Array 1 116543-117485 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV801752.1 Corynebacterium sp. HMSC077B05 Scaffold149, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116543 29 96.6 32 ............................T TAAGCAGCGTGCTCCTTCCGGGGTCATTGTTT 116604 29 100.0 32 ............................. CACCCCGGAGCCCGTCGACGAAGCACCGAGCG 116665 29 100.0 32 ............................. CGAATTACGTGAGCTGGGATTACCACTGGAAA 116726 29 96.6 32 ............................G TCGCCGCCGGTGCTGTCGCGCTGGGCGGCGTC 116787 29 100.0 32 ............................. GCACGGGCGATTAAGGCGCTGGGGCGGGCGGA 116848 29 100.0 32 ............................. TCGCCAAGGTCTTTACCGGCCTTATCGCCCAG 116909 29 100.0 31 ............................. CCCCATCATTCAGGAGAACATCATGGTAAGC 116969 29 96.6 32 ............................G GGTGAGGGTGGGTGTTTCGTAGCCGGGCATGG 117030 29 100.0 32 ............................. GACCGCCGTGTCGTCCGGTGCTGCCGTGGCCG 117091 29 100.0 32 ............................. TCATCGTCGACACGAACCCCGTGGGCTTATAT 117152 29 100.0 32 ............................. ACCACCAACCTGACCGGTGGCCAGTCGTCTAC 117213 29 100.0 32 ............................. CCCGGCACCTGGCGCGCAATCACAACCCTCAA 117274 29 100.0 32 ............................. ACCCCATCCGTCTGCATTCGACAGCTGTAGAG 117335 29 100.0 32 ............................. TTCACCCTGCGGGGTGAGAACAATCGGGTGGA 117396 29 96.6 32 ............................T GGATTTGGGTCTGTGCTCCATTCGGTGACTTG 117457 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.2 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : GATGCTGACCTCTTCTTATGGAGCGAGCTCGAAACAGTTGCAGCAGGAGTGAATTGGGATTCGAAAGAGGCTAGCTGGGCATGATGGTATTGGTCATTACCGCCTGTCCTGCTGGCTTGCGCGGCGACTTAACGAAATGGGTTATGGAAATTTCCCCTGGAGTTTTTGTTGGTCAGCCAACGGCGAGAATTCGTGATATCTTATGGGATCGCACTGTTGAATTGTGTAAAGACGGTCGAGCTTTGCTTGTTTATTCGACGGACAGTGAACAGGGAATGGAGTTTAAAACTCATCGGCATGATTGGGTGCCGACAGATTTTGATGGCTTGTCTTTGATGATTCGTCCTGCGTCCGCGGGAAAACGAGATCGCTTTGGAAACGGTAGACGTAGTGAGTGGGCTAAAGCTCGTTTTAAGAAGCAACGCCGCTGAGGTGGAAGCTTCTCGACGGAGTTGGATCTAGAATAGGCCGTGCACTGCTGTTGTTGCTGGTTGCGAAGA # Right flank : CGGCGGGTAAATTCGCCCCGCAGCCCTCAGCGCGTGCTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCGCGTGCTCCCCGCGTGAGCGGGGATGAGCCCTACTCCACCCACGCTGAAGCCCTGGCCTACGCGTGCTCCCCGCGTGAGCGGGGATGAGCCACAATGTGGCCCCTCAAGGAGAACCAATGACTGGTGCTCCCCGCGTGAGCGGGGATGAGCCCTCGCCGCGATAATAACCCGGCCTAGAGGTTCGGTGCTCCCCGCGTGAGCGGGGATGAGCCCGGAACCAGAACCGGAATAGTCCGGCACGAGCAGTGCTCCCCGCGTGAGCGGGGATGAGCCCAACCGGTTTATTGAATCGTCAAAGAAACTACCGTGCTCCCCGCGTGAGCGGGGATGAGCCCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 117650-121461 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV801752.1 Corynebacterium sp. HMSC077B05 Scaffold149, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 117650 29 100.0 32 ............................. TACTCCACCCACGCTGAAGCCCTGGCCTACGC 117711 29 96.6 32 ............................A CAATGTGGCCCCTCAAGGAGAACCAATGACTG 117772 29 100.0 32 ............................. TCGCCGCGATAATAACCCGGCCTAGAGGTTCG 117833 29 100.0 32 ............................. GGAACCAGAACCGGAATAGTCCGGCACGAGCA 117894 29 100.0 32 ............................. AACCGGTTTATTGAATCGTCAAAGAAACTACC 117955 29 100.0 32 ............................. AGGGGTGAGCAGCAATAGTTAAGTTCCGTATC 118016 29 96.6 32 ............................A TGAACCAGCAAACCCCACAGGCAAAGACATAG 118077 29 96.6 32 ............................G AGTTGAGCGCCCTCATCACGCACCGCGACGAG 118138 29 96.6 32 ............................A AGACGCTGGAAGAGGGCGCGCATCTCGTCGCC 118199 29 100.0 32 ............................. CCGCCCTGCTGCTCCTGGGGGCCGTCGTTGTT 118260 29 100.0 32 ............................. TTTTTGCGCCCTACTCAATCCCGGCACGCCTG 118321 29 96.6 32 ............................G TCGGGCATGGATGCCACGAGCTCGGGCTCATA 118382 29 100.0 32 ............................. GCTGACGGAGCAACTCAGAGTGTGCATAAATA 118443 29 100.0 32 ............................. GCCGATGGCGTGCGCCGGTTCTCTATCAATGA 118504 29 100.0 32 ............................. GCCAGGGCAAGCGGGCGGAGGTCTTGAGTAGG 118565 29 96.6 32 ............................G TTTGTGCAGGTGCAGGAGGGAACGGCCCCCGA 118626 29 100.0 32 ............................. TTATAAGACACCGCGTGAGCTTGCGCAAATTG 118687 29 100.0 32 ............................. TCAATAGTGAATTGTCCCCGCGATGATACATG 118748 29 100.0 32 ............................. ATGACCGCGCAGTTGGCGGCTAACGGTGTCAA 118809 29 100.0 32 ............................. CAAAGGCGGCGGGGTACGCCCCGTAGCAAGCG 118870 29 96.6 32 ............................G GAGGAACCTATGACCACCATCTTCGGCGTTGA 118931 29 96.6 32 ............................T GAGGGAGGTGGTTATGGCTCTCATCGTTGTGA 118992 29 96.6 32 ............................G TCTGCTTTAGTGGCGAGTTCTACCGGGTCAAG 119053 29 100.0 32 ............................. TCATGGTGGGGTGCGCATACCTATCACGCACG 119114 29 100.0 32 ............................. ATGCGCCAAGTGCGGCAAAACCCAACTACGAA 119175 29 100.0 32 ............................. CGTGTTGCGTTGTATCGCGAATTCCTTACCAG 119236 29 96.6 32 ............................G TAATGACCCATCGAATCTCGAAGGGCTCGAAG 119297 29 100.0 32 ............................. CGCTCCGGTGTGGCCCTCGACCTGCGCCCCAC 119358 29 96.6 32 ............................G GAGCTTGTCTTCGGGAACTTCCTTGATGTGGG 119419 29 96.6 32 ............................G TCTGCGATGCCGGTTGAAACGTCTCCGAGTTC 119480 29 100.0 32 ............................. ATTTTGTGGGGCTTGAGTTTCCTGACGAATAG 119541 29 100.0 32 ............................. TCGATTTTTTGGCCTGCACGCCCCGGGGTGTA 119602 29 100.0 32 ............................. CCCTTGGGGACTGGCATAGTTGTCATGCGTGC 119663 29 96.6 32 ............................G TCACCACCGATGATGTGGAGAAAGCCGCGACG 119724 29 100.0 32 ............................. GACTGTGGCCTTGGTAGCTGCAGCGGCTTCGT 119785 29 100.0 32 ............................. TAGTTGACGCTTGATCTCCTCCAGCGCGGCGA 119846 29 96.6 32 ............................G ACTGCACCGCTTCGCTGGCACCGTCGAGCTCC 119907 29 100.0 32 ............................. CTGGGCGGGTTGCTTACGACCATTACGCCCCA 119968 29 100.0 32 ............................. GGCGTAAGCGTTGACACGGTACAGGTTCAGAT 120029 29 100.0 33 ............................. GAGTGGATGGATCGCGAGGACGCGGCTAACGCC 120091 29 100.0 32 ............................. ATCGGTGCTCGATCAGGCCCGCGACATGCACG 120152 29 100.0 32 ............................. TAATCCCCAACAGTTGCGTAATTACGGCAATG 120213 29 100.0 32 ............................. ATCGTGTGAGCTAGCAGGCTCACCTTGGGTTC 120274 29 100.0 32 ............................. CACGGGCGGCACGGGCTCCCCCGCGCGGATCG 120335 29 96.6 32 ............................T ACACCGTGCGGGGTGGCAATGAGCCAGATCGA 120396 29 96.6 32 ............................G GCGATTTCATGCCTAGGCCATACCGCCGCGCG 120457 29 96.6 32 ............................G AAGCTGCTTCGCGAGAACACCGCAGACTGGGT 120518 29 100.0 32 ............................. GTACCGGGTTGAACCGCCAGCAAGGCCCAGTA 120579 29 96.6 32 ............................G AAAGCCGCCGACGCCGCGAACTCATTAGCGAA 120640 29 96.6 32 ............................G GTCGAGCTGGGAGAAGTCGAGTACGGTCTCGA 120701 29 96.6 32 ............................T TCCCATCGTGAGAACAGCACCAAACATGACTA 120762 29 96.6 32 ............................T CTCAGTGAGACGTGAGACTTCAGTAAGTGCAC 120823 29 96.6 32 ............................G GGATACCGCCGCTTCGAGCGATCATGCGCCAA 120884 29 100.0 32 ............................. CCCACTCTCACCCTTGACCAAATCCGTGAGCT 120945 29 100.0 32 ............................. GTGGCGAGGACGATAGCGAGCATGAGGACGAA 121006 29 96.6 32 ............................G GCGTTATACGGTGCTAGGGGTAAGTGAGCTTA 121067 29 96.6 32 ............................G TGGCCAGGAAAGTACCGCGCGAGGCTATAACC 121128 29 100.0 32 ............................. CATGCCCCGGACGGTCGCCCGTGAGCTGCGGC 121189 29 100.0 32 ............................. ACTGTTAGCTGCTCGAACGTGAGGTAGTTGTG 121250 29 100.0 32 ............................. CGCTCAACTTATCGGCGTCTCAAAATCAGCGC 121311 29 100.0 32 ............................. GTAGCCGGATCGCCCTCAGCGGAACGCTCACT 121372 29 96.6 32 ............................T GCGCCCACCGGCTGCTTCCACTCCGGGACCGC 121433 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 63 29 98.7 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : ATGTGCTCCCCGCGTGAGCGGGGATGAGCCCACCACCAACCTGACCGGTGGCCAGTCGTCTACGTGCTCCCCGCGTGAGCGGGGATGAGCCCCCCGGCACCTGGCGCGCAATCACAACCCTCAAGTGCTCCCCGCGTGAGCGGGGATGAGCCCACCCCATCCGTCTGCATTCGACAGCTGTAGAGGTGCTCCCCGCGTGAGCGGGGATGAGCCCTTCACCCTGCGGGGTGAGAACAATCGGGTGGAGTGCTCCCCGCGTGAGCGGGGATGAGCCTGGATTTGGGTCTGTGCTCCATTCGGTGACTTGGTGCTCCCCGCGTGAGCGGGGATGAGCCCGGCGGGTAAATTCGCCCCGCAGCCCTCAGCGCGTGCTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCGC # Right flank : CCTTGCCAACCGCCTTATGAAAAGAAACCTTGGGAACTTCCCACATGCGCGGCGATAATGGTGCTCCGCCTACAGCGCCGCCAACGCCTCGCCCACGCGCTTGCCGGAGTGGATGCAGCCGCCCAGGAACGTGCCTTCCAGCGCGTTCTTGCCGTGCATGCCACCACCGCCGAAGCCGGCGGCCTCACCGCAGGCGTAGAGCCCCTCGAGCACGGTGCCGTCAGCGTGGAGGCAGCGGCCGGAAAGGTCGGTTTCGATGCCGCCCAGCGTCTTGCGGGTGAGCACCTTGAGGCGCACGGCGATAAGTGGGCCCTTGGATTCGTCGAGCAGCCGGTGCGGTGGGGCGGTGCGCACAATCTTATCGCCCAAGAATGCGCGCGCGATGCGGATGTAGTTGACCTGCGCGTCTTTGCTAAACGGGTTGTCCAGCTGCGAGTCGCGGTCTTCGATGAGGGTGCGCAGGGAGTCGAGTTCAATGCGCTCGTTGCCAGCGACCTTGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //