Array 1 806086-804345 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081928.1 Riemerella anatipestifer strain 20190510E1-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 806085 47 100.0 30 ............................................... CTACATCTGCTACACCTTTTATCGGGTTTA 806008 47 100.0 30 ............................................... TCTCTTATTTTTTTATTGATATGTTTGTAT 805931 47 100.0 30 ............................................... GGGAGTGTAGTGATAGGACAAGGGGCAGTG 805854 47 100.0 30 ............................................... GGGCTGGGGGCACTGCGTGCAGGGGACAAG 805777 47 100.0 30 ............................................... GCACCTATGTGGCATGATACAGAAGCTAAT 805700 47 100.0 30 ............................................... TACGTTCCACCGCTTTTCTTTTTAAATCCC 805623 47 100.0 30 ............................................... GCATGATCCCAAGCTATGTACGCTCCTGGA 805546 47 100.0 30 ............................................... TAATATTATGAACATTTGTAAAATCCTTAA 805469 47 100.0 30 ............................................... TCAACTATTCAGCAAATGTAGACGATACAG 805392 47 100.0 30 ............................................... AGCACGATAGAATTATGCTCATTGAGTTAA 805315 47 100.0 30 ............................................... GTATAAAAGACCAAGTGGAGATTACCCATA 805238 47 100.0 30 ............................................... AATTAGTTAATTCTCTGGGCGAGGTAGTTT 805161 47 100.0 30 ............................................... TTTCGGTTGCTATCCGAAACGATTCGGATC 805084 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 805007 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 804930 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 804853 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 804776 47 95.7 30 ........T...............G...................... TAATGGAGATTATAATATCCAGATACAAAC 804699 47 95.7 30 ........T...............G...................... TCTATCGAAGTGTTTAAAAACACTTGATTT 804622 47 95.7 30 ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 804545 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 804468 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 804391 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 23 47 98.6 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : ATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.87,4.91 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], //