Array 1 45826-46727 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAAHNX010000005.1 Streptococcus pyogenes strain GAS131204, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
     45826	    32	 100.0	    34	................................	TTTTTGGCTTCGTTGTGTAACAAATCCAGTGCGC   	
     45892	    32	 100.0	    36	................................	ATCGAATTAACAATTATTGCTTGATAGTAAAGTATG 	
     45960	    32	 100.0	    36	................................	ATAACCAAGTTTTGTATAAATATCACAATCAGTCTT 	
     46028	    32	 100.0	    35	................................	AGATTCGGCTAGATATTCCAAAAAATCGATAAAGC  	
     46095	    32	 100.0	    34	................................	TATATAGTCAGCCACATACTGCGGTACTTCTGGT   	
     46161	    32	 100.0	    34	................................	TAAATCACTAGTAATTGTATATTGTAATTTCACG   	
     46227	    32	 100.0	    36	................................	TGCGTTTGTTGTTGGATCCTGCGAAAAAGATATCCC 	
     46295	    32	 100.0	    37	................................	ACCAACTTGCTTTCCAATTTATCAATTTGGAGATAAG	
     46364	    32	  96.9	    35	..............A.................	ATGTTATTTCTCCTCGATCTCGTCCAAAAGTCTTA  	
     46431	    32	 100.0	    34	................................	GGAAGGAAATAGTTGTAAAAATGCCAAAAAAACT   	
     46497	    32	 100.0	    34	................................	TTTGGTTTAAGCTTAAGATTCACTACTCAATAGA   	
     46563	    32	 100.0	    35	................................	GAATAACTCTCCATCTTCATCAAGTGACGGTTCGT  	
     46630	    32	 100.0	    34	................................	ATTAGCACTGGTTATATTAAGTGCCGAGGAAAAA   	
     46696	    32	  96.9	     0	...............................G	|                                    	
==========	======	======	======	================================	=====================================	==================
        14	    32	  99.6	    35	GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	                                     	       

# Left flank :   AAGGCGATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACGGAAACACCTGCTGGTAGAAAAAGATTGCGTCATGTTGCCAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAAGCTAGCTTTCACAGAAACACCTTGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTGTGCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCA
# Right flank :  GATGAACCCGATCTCTCTTTTAATGAGGTCGGGTTTTTACATGCCTTTAGTCAACCATTTATCTGATAGCGTATCAAATTCAAGTTTTTGCATGTTCTAGTCTATGGTTTGCGCCACTAGCTTTCGGTAAACTAAGGGTAACTTAAGAGAGGAGTTATTTATGACACTATCACTTGTATTAATGGTATCGGTTTTTGGGGCAGGCTTGTTATCCTTTTTCTCTCCGTGTATCTTTCCGGTCCTTCCTGTTTATTTAGGCATTTTACTGGATGCAGATGATTCAAAGACGATTACTATATTTGATAAAAAACTCTATTGGTATGGCATTGTCAAAACCTTAGCCTTTATTTTTGGTCTATCTACTATTTTTGTGATTTTAGGTTACGGGGCTGGTTTTTTAGGAAATATCCTTTATGCGGTATGGTTTCGGTACTTACTGGGAGCCTTGGTCATTATCTTGGGGATTCATCAGATGGGCCTCATTACCATTAAGAGCTTAC

# Questionable array : NO	 Score: 9.24
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCACCCTTCATGGGTGAGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:53.12%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-5.50,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : NA
//