Array 1 264960-266760 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFBC01000008.1 Rhizobium album strain NS-104 Scaffold8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 264960 31 100.0 35 ............................... ACCGGCAGGCCTGTATCGTCGGCGGCTGGGTCCAG 265026 31 100.0 34 ............................... GCTGGCCCTCGATCTTGAAACCAGCGTCCTCATC 265091 31 100.0 33 ............................... TCGAAGATCGACGATTTGACATCGCGCATCTAT 265155 31 100.0 35 ............................... ACCTACTACACCTCGGCAAGCGCTGCGGCAATCGG 265221 31 100.0 34 ............................... GATTAATTCTGCAGTCGTAGCAAGCTTCGACATT 265286 31 100.0 35 ............................... GACATCAGCGAGATCGCGCGAAAGGATCTCGTCAC 265352 31 100.0 36 ............................... TACCTCGACGGCATTCTGCCGGCGCCGTAAGCGACC 265419 31 100.0 35 ............................... CAGCCTGACGGCGTCAACAGTGACATGAGCTACAC 265485 31 100.0 36 ............................... AGCACCCCTTGACGATCGAGCGGGTTTGGTCCGGCG 265552 31 100.0 35 ............................... GTTGTGGGGCTGCGGGGCGAGTGCTCTACCTGGAT 265618 31 100.0 36 ............................... GAAAACTCCAGATGGATGCGTCCGCCGAGCGTGAAG 265685 31 100.0 35 ............................... CGCGTCTTAACCCGAAATATGTTGATGCCGTCCTC 265751 31 100.0 34 ............................... TCGAAATTGACAGCTGTTTCATCGGAGTTTCCGG 265816 31 100.0 34 ............................... ATGTCCGTGTTTGTGCTCCTGACAACAAATCTGT 265881 31 100.0 34 ............................... ACGGATCGCGACAGCATCGACCACTACCTGACGC 265946 31 100.0 34 ............................... AGCTTTCCGGACCGCAGATCCGCCGCCTTTCCGG 266011 31 100.0 33 ............................... ACGGCGTTGACCCGCGAAACGACGCCGGACGAC 266075 31 100.0 36 ............................... ACGCGCGGTGATCTGCTGAAATGCAGGAAGCGGCAC 266142 31 100.0 32 ............................... TGAATCAGCAGCAGTGGACCGGGCCGACGACG 266205 31 100.0 36 ............................... GGTCATTGGTCCCAATCCGCTGAAGCTCGCCACGAG 266272 31 100.0 36 ............................... AATGCCGCCGTGAAGCTGAAACCGAACCCAACCCCC 266339 31 100.0 34 ............................... CGAGCGCGTGAAGAAGCGCCAGCACCTCGAAATC 266404 31 100.0 35 ............................... ACTCAAGCGGGAACTCTTCTGATCGATGCTGCGGC 266470 31 100.0 34 ............................... AATCGAGACCTCGCCATCAGTCGTCGGGAGCGGT 266535 31 100.0 35 ............................... TCAACGAAGTGCGCGCCACCGTCGATGAGTTGATC 266601 31 100.0 33 ............................... GATCTCGGGATCGACGGGCTGCAGGCGGTCACT 266665 31 100.0 34 ............................... ACGATAGACCTCTCGCTGTCGCGGTCGATCCGCA 266730 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 28 31 100.0 35 GTCGCCTCCTCGCGGGGGCGTGGATTGAAAC # Left flank : GACCATGCTGGTGCTGGTGACCTACGACGTCAACACCATCGAAGGAAACGGCGCGGCCCGGCTGCGCGGCGTCGCCAAGGCCTGCCGGGATTATGGCCAGCGCGTCCAGTTTTCGGTCTTTGAGATCGAGGTCGATCCGGCGCAATGGGTGAAGCTGAAGGCGCGGCTGGAAAGCATCATCAAACCGGAGTTCGACAGCCTGCGCTATTATTACCTCGGCGCCAACTGGCAGCGGAAAGTGGAACACATCGGCGCCAAACCGGCCACTGACTTGGGCGGTACGCTGATTGTCTGACGCCACGGGCCCGTTGAGGAGAAGGAGCGCGAATCGCAAGCGTGTCGAAAAAACCGGCACTGTTCGCACCCATGCCAGCCCCTTGAAATCGTAAGAAAAATCTTCCACCCGGCATTTCCGGGCGACGATCCGCTTGTGTTTTTTGGGCGAATGCGCGCGAAGGTTTTGCTTTTCTCTGTGCCGGCAATGGGTTAGCACAGAGGCC # Right flank : ATTGCCGGCATTGCGGCGAGTACGACGACGGGATCGTGTCCCAGGAGATGGTGTAGCTTCGGCGATCGCCGTGCCTTCCGGACAGAGCCGGGCATTGATCAGCTTGCTGCTGGCAGGCTGATGAGCGGATCATCGCTCATCGCGGCGATGGTTTCCAGTGTCATATAGCGGGATCGTTGGACTGCCCATTCATCGTTTTGTTCGAGTAGCAGCGCGCCAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCTCGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 167195-166903 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFBC01000017.1 Rhizobium album strain NS-104 Scaffold17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 167194 31 100.0 34 ............................... GAGGTCGAGCCGCGTCGGCAGGTGCATACCTTTC 167129 31 100.0 34 ............................... TTCTCATCGGCCGTGAAGCCGAAGACGTGCCACG 167064 31 100.0 35 ............................... TGGCGGAGATCGCCTATTGCCGGCAGGAACAGCGC 166998 30 96.8 35 .............-................. TCGAAGGTCTGACCGCGACTGTCGGGGCAGGGCAT 166933 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 5 31 99.4 35 GTCGCCTCCTCGCGGGGGCGTGGATTGAAAC # Left flank : GCTGACCTCCAGGGACATCAACTTCTCGGCAGCAAAGCCGATCATCTCCCGGAGCAAATCGGCATCAGCGCTCTTCTCAACGAGCGAGCGCAGGGTCATCATGTCGTCGGTCATCGGTGATCTTTCCATCAGGTTGGTCTTGAACAACCCGACCCTACCGGAAAAACACTGGTGACCGCCGATACCCTGATACACCACCTCCTGGGACACGATCGACGACGGTTGC # Right flank : GATGACCTTCGCCTGCAGCAGAACCAGAACGGCAATAGAAGCTGCATCATGGCCATGCGCGAGGCAAACATCGGAGCGCCCAACCGCACGATCACTCGCGTCATCATAGACGATAACAATCTGGATTCGTGGGCCTTGAGCCGCCCTTTTCCTAGGAGTGGTCGACGCTTCCTAGGAGAAACCCGGATCATAGGTCCCGATGACGACCGCAAATGCGCCCTTCTGCTCTTCAAGCACGGCGATCTTGGAACGCGGCGCTTCGATCTCCGTGCCGATTTCGCTCTTCTTCCTTTTCAGATCGCCAACAACATCCATACTCACAACTCCGGTTTCTTCGGCCGGAGACTACAAAAGCGTCAAGGAAATTACTTGTGGCAACTGCTACATAGTGGCGCGTCAAAGAGTTGCCGGAGGGTGTTTCAATCCACGCCCCCGCGAGGAGGCAACAACAGTCCGTCCTCAATGAATAGCTGGAGCGAATGGTGGCTGCAAGTAAGACA # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCTCGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 252443-254457 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFBC01000003.1 Rhizobium album strain NS-104 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 252443 32 100.0 34 ................................ GCTCGATGCCGTGGGACGAAGCGCTCCGCTGGTA 252509 32 100.0 34 ................................ TAATTCGGGAATATCGAGCGAACGCCACCATCCG 252575 32 100.0 34 ................................ GTGACGTGCGCGGTGATCATCGCGCTTGTCGTCG 252641 32 100.0 34 ................................ ACGGCCTCCGCATGATGGACCAGGCCGGTAAATG 252707 32 100.0 34 ................................ ATTCACCCAGGGCTTTGCGATCTGCACGCCGCGC 252773 32 100.0 33 ................................ TCGCGTACGAGGCGCAATTGATCGCTGCAGTTG 252838 32 100.0 33 ................................ CGCTGAGATCCGTAGACTTGGTCGTCAGGATCG 252903 32 100.0 35 ................................ GCCAAACAGATGGACGCGGTTGTCGCGTTTCTGCA 252970 32 100.0 34 ................................ CTTAAACATGTCCTGGAAGCACTGAAAGGGCACC 253036 32 100.0 34 ................................ TGCGTTCTGTGTAACTGAAGCCGCCAAGCAGGAG 253102 32 100.0 34 ................................ CGGTGACCGGGTACGGCGACGTCGCCCTGGAGGG 253168 32 100.0 33 ................................ TCGATGCGCAGGATATGTACCAGGAGCGCCTGC 253233 32 100.0 35 ................................ GACATTGCTCAGAAAGCAATGCAGATGGTCGGAAC 253300 32 96.9 35 ...................G............ CGGCGGCAGCTATGTGCATTGGGGCTTTAAAAAAG 253367 32 100.0 36 ................................ AGCTACCGGCTGATCACGGCCTAATCCACAAAGGAC 253435 32 100.0 33 ................................ GTGATCAGGTGCCGGTATGGGTCGGCCTTGCAC 253500 32 100.0 34 ................................ CCCGCACCGGGATTTGAGGTGCGGGAAACAATGT 253566 32 100.0 35 ................................ CGGTATTTCTGGGATGCGGCCACGGCGCCATTCCG 253633 32 100.0 34 ................................ ACGACGATTGCCGCCTGCGAGTTCGTCGATTGGC 253699 32 96.9 33 .........T...................... ATGCAGGCGTGCCTGGCCTCGATAAGTCGTCGC 253764 32 100.0 34 ................................ ATCGCTCGGAGCCCTCCGTAGTGGCGGCGCGGTC 253830 32 100.0 35 ................................ AACGTGGACTTCGACCCGTAGGCCATCTGCCAGAA 253897 32 100.0 34 ................................ CTGTCCTACATCGGCGTCGAGGCTGACGAAGGCC 253963 32 100.0 34 ................................ CGGCCAGGTGATCGGCTCGCCGTCGAAGCGGATG 254029 32 100.0 34 ................................ TGCGCAGGCGTGAAGCATGCGGCACATGTCCGCG 254095 32 96.9 34 ..............................C. TCGAATGTCGGCGCCCGCTTTGCTGCGGCCGACA 254161 32 100.0 34 ................................ GTAGCGATTCGAACGGCGAGGCTCCGCGCTCTCG 254227 32 100.0 34 ................................ TTCCCAGTGCGTCACTTCCTCCTCATGCGGAGCG 254293 32 100.0 35 ................................ TCGGCGATTTCGGCGCAGATGGCCGAAACGAGGCG 254360 32 93.8 32 .....................G..G....... CGGAACTCCTGCGCCTCATCGACAACGATCTG TA [254371] 254426 32 78.1 0 ........C.CC.AA......C....C..... | ========== ====== ====== ====== ================================ ==================================== ================== 31 32 98.8 34 GTCACCCGTCGTAGGCGGGTGTGGATTGAAAC # Left flank : AGCGCGGCGAGCGCGACGTCTTCACCCGTCGCCTCTACACGCTGAAGGGCCAGCAGACTTTTGACGAGATCAAGCGCAAATACGAGCGGGAGCCGGAATTCCGCACCGCCGTCGACCGCTACATCGCCGATTTCGAAAAGCTGCTCTCGGATGTCGCCCGCACCGACCGCGACAAGACGGTGACGCAGTCGTACCTGACCTCCGACACCGGCAAGGTCTACACCATGCTCGCCCACGCCGCCGGCCGCTTCAACTAAGCCGCCGAAAGCCCTAAATCCCGATCCCGGCCTGCTCTCCGCGGCGCCGGGATTTTTTATGGAAACCGTGCGAACGACAAGCGTGCCGTCTGGAGCCGGCAGGCTCGCGCTAGTATAACGCACTGTAATTCAATCTATTTTTCGAGAGTCCGCGCAATCACCTCCCGCATACCGCAAAAATTCCCGCCAACCGCGCGCGCAACTCCTTTTGTTCAACAGTTCAAAGTGCTTAAACGGCAGACA # Right flank : CGAACAGGAGCGACGCGACGAGGTCATGCAATGGCCGGCGCCATCCGGGAATTCTCCGGATGGCGCTCTCGGCAGCGGCTCAGATTGCCCGCAGCGTCCAGTCGACGATCTCGGCGGTCACCGTGGCAAAAGCGGCGTCGAGTGCGCGGATGAAGGCGGTGTTGCCGGCGCTGCCGGCGACGGGGGAAGCGGCTGAGAAGATTTTCTGGGCGATCACGGTGCCGTTGCGGTCGTTGAGGATTTTGACGGAAATCTCGACATTGGCCCGGCGCCCCGCCGTATTGATCTCGAAGGCGCGGATATCGCTGACGATCTGGTAGTCGATCGCCAGCCCCTGCCCCGGCTTGCCGACGCCGCCGAGCTTGCCGGTGTCTTCGAAAGCCTCGACCAGCTTGGCCTGGACCATGCGCGGCAGCTTGTCGCTCCATTGCGCCTTCGACAGATACTGGATCTCCGAAGTCGAAACACGCACCATCACCTGATCGCTGCCGAGCGCGCTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCCGTCGTAGGCGGGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //