGA 1413318 36 100.0 30 .................................... CAACCCAGACATGAATGTCATTAGATATGT 1413252 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //