Array 1 118294-118108 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073250.1 Cylindrospermopsis raciborskii N8 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================ ================== 118293 32 100.0 42 ................................ AATTGGTTGACAACCAAAAAAAGGTGTGTTATGGTAGTGTCC 118219 32 96.9 48 ........T....................... TAGAAACCCCCCAGCCACAAACACATCCGCATTAGACTTAAATAGTCT 118139 32 93.8 0 ........................G...T... | ========== ====== ====== ====== ================================ ================================================ ================== 3 32 96.9 46 TGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Left flank : GCAAATTTATAAGGTATGAGGGATAAACTTCCATTAATATATTTATCTCCCAAATTAAAAACTATTGCTCCTGTGCTTTTCAAAACTCTTACACATTCTTGAAAAACAGTTAGTATATTGTTTAAATATTCTGCTTCTGTGGATTCATTACCGATTTCTAAATCACCATTGCCATAATTACGCTGCTGAAAATATGGAGGTGAGGTAATAATTAAATCAAAAGTATCATTTTCTATTTGTTTAAGAACAGATAAGTTATCACCAAAGATAATTTTATTTTTAAAGTGTGATATTTCTTGTAATGGCATATTTATAAGCATAAAATTGGAATTAAACATGAACGTAACTGGTTAAATATAATATTAACCTGGTAATAAAAACTTTGTCTTCTGTCTATAGGAATAGTTACATCTATCTTTAGACAGAAAAATCAGTAATTAACGAAGAAAGTGCGAAGGTCAACAAAAAACGGTTGGCACTTCTTCTGCTGTACGTAAGCT # Right flank : GTAATAAGGTTGTTTCCAACAACCTTATTACGTGACGTTCATCAGGGTGCAAAGACGCCTGAAATTGTCTACCCAGAAAGTGACGGTCAACCGATGGCGGACAATACTAGACAATTTACATGGATTGTCAAAGTCAACCGCCCCACCCACAAGGGGATGGGGTTTTGCGCTCGATCAATAAATTATTACCTGCACGACAGCTTACCCTTGGGGGTCTTAAGCTGGGTTCAATTTTTTACCAGATGATAACTCATTCTTAACCTTTTAATTATTAATCTTTGCTATTGTAGTCAGATATTGTCAAACAATATGTTACGGCTTTAGCCAAAGGGTGATAGGCTCTTAAAATTGCCTTTAAACCATATAGCTAAAGCTTGTAGAGCTTAATAACTGATTATAAAGTCTAACAATTATTAAGATGTCACTATTTAACATTGCAGTAACTAACCTTTACTAATAACCCCTTCTGGCATTTCTGGCAATGAACCCTACTGAAAATA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 348616-345385 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073250.1 Cylindrospermopsis raciborskii N8 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 348615 36 100.0 36 .................................... TTCATATAACTCATTGATATTCTTTAGTCTTCTTTG 348543 36 100.0 36 .................................... GGTAGTCGTATGGTAGGTACTCCGCCTCTTCCCACC 348471 36 100.0 35 .................................... CCCTTCACTTAAACAGTATACTGGCTGCTCATACA 348400 36 100.0 40 .................................... TTTTGTTCTTTTGTACATACCTACTAGGAGGTGATGATTT 348324 36 100.0 39 .................................... TGCAAAAACCGAGGTCAACAACACAACTCCGGTTGTTGA 348249 36 100.0 39 .................................... CAAAACCCAAACCCATGGGGGTTTTGGGAGGTCTTACTC 348174 36 100.0 38 .................................... TGAAGAAGCTATTAAGAATGAAAATCCCATTTTATTCC 348100 36 100.0 37 .................................... ATGAGCTAGAGATTGCTCTGGCTCTCTCCGACTACGA 348027 36 100.0 36 .................................... GACCACTTGCCCCCTCCAAGTGGGGTTAGAGTTATT 347955 36 100.0 44 .................................... TAAAAAAGTCCATTTATAAAGACTCTTACGATCAATTCTATGGG 347875 36 100.0 39 .................................... CATCCAGATCGGCTGGGTGCCCATCAACGGGTGGGAACA 347800 36 100.0 35 .................................... GAGTATATTGAGCGTTCACCCGATTGGGTGGATGT 347729 36 100.0 37 .................................... TGGAAGAACTCGATAAACTCCTCTTTTCCTAAAAGAA 347656 36 100.0 38 .................................... CGTCTGCGAAATCGGCAGTCGTAGGGATTATGCCCTTC 347582 36 100.0 36 .................................... GCAGGAGGAGGAGATGCTATATCTTGCTCGTTCTCT 347510 36 100.0 37 .................................... TTCTCCCGCTCCCATTGAGGAGGAGGATCTCTGGTAC 347437 36 100.0 38 .................................... GGGGAATGGACACATAACTTGCTCCCCACTTTTGGGTG 347363 36 100.0 43 .................................... CTAGATTTTAAAGTACAGGCTCTTAATGATCTCAATAAAGCCG 347284 36 100.0 42 .................................... TCTACCAATTCTGGTAGAAGAATGGTGGGTTGACTTCTTTGA 347206 36 100.0 36 .................................... AATCCCACTCCCATATAGATGGGAAGACCACTATGA 347134 36 100.0 37 .................................... CAGGGTAGAATTTCTAACCCCGTGTAATATCTACAAT 347061 36 100.0 37 .................................... CTTCTTGGGAAAAAGGTCGAAGCCGTAAGGCTTCTTT 346988 36 100.0 44 .................................... AACCACCTTGGGTGGTTGAACCACCTTGGGTGGTTCCTCCTTGA 346908 36 100.0 39 .................................... CAATTTGAAGACTTTGAACAACTAAGTGACATACACTTA 346833 36 100.0 40 .................................... TTTTGATTTGGAAGTCCATAATGCCTCCTTGGGCTAAAAC 346757 36 100.0 37 .................................... TTGACTTCGAATACTTCGAACAATTTGAAGACTTTGA 346684 36 100.0 38 .................................... TTTTTTTGTCTCAGGTTGTCAGCTTCATTTGGCGATAA 346610 36 100.0 40 .................................... ACGGTAAGTCCTATTTCTTTGATCAATCTAATCCTGCTAT 346534 36 100.0 36 .................................... CCGTGCATAGTAGAGGCCCAACCTAAGTCAATAGGA 346462 36 100.0 38 .................................... TAAAAAAACTAGTCAAGTATGGAAAACTTTGCATATAA 346388 36 100.0 36 .................................... TTTAAAAAATCTTTCTCAAACCACTTGACAAACTAA 346316 36 100.0 42 .................................... CTACTTAGGGTTTAAAAATCAGTCTTCATCGTCGAAGACGTT 346238 36 100.0 39 .................................... GGAAGATCTAAAGGAATTTGCTAACCAGTGGGTTAGCCA 346163 36 100.0 36 .................................... AAGATATTACTGATATTACTGCTCTGTTTAGGATAG 346091 36 100.0 37 .................................... GTCTTCTAAACATAATTTGTCTACAAGGCTATGGTCA 346018 36 100.0 36 .................................... GTACTGACCCTTTTACTCAACTACAGCCGTACCTCT 345946 36 100.0 41 .................................... GAACTCGCTGACGCACAATACCCATTTTTAAAAGGGGCAGT 345869 36 100.0 37 .................................... AAACCTAAATTAAAAGCTAAGCCTTCAGTAGGCTTAG 345796 36 100.0 39 .................................... GCTGATTTGGAGGTCCTTCTTGACGTTGATCTTTATGAA 345721 36 100.0 40 .................................... CTCTTCTTCCTCCGCTCCTTCTTCTGCTTCTTCTTCTTCC 345645 36 100.0 38 .................................... CAGTAGATTATGCGAACAGACTCTGTGTACCCTCCCTC 345571 36 100.0 38 .................................... TAAAGATTCTAGTTCTGGATAATTAGAACTATTTCTTC 345497 36 100.0 41 .................................... TCAAATGCTTTTTTGGTTTAACAGTCTTCTAGACTCTTAAA 345420 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 44 36 100.0 38 GTCGCAATACCTATTCCTTCTTATGAAGGTCAAGAC # Left flank : CAGCATTAATTTGTTTTGTTCCATAGGTATCCGCCCACCCATCTAAATACAGAGCTGGTAAGTTCCAACTACCTGTTAAATCTCCTGCTAAATTAGGTGTATCCGGAGTTATTGCTGTTAAGATATTCAACAATTTTTCTACGGATTTGGTTTTAGCTACTTTGTCATTCCGAGAAATAATAAAATGTCCACATAATAAATGGGGAACACCATATATATCACCATTGACTGTGACTCCTTGTAAACCTGCAGGATACCAATCTTTGATATTTTCAGGTTTATTCCATGTTTTGACTACATTTGCTTTGACTAAATCACCTAATAATAATGTATCTACTTCAACGAGATCATAACCATCTTGTTTGCTAGGGTTGGTTAACCATTGTTTTAAAGTGTCTATGTCATAAAATCCTTCTTCTTCTGGGTTGAGAGGTTTTAATACTAAGTCAATGTTGGGATTTTGGGTTTCAAACTCACTTTCAATTCTGTATCCCTCAGTT # Right flank : CCCTCCATTTTAACACCTTACCCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTGTTTTTCACCCCCACTACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCAACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCACTTTCTTCGTTAATTACTGATTTTTCTGTCTTTATTTTTATCATTATCCTTTGCTATTACTGAAATATTTATACCGATTTTTCCCCATTTGTGCCACTATTATAACACATTTACAGGAAAATAATTCCCTAAAACTTATGTATATTTTATTTTTTTGAGACCACTTCATTCTCACCCCCTATTAGGTACTACATTGACTGGGATATTTCATTACTCGCATAAAAGTTTTTAGGTTAGATAAAATGTCGTAAAATACCTACCCAAATCCCTATCTTACCCAAATATCTATCTAAAGATAGATGTAACTATTCCCATAGATAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATACCTATTCCTTCTTATGAAGGTCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 567557-568984 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073250.1 Cylindrospermopsis raciborskii N8 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 567557 36 100.0 36 .................................... AGGTAATCCTCGCCTGTGTAAAAACGACAGTCAAAA 567629 36 100.0 35 .................................... CTTTAAATATAGTATCCCACTCAGATACTACATAA 567700 36 100.0 39 .................................... TTTCAGACTTTAAATACCATGCAGGTATTCAAAGTCCGC 567775 36 100.0 38 .................................... AGCATAATGCGTGTTACTCAGTAACATGAGACTCTACT 567849 36 100.0 39 .................................... TGAACCTATAGCTGAACCTATAGCTGAACCTATAGCTGA 567924 36 100.0 36 .................................... ATAGTACCATCGAGGTACTCCCAGATAAAGGGTTTG 567996 36 100.0 35 .................................... TTAAAAGTGTTTACTTGTGTAGTCTATAAATAAGA 568067 36 100.0 40 .................................... GCGAAGAAAAATTCAAGAGTGAAGTTTTTGTTCCTTTGAG 568143 36 100.0 38 .................................... GCTACTACGTCGTCTACGCGGGCCTTGTAGACGTGAAA 568217 36 100.0 36 .................................... GATAGAAAATGGTCTCTGCCCCGTCGTACTCTTCAA 568289 36 100.0 33 .................................... CTTCATCGTCGAAGACGTTATCGACCCAGGGGG 568358 36 100.0 39 .................................... TTCTCCCCTTCTTTACATTCGCTAACCCATTGGTTAGCA 568433 36 100.0 40 .................................... AAACTATACGGAGATAGATGAAGAGGAGATAGGAGAAATA 568509 36 100.0 35 .................................... TCCTTAATAAAGCTACTGACTGCGGCATTTTAATC 568580 36 100.0 37 .................................... TCTCTGCATCTGGCCAGATGGTAATCTGGTTTAGAGA 568653 36 100.0 38 .................................... TACCTGTTACCAGGTATCTCCTCCACTAATAAGCTTGC 568727 36 100.0 39 .................................... ACAGTAAAGACTTATTCCCGGTGCAATTCGAGATGGATA 568802 36 100.0 36 .................................... TTTTGTACTTTATGGAGTAACATCCATGTCTTGTTT 568874 36 100.0 39 .................................... ATCCTGCAGCTGTTGTACTTCCTCATAAGACACAACTAA 568949 36 97.2 0 ..............................A..... | ========== ====== ====== ====== ==================================== ======================================== ================== 20 36 99.9 37 CCCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Left flank : TAGATTTTATCCTTTATCTAAACATACCATTCCTCAAATAGAAGCTTGGGGAGTGGGAGTACCCATAGTGCAATTACCCAATTCTATTATTATCTGAGTATTCATGCTAGGTAAAGTTTTAATCTATATGATATCTGTTTACTTTAGTCTAAGCAAAAATAAAATATACAATAAATTTTTTGTTTTTGAATACCAGTTATTTGAGCATGAATCAGTTATAATAGAATAAATGGAAGGATTAATTAAGGATTAGTATTGAGATTATTGATTAATGGTTAAAGTGATATTAAAGACAATAAATTCAGTGATTAACGAAGGGAATGCGAAGGTCAGGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTGGTAGGGGTGAAAAACAGAGAAAATTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGCTTAAAATGGAGGT # Right flank : CGCATTGTCTTTAGGTAATTATTGCCACGAGCAATAAAAAGCATCTTTCTATTTTTATTGATGCTAGGGAATGGGGAGAAATTTAAAATATGAGAGCGATCGCCTACAATAAGCTATAAGATCGCACCTCCTCAACTCCCCAAACAGCGATTATTCATTTTTATTAAACTGGTACGTCTGACTCCTTCTGCGCTAAAATATCCTTAGTTCAAGGAATTGGCTATGAAAATAAAAGCAATTATTTGGGAAGAAGACGGTGTATGGTGTGGTTCTGTACCAGCTTTACCAGGATGTCATACCTGGGGTGAAAGTTACGAACATTTATTAGAAATGTTGAAAGATGCTGTTCAAGGTTGGTTAGAAGTTGCTAGTCAGCAAGAAGAAGTTGAACCACAAAAACAGTTAATTGAGTTATCTTTATGAAATCCGTTTCTGGTAAGTCTCTGTGTAAGATTGTTGAACGCTATGGATGGAATCTAAAAAGGATTACAGGTAGTCAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 4 1348026-1349240 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073250.1 Cylindrospermopsis raciborskii N8 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1348026 36 100.0 38 .................................... TTGAGTGATATTTGTGTCTACAGATTTTATGTATTCTA 1348100 36 100.0 36 .................................... CCCCCCGGTTACCTTACCCCCGGTTACCCCCCGGTT 1348172 36 100.0 41 .................................... CCAAAATGCCTTGGAGAAACTAAAAAACCATTTTGTATTAA 1348249 36 100.0 37 .................................... AAAAGAGCGACCGTCTGAGCAATCAAGCAATCCTTTA 1348322 36 100.0 37 .................................... GAACGGATTATGATGTCCGGCTCCCTCCCTTCCGTTG 1348395 36 100.0 37 .................................... AACTATGGGTACAGAGGTGCTACCGCACCACCCAAGA 1348468 36 100.0 37 .................................... AAGTGGACCGCAGATACTCCATTAGAGAACTCCTCCC 1348541 36 100.0 34 .................................... AAAAAAACCCCAAGAAGGGGGAGCCGCGCGGCTA 1348611 36 100.0 42 .................................... TGTTTAATTTTTTGATGAGGTTGTTTGGGGAGGTCCCCGACA 1348689 36 100.0 37 .................................... GTAGCCTACAACGCGCCCTTGGCGATCCCGCCATATG 1348762 36 100.0 37 .................................... AAGAGAGTAAGGTTTTGCAACGTTTCCGGTAACGACT 1348835 36 100.0 35 .................................... GTGGTAGCAATGCTTATTAGCATTGCTTGGATCGC 1348906 36 100.0 39 .................................... AAGGGGAAAACTAGCATTTTCTTTAGGGATGAACAAGGT 1348981 36 100.0 40 .................................... ACGATGTGCAGATCGGCTGGGTTCCGGTCGACGGCTGGGA 1349057 36 100.0 42 .................................... AACCCAAGAACAAACAGCTGCAGGCTGGGGACCCGCGCAGGA 1349135 36 100.0 34 .................................... ATCATAATGCGGAGTTAGGTAGGGATATACCTAT 1349205 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 17 36 100.0 38 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Left flank : CTTGTGTTTCTAATCTGGGAACATCATTTATTGTTGATGGACTTCATTTAAAAAGTTTAAATCAGTGGTACAGCAAATCAGTAGCTAAACTTAAAAGTGATAAACCGCAGGGTTTTTGGTCTAACAGATTAGCTGCTATTACCGAAAAAAGAAACCGACAAATGCGTGATGCAGTTAACAAAGCTGCAAGAATAGTCGTTAACCACTGTATTGAAAATAAGATTGGTGCTATTGTTTTTGGATGGAATAAAGGACAAAAAGATAGTATTGATTTGGGGTCTAAAAACAATCAGAAGTTTGTCCAGATTCCCGCAGCAAGATTAAAAGACCGTATTGCTCAATTATGTAAACAATACGGAATAGATTTTATTGAAACAGAAGAATCATACACTTCTCAATCATCGTTTTTTGATTGCGACAATATACCTAAATTCGGTGAAAAACCCGAAGGGTGGGAAGCAAGTTAAAAATTACGTCTCTCCAGTCCCTAAACCGGGCTT # Right flank : TCCCTCCATTTTAAGCCCTTGCCCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTCTTTTTCACCTCCACTACCCTCAAAATAATGGCTGAAACCCTTACCCCACAAGGCTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCAGTTCCTTCGTTAATTACTAGTTTTAGTGTCATTTGTATTACTTTACTTTTTAAATATACTTGGTTAATAAAATTTAAAATAAATCCTGGAATCCCCCTATTATAGAGAATTTATAGAATAATAGTCAATATTGTAGAACCAACAACATAATGTAACATTTAAATTTTCTAATGTCAGTCGTTTATTGGAGATTTTAGAGAACAAATCCAGCCAGGTTCTAGATGAGATGAAAAAACTATCCGAACCACTGTTTTTATTAACACTACTACTGGCGATCGCATGAGATTCAAAATACCCAATAGGCATCAAGTATAAAGTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 5 2090032-2091203 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073250.1 Cylindrospermopsis raciborskii N8 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 2090032 37 100.0 37 ..................................... TTTTTGGATATCGAAAGACAGTAGTTCGGATAGGTTT 2090106 37 100.0 38 ..................................... TTTAGGCGAATTATTTCTGTACTCCAACTATAGTTTGT 2090181 37 100.0 35 ..................................... GTGAATTTAATCTATGAACATAAGTAAAATTAGAG 2090253 37 100.0 41 ..................................... TTAATAATTAACCGCGTAAAACCCCACCCACAAGAGGATGG 2090331 37 100.0 36 ..................................... TCGGAAACTCAACCTGGAATATTAGCAGACTGATTT 2090404 37 100.0 35 ..................................... ATCTTATTTCCAGCAACAATACTTACCACCTCTTC 2090476 37 100.0 42 ..................................... GTCTTTCAAAAAGCCTATCTCTATGATGGTCTTTTGCTGCTG 2090555 37 100.0 40 ..................................... CGGTTCCGGTAAACCTGTTAGTGCATTAATTGATATAATC 2090632 37 100.0 36 ..................................... GTGTCCCTTCCGAGCTAGGAGACCCCGTATAAAGCA 2090705 37 100.0 38 ..................................... AAGAGGAGTACGTGTTTTTCCTGGATCCATACAATAGC 2090780 37 100.0 39 ..................................... TTTCCCATCCAAAGAGCCTGGATCTCGAAATACGACCGG 2090856 37 100.0 38 ..................................... CTAGTCCGGGAAAACCAAGGATTTTGATTATCTGGTGC 2090931 37 100.0 41 ..................................... AAAACGCCGTGGCACAAAACTAGAGGGTAATCTAGGAACAG 2091009 37 100.0 47 ..................................... TGGTTGTCCAAAGGTAATTAAAGTCAATTCTATATCAGGATAAACTG 2091093 37 100.0 37 ..................................... TAAGTAATCAGTTACAGTTCCGCTGCCAACCAAGTAA 2091167 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 16 37 100.0 39 GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Left flank : TGACTTTAAAAAAAGCCACTTCTGTAAATTTGGTTAATAATTCTAAAACAGTTAATGGAATGCTTAACTGGTCTGATTTGGTTACTAAACCTCAGCTCTTTGATTTAATTGCTTCAGCCTTACCCACTCGTTTATTAGAGAATGGTAAGTATTTGGTCTCTACTCGTCTATTAGAGGTTAAATTTGCTGATGATGAGGTGATTTATTTACCGAGTGATATGAATTACTTGGCTGCTCTGTAGAGGGATTTCTGCGAGTTGTCTGGGTTCTGGAGTTCATCTTTTAGGCTAATCATCTCTGAAGCTTTTGATTTGATTAGCTTTTTCTACTCCCGGTACTGGTTTCTTGTCTCGCATTTTTTAAAGGTTTGCTGTATGGTGGTTTGACTCGTTTTTCCCTGTACTTTCGTTCTACTCTTTTATGGTATATTCTATGTTAGCTCAATTCGCCTCGCAATATGTCTCTCTAGGCTACCTGCTGCAATGGTTTGGGCGATCGCC # Right flank : CCCACATTCCGCACCCTAAGCTGTGACAGATCAAAGAGGATCCTAATGTAGTACATAATAACTAAAATTAATTCAGGGATTAAAGGGCTTAATGAGAATAAATAGCATTAATAGAGACATGGTGTGAGAAAGTAAAGTTTGGTAACAAAAAAGAGAATTGATAACCAAATAAGAAATAATTGATTGCAACAGAAATAGTAGAGGAAACTGTTGTGAAATTAAAAAGTGAAGAAATAGAAATTCAGAATATAGGCCATCTAGGGATAGTAGCAGGAATAATAGATTCAATCGGAATAGTGGAAATAATAAATGAATTGATAGGAGTCGAAAAAGACGAAAAAGTAAATGCAGGTCAAGTAGTAAAAGCCATGATAATAAACGGGTTAGGATTTGTCTCAAAACCGTTATATATGTTTCCTGAATATTTTGAAACAATAGCCTGTGAACATCTAATAGGAGCAGGAGTAAAACCAGAATATCTCAACGATGATAAACTGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 6 3776077-3773740 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073250.1 Cylindrospermopsis raciborskii N8 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 3776076 36 100.0 38 .................................... CAAAAAATTCTTTCCACCAAACTTCTATTAGCTCTGGT 3776002 36 100.0 36 .................................... CCTTCTTGCGTGCAGTGGTTAGCACGTGAGTTAGGA 3775930 36 100.0 40 .................................... TAGTAAAAATTGAGGAAGAAAAAATCAACCTGAACCGCCA 3775854 36 100.0 41 .................................... GAGAGACTTGAGAGGACATTGGACCTCATTCAGTTTACGGA 3775777 36 100.0 35 .................................... GAAAAGTTAAAAATCCTACAATATGTTGATCTTTA 3775706 36 100.0 37 .................................... TTTATATGGTTCCACAGTCCGCATCGGAGTGGCGCAA 3775633 36 100.0 39 .................................... TTGTTCTTTAAGCTGGTATTAACTATGGATTTCGTTTTT 3775558 36 100.0 44 .................................... TTCTAGTCTTAACCACCATTGAAGGTGGTTTCCGTGGAGGGGTA 3775478 36 100.0 38 .................................... AAACTACCTACAATAGTGATTGTAGTTAATGGTTACTC 3775404 36 100.0 38 .................................... AAACTGAGTAATCAGTTTGGGATAATTGAAGGGAACGA 3775330 36 100.0 36 .................................... GGGGGAATAGAGAAGAGTGTTTAGTGTTAGTTGCGG 3775258 36 100.0 37 .................................... TTGTTGTTTTTTGGGGTAACATCCATGGATCTGTTTA 3775185 36 100.0 39 .................................... ACCATAAGCTTTAAGTCGTAGCTTGCTTAAACAGATGGC 3775110 36 100.0 35 .................................... TTGAATCCCATTTATGGGAACCAAACCCTGTACTT 3775039 36 100.0 40 .................................... CTCTACCTCTGTCCAAAGGTACAAGGTTATAGGTGGGTAC 3774963 36 100.0 37 .................................... AGGAGCAGTACTGGGATCTGCTCGTAAACCCACCGCA 3774890 36 100.0 40 .................................... AAACCAGAGCAGGAATATCCGCTACTAGAACAGTGGGATA 3774814 36 100.0 39 .................................... GGCTTCGATGGGGGATTTCTTTAACTTAGGTCAAAGAAA 3774739 36 100.0 38 .................................... CCCCGGAAAACCCCGCCCCCGGGAAAGAAGAGGTAGTT 3774665 36 100.0 37 .................................... AAGTTTGTCTCTAGGGGGCTGGTAAACGCAAAGTGCA 3774592 36 100.0 41 .................................... TTCCCTCCTTCGAGGAGGAACCCTTGGTTCCCTCCTTCGAG 3774515 36 100.0 35 .................................... ACCTCGTGGTTTGGGGTTCAGACATGGAAGATCTA 3774444 36 100.0 41 .................................... TGACTTTGGCTAAGTCTTGTAGACTTAAGAATGGTTCTCCT 3774367 36 100.0 38 .................................... TAGTAAACCCTCTATTTTAGGAAAAGTCTTGCTACTAT 3774293 36 100.0 38 .................................... GTAGAATTGCTAGAACAGACTTACTAGAGTGGGCAAGA 3774219 36 100.0 39 .................................... TTAACAATAGCAGAACATGGTACTGGCTTAGTTAATTTA 3774144 36 100.0 37 .................................... TGAATTAATCAGCCCCCCAGTAATACATTATAGGGAA 3774071 36 100.0 39 .................................... TTTATATGGGAGCGGGATAGCCACCATGAAACCGAGCTC 3773996 36 100.0 39 .................................... AAAATCTTTATCTTTCTATGGGGCTATAGAACCTAAAGC 3773921 36 100.0 36 .................................... CAACCAAAACAAGACATACATCCTCCTAAGAATGTA 3773849 36 100.0 38 .................................... CTTGACTCCTCCCTTGCCACCTTGACTCCTCCCTTGCC 3773775 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 32 36 100.0 38 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Left flank : ACTACGATCAATGGTGATCGATGAAACTGCTGTTGTCGAGACTCCCGCTAATGTCAGCACTTTGCCAATAATGCTACATTTGGCACTAACTTTCTGCATCAGTGTCAAGCAACTCCAGCATCTCATTTTGGTGCCTTATTAGTATGTTATTCTGCTTCTTGATATTTTCAAGGTGAGCTACTATTCTTTCCAAATCAGTGTCAAGCAACTCCAGCATCTCATTTTGGTGTCTTATTAGTATGTTATTCTGCTTCTTGATATCTTCAAGGTGAGCTACTATTCTTTCCAATATCATCACAATATGATTAATTCTGAACACCCATCTCACTATGGCGACTTGGATTATAAGGACTACTATTACTATTACTATAAAAAAAATGTAAATAACTTCCATATTATTTTGTGTGTAATATTACCAAGATTCAATAGTTTAACATTGTCATTGGTTTATACATGTTTCTATTCAATCAGTGTCCCCAGCGAGTGAGGTCTACTCTATT # Right flank : CCCTCCATTTTAAGCCCTTGCCCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTCTTTTTCACCTCCACTACCCTCAAAATAATGGCTGAAACCCTTACCCCACAAGGCTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCAGTTCCTTCGTTAATTACTAGTTTTAGTGTCATTTGTATTACTTTACTTTTTAAATATACTTGGTTAATAAAATTTAAAATAAATCCTGGAATCCCCCTATTATAGAGGATTTATAGAATAATAGTCAATATTGTAGAACCAACAATATAATGTAACATTTAAATTTTCTAATGTCAGTCGTTTATTAGAGATTTTAGAGAACAAATCCAGCCAGGTTCTAGATGAGATGAAAAAACTATCCGAACCACTGTTTTTATTAACACTACTACTGGCGATCGCATGAGATTCAAAATACCCAATAGGCATCAAGTATAAAGTTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //