Array 1 1-246 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRF01000158.1 Leptospira noguchii strain 56682 Contig158, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 1 29 100.0 44 ............................. ATCTTTACATTTGCCAAGACTAGATGATGCCGAAGAGTTTCTTT 74 29 100.0 43 ............................. CCTGATTGTCTGGCAATACAAATGACATCCGTTTGGTTTCTTT 146 29 100.0 43 ............................. TTCATGGTGATAGGAAATCAAGACGCATCGAGCAGGTTTCTTC 218 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================ ================== 4 29 100.0 44 CTCTTGTTTGAGAGGAAGTGGATTGAAAC # Left flank : | # Right flank : CGTTGTAGATGTCAGTTCCTGCGTATTGAACTACTGTTTCTTCTTCTTGTTTGAAGAACTACATAATAGAGTGTCTAAAATTCCGTTCCTGAAACTGGATTCCTTTCAAAATTTATAGTACTCTAATATATAGGATGAATACTATTTTAGTGATCGGATAGGCAAGAATGATAATTTTTAAGTTTTGTGGTAGTCCCTACAATTTTATGAAAATTGAATATCAAACTGTTGCAGGCTAAATGTATAAACTATGACTGATTTCCATTGAACAAAAGTTATTAGGAAAAAATTTTTCTAAAAATAGGAGTTCCTACATTCATTTTTATTTTTACAGACTGAGGTCTCTTTTTCGGAGAATGACTTGGTTTTATAAGTTTTACTGTGAAAATTTAGTATTTGTGGTAGTTCCCACAAATTAAGTCACATTGTAAATATACAGATTTTAAAATACTCTTTTAATTCAATTTCTGTATCAGTTTCCCAAATCAAAAAATTTTACT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTGTTTGAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 6535-5997 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRF01000025.1 Leptospira noguchii strain 56682 Contig025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 6534 37 100.0 37 ..................................... ACAATTTAGTACTGCAAACGTATTCCCTTGCGTAAAA 6460 37 100.0 34 ..................................... AAAACCGATTTCCATCGTAACACCGTTTCCAGAA 6389 37 100.0 33 ..................................... TCGTTTTGATACGTCCGAAATTGGTAATTCTAC 6319 37 100.0 33 ..................................... TAAGAATCCATAAAATAAACGTAAAGGATCCGG 6249 37 100.0 35 ..................................... TAATGTGATTCGATTACTCATCTAAAAAGACAGTA 6177 37 100.0 35 ..................................... AGTTACATTTAAAACCAAAGAAGGAGCCGTAAATT 6105 37 100.0 35 ..................................... CTTAGCGATTCTGACGGCGAGATCGATCTCGAATT 6033 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 100.0 35 GTTTCTTCCTTGGTTTAAAAAGGAAGTGGATTGAAAC # Left flank : ATTGTAACTAAAGACAATATATCGCATTATGCTTCTTTCATGCAATTTATTGACTGGAGTTAAAAACGGGTTCGAATTCGCCTGGTTTTTTTTCTCTGAATTCACAGGATTGATGTGTAAATTATTAGATTGGGTTATTTATTATGTAGTCATAACTTTATAAATGAGTTTTTAGATTGAATTTCTACTAAACTTTTAAATCAATTCTCTGAAAATTTATCCCCTAGACATCCAGTTACTTAGCCGTAAAACTAAAGAGTTTATAGTTTTATATTCTTGACTTTAAAAAGTGGACCATTTTATGATGAATCGCTTTTTGCGAACCTGTTTCTCCTGATAAATTGCGGCCCATTCGCGCTCAAGCGAATAACTACCGTTTGTCGATTGAACCGTTTCGCTTAACATTTATACAGTATGTTGTCAACAGGTTCGCGATAATTATGTCTAAAAAGTCTAATAAAGCTTTCCCTAATGCATCAATTAGGGCCTGTGGTACCGCT # Right flank : TTTGAGATGAGTTTCGTTTAAAATTTCCAGAATTTATCTGTAAAAATCATGGCTTACTTTAAACTTCTGTATTCAAAAGCTGGAAAGAATACTTTAGAAAATCAAGATATAATTGATTACAAACTATTTTAAAAAACCCTAGAATAATCTACATTTTAAGTAAAGATAAAGTATTTTCGAGATGGCTTTTACTAGTTCCTACAAAATTAGATACTCATAAATGTTATGATAAAGTGTCGGTTAATGTGTTTTCGGTTAAATCCAATGCGAAAGCGATTGAGGCGGGATCAACAAATTGAATTCAGGATTAAATTTTGTTTTCGAGCGAACCCTCAATTTGTTGATCGGAGCTGAAAGCGCGGTCCGGCAGAGCCGGATTCGCCCCGGTTTTCTTTCTCTGAATTTCACACTATTGAAGTGTAAAAGATTGAGTATTTTATTATATAGTTCTGAGTAGTATTTCTAAAAATTCTGTTTTACCATTTAGCCCTCTGAACACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTGGTTTAAAAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 4981-5453 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRF01000045.1 Leptospira noguchii strain 56682 Contig045, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 4981 37 100.0 33 ..................................... AAATATTCAAAATCAAAAAACTCAAACAAAAAA 5051 37 100.0 36 ..................................... ATCTTCTTAAAGCTTTCGTAATATAGTATTGCATAC 5124 37 100.0 37 ..................................... TGTTTTAATCTTCGTACTAGTTCCAACTCTGGCCCAG 5198 37 100.0 35 ..................................... GCATAATGAACGGAAACATTCGTTTTTGTGTTGTT 5270 37 100.0 36 ..................................... TCTCTGTTCTGCGAATTGATTCGTTGCCTCTGTGTG 5343 37 100.0 37 ..................................... TCCGAATTTAAACGGACTTAGTCCGAACGAAGGCCGT 5417 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 100.0 36 GTTTCTTTCTCTTGTTTGAGAGGAAGTGGATTGAAAC # Left flank : TAATATTGTTTTTGGGGTATTTGTAGGATTGTTCTCAAAACTAAAAACTTTGCGAATGTCTATTGGTTGATAGGACTGTTTGTTTTATTGAGTTTAGATTCAATTGTTTTCAAACTGGAAATGGCATTTCAAAATCTCTGAAAATTCGTACAACCCGAGAAACATTTGTTTAAAATTTTAATTTGAGACTGCTTCTAAAAAATTCTTTTGCTTCTTTTCAAAAAATTTTAGTTAGGTGAGAACTTTAATTAGCTTAAATCTATCCCTTGTTATAGGTTTGCCTTTGAGTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATTTATTACGGACCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATTGAACAGATTTGCTTAACAATTGTGCAGTATGCTGAAATAGGTTCGCGATTATTATGTCTAGAAAGTTTAATAAAGCATTTTATAATACATTATTTTCAACACTATTAAGCCGCT # Right flank : ATCTTTACATTTGCCAAGACTAGATGATGCCGAAGAGTTTCTTTCTCTTGTTTGAGAGGAAGTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTTCTCTTGTTTGAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 6650-6255 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRF01000047.1 Leptospira noguchii strain 56682 Contig047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 6649 36 100.0 36 .................................... TTTTGGAGAATTGCTTTCTCCAGAAGTTCGAACTTA 6577 36 100.0 36 .................................... AGGCGTGGCGACCAGATTGTTCCGATAACGATATTA 6505 36 100.0 34 .................................... CAAATACTTCTTTCATTCTTTGCAGACAATATTG 6435 36 100.0 37 .................................... TATCTTTAGACAAAACCTGGGGTGGAATATTCTATCA 6362 36 97.2 36 .......................G............ CCAACAGGTTATTCAGTGCCAGCGGTGTTAAATAAA 6290 36 97.2 0 ..................................T. | ========== ====== ====== ====== ==================================== ===================================== ================== 6 36 99.1 36 TTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Left flank : ATAAACCATAAATTCGGAAATACACAATCTATTAGAGCTTCTATATTTTTATAATATTCCATCATTTACTTATAATAAGGTCCTGCAAATTTTAGAAACAAATCCAGTTTGGCCAAAATTCTGGACGCTATGGTTTCTGAGTTAATCAAGTCTTCAAGTCCAGCGTCTGGACAATCATCTCAACAAGAATAAAAAGATTTTTGAATGAAATTTAAGTTAAATTTCAAAATCAATCTTTTTAGTCACAGAAACCTAACAATCTGGAATCTAATTTTCTTGACTTTAAAAAGCAGATCATTTTATGATAAAACGCTTTTTGCGAACCTGTTTCTCCCGATCAATGGCGGCCCTTTCGCGCTCCAGCAAGTAACCGCCATTTGTGGATTGGATGGGTTTGCTTAGCATTTATATAGCATGGTAAATTAGGTTCGCGATAATTATGTCTAGAAAAGTTAATAAAGCTTTTTCTAATACATAGATTAGGACCTTTATAGCCGCTA # Right flank : ATTGAAAACATCTTCGAAAAACGTTGAACACGACTTAAGTAGTCCCTGAAAAAGTGTTCAAAAGAATTCCAAACTTAAAAGTTGAGAATTGGTTCTAACTTTTAAAGAGGGCGATTACGCCTAACTTCTGCTTCTCGCTGCGTTCGGAATTGCTAATGCGAGCCCGCACTCCAGGCGTTGCCACATTTGTTTTGTTGTTAGGTGAAAGTAGATTATCGTCTTACTTTAAATCATTAAATTCACAGGTAATAACTCTATGGGAAGTATAAAAAATTGGGCTACTGGCCAATTATCCATTGTTTCTGAATGTTTAAGTTATTATTTTGCCTTTATAGCGGTTTTTAATTTTTTAACTAAAAATTATAGAGACTTGTTTAATTTTGAAGACATATTTTTAACGTGAGCAGGGCGTAACGCGAAAGGGATCGATGCGGGGTCAATAAATTAAATCTAAAGACGATTGTTGTATTATGTTTCCTGTATGCAATTTATTGACCAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 8816-8147 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRF01000006.1 Leptospira noguchii strain 56682 Contig006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 8815 37 100.0 35 ..................................... CTTTATAAATCCCCCACAAACATCTATCCTCTTGC 8743 37 100.0 36 ..................................... AATAATTGCAAGATTCTTAATTTCAATTTGAAGATT 8670 37 100.0 34 ..................................... TCTTTTGGCTAGGGATATATGTATATCGTAACTC 8599 37 100.0 36 ..................................... CGTGAGTGGATCTCGATTTATGCGCCTCACTTTAAA 8526 37 100.0 34 ..................................... CATCATCGCGCCCATAGATACGGCCATCCGTTCT 8455 37 100.0 35 ..................................... TTGACAATCGTAAGAATATTTTTTTGTAAATTGTC 8383 37 94.6 34 .....................A.G............. AACGTAACAGACTCTGAGATCAAACGCTCCGCTT 8312 37 100.0 33 ..................................... ACGGAAAAAAAGAACTGAAATTAAAAACTTTGA 8242 37 86.5 24 .............................GA.C..CT GAGGAAATTCCTCAGTTGATTTTT Deletion [8182] 8181 35 81.1 0 ...C.........G--...........AA.C...... | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 96.2 34 GTTTCTTCTTCTTACTTTAGAGGAAGTGGATTGAAAC # Left flank : GCAAAGAAAAAATATAGTTTTTCGCCTAACATCAGTTAATAAAAAGTAGTAGCTTCTCTATACACTTATAATAACTGCTAAAAACTATATTTCGAATTTTTGTATGTTGTTTCTCAGAATTGATTTGTTAAATCGTAATTTGTGGTAGTTTCTATATTTTTTATATAAAATTTAGTTTTCTATTAAATGTCAAGTTCAACTACAAGATTATTCAAAATCTCTAAATTCATACAATTTTAAAAAAATTTTATATACTCTTTAAATCCTGCTATAAGTTTTCCTTTGAGTAGCCGATCCTTTACAATGAAATGCTTTTTGCGAACCTGTTTCTCCCGATTCTTTGCAGACCTTTCGCGCCCTTGTATTGATTCGTTGTTTGGCGATTTGACAGCTTTGCTTAGCATTTGTTCAGCATGCTAAAAATAGGTTCGCAATTATTATGTCTAGAAAGCCTAATAGAGCTTTTTATAATACATAATTTTCAACCTTATTAAGCCGCT # Right flank : TGAACGCGGATTTATATAACGTGAGTTCAGCGTAAAGAATTCATTTTTCTGAAAAAAGCTGTGATCTTAAACTTTCTGAATCAATTCCTAAAATGTGGGAACTCATACTGTTTAAAAATTTGTAATGTGACTTAATCTGTGGGAACTACCTCAGATCGCGATTTTACAAACAAATTCTAAAATTGTAGGAACTCATACTTTTAGAAAATTTTTCTCAATCAGAACTCACGTTAAAATGAGATTTAAATTTTGATGATGCCGCAAAACAGCGATTTTATGTAAAAATCGGATGGGCGATGGACTCTTTTTGTAATAGTTCCCACAATTTTCAGAGTTTAACTGGTAAATCCACAATTTGCAGTAGTTCCCACAATTTTCAGAGTTTAACTGGTAAATCCACAATTTGCAGTAGTTCCCACAGGTTAAGTCGTATAAAAGAGTTGTTGAAAAATCCATAATGGAAATGGAGATTAGGAATAATACTTCAATTTTCCATTTCA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCTTCTTACTTTAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 26010-26972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRF01000068.1 Leptospira noguchii strain 56682 Contig068, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 26010 37 100.0 34 ..................................... GTTTTCTTGTTCACTTCGATGCCTCTCTTTTGTT 26081 37 100.0 34 ..................................... CATTTCGTTGACGTTGTCGATAGTTTAGTATATA 26152 37 100.0 34 ..................................... CGAAAGACGGCATTAATGATTTTTACAACTACAG 26223 37 100.0 36 ..................................... AGAATAAAGAAAGGCGATGTCCCGCAAGGTCATCTT 26296 37 100.0 34 ..................................... CTCAGTTGAAAAAAAGATTAGGACGAGACGGCAA 26367 37 100.0 36 ..................................... GTGCAAAACATCCAACCCTAACAACGGGTACGGTAT 26440 37 100.0 34 ..................................... TTTATGACAATCCAGTTCTTAGGAATCCGACCAA 26511 37 100.0 33 ..................................... TCAAGTTTGCCTGATAAAAACTTATTTCGGTCT 26581 37 100.0 34 ..................................... TTTTAAATAGTAGTTTTGGAAATTAATTAACCAA 26652 37 100.0 34 ..................................... ATATCGCCTCCTTGTTTTGGTTGCGGCTTAAGAA 26723 37 100.0 35 ..................................... CGGTAGTTTTGTTATATACCGCCTTCGGTTCGTAG 26795 37 100.0 35 ..................................... TTAAATGAGCGCTGACAAAAAAGAATTATCAATTC 26867 37 100.0 31 ..................................... GAAGGCTATAATTTTTCAGATGCTCAGCCTG 26935 37 83.8 0 .....GC....C....C......A...A......... | A [26956] ========== ====== ====== ====== ===================================== ==================================== ================== 14 37 98.8 34 GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Left flank : CGTTCAATTTTCGTAGTAGTTCCCACATTGGACTGTTTCGGAACAAGTTCTTAAAGAATAATAGAGTTGTTGAAAATTTTATAATCTAAATCAAAAAACTTTTTCAATCAACCATTTCCATAGAGCAAAAACCGATGGAAAATTAATTTTCAATAAATCTAATATTTTTAAAATAAACCTAATTTCAAAATTAGCAAAATCCAGAACACAAACGTTTCCTTAATTACGTCTCTTTAGATAGTTATAAATTTATAATTTTCTACTTTTTTAATCTATTATTGACCCCGGAAAGACGATTATTACAATAAAACGTTTTCCGCGAACCTGTTTCTCCCGACAAATCACGAACCTTTCGCACTCTTGTATTGTTTCTTTGTTTGGCGATTGAACTGTTTCGCTTAACGTTTGTTCAGCATAGCAGAAATAGGTTCGCAATTATTATGTCTATAAAGTCTTATAAAGCTTTTGTAATTCATAATTTTGGATCCTATCAAGCCGCT # Right flank : CGATTATTTATATAGTTTCCTTGGATTCAGTCGCATTGTGAAGTTTATAGATTTTTAAATCGCATTCTTACTGTTCAATTAAGTGGTAGTTCCCACAGATTTTGTCGCATTACGGACTTTTAAATATTCATTTTTTGTAATTAGAATTTGTATGTAATAGTTCCCACATTTTATTTTTACGAAAAAATCAGGTTTTATAAAGCAAATCTATTGTTTTGAGTTTTTTTCTGGTTTCATTTTTTACCGGGTTTTTGGATATTTTGCGGTGATTTTACTTTTTATATTTTAATTCTGGGTAGCATTTTATTTGCATTTGCCCCCGTTTTCAGGAACAATTCAACACCAGCACACGTATAATTTAACTTCTTCTTTCAGAAAAGAGTAAAATCATCAAAATCCAATTCGATTTCCTGTTTAAAATTCTCTAAAAGTCTGCCTCAAGCCTAAAATGATCAAAATTTGATCATGGAAGATTTACAAATACCCAGATGTGGTGACGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 15896-15572 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRF01000097.1 Leptospira noguchii strain 56682 Contig097, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 15895 38 100.0 32 ...................................... TTTCGTCTGGACCTGCTTTTGTTAACAAGCTC 15825 38 100.0 35 ...................................... GATTTCGACAAATTCTACAGGCGGGGTTATTAATC 15752 38 100.0 34 ...................................... TACAAAACCTCGTCCGACGGAAGAATCGACGAAA 15680 38 97.4 33 .....................................T TGAAAGAGTATTTTGGTTTTCCGTTCTCATCTT 15609 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== =================================== ================== 5 38 99.5 34 ATTTCTTTCTCTTATTAAAGAGGAAGCGGATTGAAACA # Left flank : AAATCTTTCGTAGAAAGATTACCACATTCCAAAGATAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATTGAGTCCTTTTTTTTAAATCGTATATAGTTAGTTGCCATACAAAATACCTAAACGTATAATAAGAGTTTTATAAAAATGCCATATTTGTGATCAATATAATTTTAAAATAAAACAATCGGTAAAGAACATATTTAGTTGAACAACATTTTTTGTTTATTTTTATAGAAAACCCTCCCCATTGCAAAAATGAAGCGTTCAATATTCTTGACTTTTAAGAGGCGATCATTTTATGTTATAACACTTTTTGCGAACCTGTTTTTCCCGATTGATTGCCGTCGGTTCGCGTTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGCATTTATATAGTATGTCACGTTTAGGTTCGCAATTATTATGTCTATAAAAGCTAATAAAGCTTTTTCTAATGCATAAATTAGTATCTTTGTGGCCGCT # Right flank : ATTGTAATGCTAATCGCATCAGCTCTGCTTTTGATTTCTTTCTCTTATCAAAGAGCGGGTTGAAACGTCAAAAAAACGATTTATTAGAAAGAACTTTATTTTAGATTTTATAAATGCTTTCACTAAAAGTAGGATTTTAGGTAGTATATTATAAAATATAATTATATAACGTAAGTTAGACGCCGATTATTTTTTTGTAAAAAAGTGTGCAAATTGCTATAAACGATTTGAGTTCAAGTTAAAAAATGTAGAAATTAATACATTCTATAAATTGAATATATAAATCTATTGTTAAACTTTACAGTAAAATACAATTATGAGGCGCAGCTTGTGGGAACTTTATGTAAATTTTAATTTACTGTAAAGTTTTCAAAAATGTAGATTTGTTCTAAATCAAGTAAGTTGTGTTTTATCATATTTCCTGAATTGGAGATAACGTATTTTTGTAAATATAACGACAAACCTTGAATGATTCGATAAAATAGAAATCGCTTAGAAAC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGCGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //