Array 1 1822-513 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUCZ010000089.1 Nocardia sp. alder85J NODE_89_length_12420_cov_45.886521, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 1821 28 100.0 33 ............................ CCGCCGCCCCTGGAGATCGGCCTCCCAGGATCG 1760 28 100.0 33 ............................ CATCTGCGCGGCGGCCGGATCCCACTCGGCCCG 1699 28 100.0 30 ............................ CCTTCTCGTTTCGGGCCCGTGGATGAGGCG 1641 28 100.0 33 ............................ CCCCAACTCCCCGCACCGGGGCGCCGGACAGCT 1580 28 100.0 33 ............................ CGGGTCCGGTGCCACGATCGGCGGCAACCCGGG 1519 28 100.0 33 ............................ CGATTGCCTTACCTGCCGCCGAGGCGGCCGGTG 1458 28 100.0 33 ............................ CCCCCTCCCGCTGGGAGGGGGACTGGGGGTAGG 1397 28 100.0 33 ............................ CGCCTCGCCCGGCGCGAAGATCGGCGAACGGGC 1336 28 100.0 33 ............................ CGTCCAGGTGCGGTCGGCGATCACTCCGTCGCA 1275 28 100.0 33 ............................ CGTGCCCGCCGCGCTGGCTGCGGCGGCCCTGGA 1214 28 100.0 33 ............................ CTCTTCCCACAGCACCACCGGCACCGGAACCGT 1153 28 100.0 33 ............................ CCCCGAAACGCAACGCCGTAAGCCCGGCGACAA 1092 28 100.0 33 ............................ CTCGCGGCACACCGCGAAAGGCTCGCATCCGAG 1031 28 100.0 33 ............................ CATGTACCGGCTCAACCTGGCCAAGCTGCAACA 970 28 100.0 33 ............................ CGCCCGCACCCAGGACGTCGAATACCTTCTCGG 909 28 100.0 33 ............................ CTGTACGAAGCGTTCGCCGACGCGGGCCTGATC 848 28 100.0 33 ............................ CTCGGCGACGGGCCCGCGGTGGCCGACCCCGCC 787 28 100.0 33 ............................ CTCTCTCAGATCCATGTGTCGTGTGCCCTCTGC 726 28 100.0 33 ............................ CCACAACAGGTAACTGCCCTCGACTATGGTCAC 665 28 92.9 33 ......G......T.............. CCGCTGCTCAAACTCGGCGGCCAGCTGCTCGGC 604 28 100.0 36 ............................ ACAGGTCCTGCACCGCCCGCAGAAACGGTGTGTCGC 540 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ==================================== ================== 22 28 99.7 33 CCGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : GGACGCCGACATCGTCGAACTATGGGACCGATCCGGCAACGTCACCGCCGGAATCTCCTACGACGACGAGGAAGTCCCGTGGTAGTACTCGTCCTCACCGCCTGCCCAGCCGGCCTGCGCGGCCACCTCACCCGCTGGTTCCTAGAGATCAGCCCCGGAGTGTTCGTCGGCGTGCCGACCGCCCGCGTCCGAGACCTCGCCTGGCAGCGAGTAGTCGAACTCGCCAAAGACGGCCGCGCCATCATGATCTACTCCACCCGCACCGAACAACGCCTCGCATTCAAAGTCCACCGCCACGACTGGGAACCCGTCGACATCGACGGCATCCACCTCATGCGCCGACCTCACACCGGCAACACCAGCACCACCGTCAAACCCCGACCAGGCTGGAGCAAAGCCAGCAGATACCGCAAAGCAACCCAACGCCGCACCGCCCACAACGGCGACGAAAAGTGAAAGAGAAACACGGTTACCGCACAGGAACCCCCTGGTCAGGAAGT # Right flank : CTGCGCCGGGCGGCATGGGTCGCCACCAGCACACGCTCCATTAGGTCCCGCCACTCGACCGCTGGACTCGTCCCGGCGGTACTGCGCCCTAACACCCCCTGCTGGTGCGACAACATCCTGCCAACTCCTGTCGGCGCATCGGCTGTACGGCGGGTCCGATGTTCTCGATAGCAGGTTTGCCGGAATCTCGGAGTCGTCCTCGTGGGACCTGATCGGCACCGCATCGCCGAACGCACTGTGATGCCGCATACCGGTGAACAACTCACGCCTGCATCCTGCGCTGACCCGAGGGAGGCGGATATCAGCGAATCGGTGGACGCGTACCTACTGGTTTGATCCGAAGTGCGGGGCCATCTACCGTCAGACGGTTCGGATTGATTAGCGTTAGCACGACAGTTGTATTTCGTTGTTTTGTAATCGTTTCTGTTGGTGGCGGAGTTGTCGGGCGTGTGCTTGGTGGCGGCGGCGCCAGTGGCAGGTGGCGAGTGCGTGGGTGAGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11766-12281 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUCZ010000089.1 Nocardia sp. alder85J NODE_89_length_12420_cov_45.886521, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11766 28 100.0 33 ............................ CGGGCAATGCCGCCGTGCGTGGCCGGGTTGCCA 11827 28 100.0 33 ............................ CTACTGGCTGGCGTCGCGCTGGCGCTCGAGGAA 11888 28 100.0 33 ............................ CATGGATTTCATCCCACGCGGCCTCAACCGCCC 11949 28 100.0 33 ............................ CGAGGCCGCGGGTGCGATCTTGGCTACCGGGTC 12010 28 100.0 33 ............................ CTCACGCAGCACGATCAGAGACCGGGTACCGTC 12071 28 100.0 33 ............................ CTCCAGCTCGACGCGCACCGGTCCGGCCAGCAC 12132 28 100.0 33 ............................ CGGATCTTCGCCGTCGTGGGCCTGGTAGTGATT 12193 28 100.0 33 ............................ GTACGTGTGGCTCACGCAGGGCCCCGACGGGGT 12254 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 33 GTGCTCCCCGCACGCGCGGGGATGAGCC # Left flank : CGTTGTAAACGCAAGCTTACGTCTCCAAGGTTGGCAATCAAAATGTAGTCGGTCAGCCGCGAGGGGAGGCACTGTTCGATAGGGGCAACCGGTCTCGTGTGGTTCATGGTGCCGGCCAAGCGGCGATGGCCGCGAGGATGGCCTTCGTTGCATGAAGGCCACCGACTCGGGTTCTGGAACCGGCGATCCCCGCAGGCGCGGGGAAGGTACTGCACAGCCCAGGTTTCGACGTCACCAAGGGGCTCATCCCTGCACGCGCGGGGAATGCGAACAGACTACCGAGCGTCCTGATACAGGGACCTGCTGGCCAGTGCTGCCGCGGCACAACGGATCACGGATATCGTTGCGACGAGGTCGGTTGTAGGCAGGGCCAAGTCGGGGTCGTGGTTTGCGAGCTACCCTGATGTCTACGGTGACATCGACACGTGTCAAGATCGACTTGGGTCGATCGAAAGTGAATGAAAAACCGGCTTGGGCGCCAAGAACCGCGAGGCCAATAA # Right flank : CATTCCCACCGGTGTCAACGGCCAGCGTGATGTCGCCGCTGGTGGCCGACCGAAGTCTCCACCGCTTCGCCCTGGAATGATCAGTTCACCGGTCACCTCCTCCCTGTCGTGCGGTGCCGCATCCGGTAGGAATCACCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 157-732 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUCZ010000161.1 Nocardia sp. alder85J NODE_161_length_1050_cov_27.877573, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 157 28 100.0 33 ............................ CACTTCCCGAACCGGGAGATCAACCACGTCAGT 218 28 100.0 33 ............................ CCGGTTGAACTGCCGACGACCGATCGGCCACGA 279 28 100.0 33 ............................ CCGATCCACCTGCACTGCAAGTGCGGTGTGGTG 340 28 100.0 33 ............................ CCGCGAAGGTGGTGGAAGACCGTTCTGTGTCAG 401 28 89.3 33 .......................TC.G. CACCTGCGCACCCGCAATTTTCAGGGTTTCCGG 462 28 100.0 33 ............................ CTACACAAAGAATACCCACTTCATATCAAGGTG 523 27 96.4 33 ....................-....... CTTAGGGTTTGGACCTGATCCGGAGGGGGTAAC 583 28 100.0 33 ............................ CACGCTGACGATCATTTTGATGCGAGGCTCACT 644 28 100.0 33 ............................ CGCACCGGTGATCGCCAGACCGGCGGTGTTCAT 705 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.6 33 GTGCTCCCCGCACGCGCGGGGATGAGCC # Left flank : ACCGTCCACCGCCCCGGGCCTGGTTCCGGGGTTGACACGAGGAGCGAAGTGGCGGGGACTTCTACTTGGCCGCCCGCGGCGACCTACACACGGCCACCAGCGGGGACTTTAGGATGGCCACGGACATCCCACCGGAGAAACCTATTCCCTCGGTGTG # Right flank : CTGCGCAGCGCCAATGTCGCTTCCGCCTGAAGACTGGCCGGGGTGGATGCTCGCGGTGACGTCGGCGATATCGGGCAGGTCCTGGTTCCCGGATTCCGCGGTGGCGGCGGTCAGGGCGGCTCGGTGTCGGGCCACGGTGCGTTCGACCGCGTCGCCGAGGTTGTTGAACAGTTGGTGATCGAAGCGGATTACCAGCTGTAGGTGGTCGACTGGGACGCTCGACCGGGAGTGCCTGGACCCCGAACTCACTCTTGTGGGTTCGGGGTTTCCCTGTGTCGGGCGAGTAGCTCGCGTTGCTGGATTGTCGCGACCGGTGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //