Array 1 441879-440492 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR792632.1 Methanocaldococcus sp. SG7 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================================================================================================================================== ================== 441878 31 100.0 42 ............................... TACTTTGCCCACATATTACTCAACCAACTTTGAGAAATTAAC 441805 31 100.0 36 ............................... CTACTACCAATACTTCTTCCATCTGGCAGAAGTTAT 441738 31 100.0 36 ............................... AATAAATAGCTCATTAAACGATATTTCTCCCTTCGA 441671 31 100.0 38 ............................... TCCTTTTTTTGATAAAATCGTTAAATCTACACATCTAC 441602 31 100.0 38 ............................... CATTTTTTAATTTTGAGTTTTATTTTGTTGATTTTGCA 441533 31 100.0 37 ............................... AAATCTTTGTTAAATCCTCATTATTCATTTTATCACT 441465 31 100.0 38 ............................... AATTTTACAAAGTGCGGCGGGCAATATTTCACCTGTGG 441396 31 100.0 36 ............................... TATTTTTTCGATTTTCTCTAAATTTTTCATTAATTC 441329 31 100.0 38 ............................... CTCTTTATTAATGATATAAACTCTTGCTGTTTGTGATT 441260 31 100.0 37 ............................... AATGATAAATGGGCTTGGTATGTTAAGGGGAAGGTAT 441192 31 100.0 44 ............................... TCTAACATAGCGTAAACTTCTGATGCGGCAAGGGATTTCATTCT 441117 31 100.0 36 ............................... GAATGGATAAAAAAGGGCTTTGAAGAAAGATTAAAA 441050 31 100.0 37 ............................... TTTAGCTATACATTAAAAAATAATACATTATCATATA 440982 31 100.0 38 ............................... GTTGTAATTGCAATTTGGTTCATTACACACAAGCGTGG 440913 31 100.0 39 ............................... TTTTAATGTCGGTTTTATTAATATCTTCGGAGAAAATAT 440843 31 96.8 38 ..............................C TTTACTAAAATTGTTTTATGGATAGTGCCAGCAGGAAT 440774 31 96.8 38 ..............................C AGACATATTACAGTAATTTATGAAAATACCCCTGGAAT C [440757] 440704 31 80.6 148 ................C..A....AAA.G.. TTTAATTTAAGAGGCATTGCTGAGCGTTAGCGAAGCAATGCATCCCGGGTATCCCAATAGGGCGGAGCCCTATGGTTCGGGATATCTAAAATTAAACAAAAAGGCAAATATTCGGGGGTATACCAATAGGGGGCAGAGCCCCCTATGG T [440676] 440524 31 93.5 0 ..T...........................A | C,C [440506,440515] ========== ====== ====== ====== =============================== ==================================================================================================================================================== ================== 19 31 98.3 44 GTCTAAAATCAGACCCTAAGGGGATGGAAAT # Left flank : TTGTAATTATGTTCCATCTAATTCACCTTCGACTTAGTTATAAACCTAAATTCTTATTATTATTAGTGTATTTAATATTTTTATGGTGTTATAAATATACTTAGGATATTTAAAATTTATGCTTTTTGACATATTCTCTCTCGCTAAAAATTTTTATTTTTTGATTTAGAGGATTTTAATTTAATATTTTTTGATTTTAAGAATTTTTAACGAATTTCGAAGGGTCTTTTATTTTAAAGAATTTGAGTATTTAGTTTTATTAAATTATTGAGATTTTTAGGAGATTTTGGTAGTTTATTTTTATCTTCAATTTTCCCCGATAAAAAGGTTGATATTAAAAATTTAAAGAATTTTTAAGCAAATAAATAAAAATAGAAAAGTTTATATATAAGTTCGGAGGTATATAAATAACAAGGGTTATTGACCCTTCGAACTATAACCCATATAAAAAGAAGCATAATAAAGTAATTTTAGTCCTTAATATCAAAAAATTATGCCCT # Right flank : TTTTATTGTTTTTTAATTCTTCAATAATATCAAATCAAATTTAAAGGATCTGATTTTAAAAAAGTAAATAAAGAACAATTACTAAATAGATACTAAGATCTTGTTATATTACTCTACATTCACATATAAAAATATATAAATTTGGGGAGAAATATGTTGATAATTTTAGTAGGATTACCAGGAGTAGGAAAAACAACATTCTCAAAAAATTTAGCAAAAATTTTAAGTAAATTTAATATTGATGTTATTGTTTTAGGAAGTGATTTAATTAGAGAGAGTTTTCCAGTGTGGAAAGAACAGTATGAAGAATTTATTAGAAAATCTACTCAACTGTTAATAGATGAGGCATTAAAAAAATACTGGGTTATAGTTGATGATACAAACTATTACAACTCAATGAGGCGAGATTTAATAAATTTAGCAAAAAAATACAATAAAAATTATGCTATAATTTACCTAAAAGCACCCCTTGATATATTAATTAAAAGAAATATTGAGAG # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.58, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAAATCAGACCCTAAGGGGATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 589907-588384 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR792632.1 Methanocaldococcus sp. SG7 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================================================== ================== 589906 32 100.0 33 ................................ AGTTTCGTAGTCATATCTCATAGCATAATGTGT 589841 32 100.0 37 ................................ AAAAATCTTCATCTTTTCTTGTATTGAGCCATTCTTC 589772 32 100.0 39 ................................ TTACTTCCATAACCTAAAATTTTCTTAAAATTGAAAAAG 589701 32 100.0 35 ................................ TCAAATTCAACTAACTTACCTTTATGAGTTTTCCT 589634 32 100.0 38 ................................ ACAGTTAAATACTAACTTTTTTATTTTACAATTTTTTT 589564 32 100.0 36 ................................ AAATTTTTGAAATTTTTAAAAAAGAGGGATAAAATG 589496 32 100.0 35 ................................ CTTAGCTGCATACATAAGTCAAGCAATCAACACAA 589429 32 100.0 35 ................................ CCATTCTCTTGCAGCTGGTTTTCCTCCCAATCCAG 589362 32 100.0 37 ................................ CTTTTCCTTTTTTCCTTAACTTGTCTCCAACGAACCT 589293 32 100.0 34 ................................ ATAGTTGTATCAAACCACAATACCAACCTATTAT 589227 32 100.0 33 ................................ TTTTTTAAAATTTCAAAAATTTAGGTTATGGGA 589162 32 100.0 38 ................................ ATTCTATGCCCACAAATCTCAAATGTATGCCACCTAAC 589092 32 100.0 40 ................................ ATTGTTGCTTCTTTGAATATTTCAATCATTTCATCATCTG 589020 32 100.0 41 ................................ GTTTCTAAAGCCCAAAACTTCTCTCCATTCTCATCAATATA 588947 32 100.0 36 ................................ CATATAATTTTTAAGAGTATTTAAATATATAACATC 588879 32 100.0 44 ................................ TCTATCCACTTTGGTTTGTTAGTTTTTGGTTGTGTATTGTTTTG 588803 32 96.9 36 ...............................A AATAGTAGAATGACTATAAGGAATGCGTTAATAATT 588735 32 96.9 38 ...............................G AAATTAATAAATCATTTTCCGTAATATCTTCAATACTT 588665 32 100.0 38 ................................ ACTTGTGCTAAATCTTCCATATGAGAGATAGTAATAAT 588595 32 93.8 39 .............................T.T TCTGGAACATCTCTCTTATCTTCAACACTGCTATTATCT 588524 32 71.9 75 ..T..............A.....A.AAATG.T TTTAATTTAAGAGGCATTGCTGAGCGTTAGCGAAGCAATGCATCCCGGGTATCCCAATAGGGCGGAGCCCTATGG 588417 32 81.2 0 ..T............T......AA......TA | A,C [588387,588407] ========== ====== ====== ====== ================================ =========================================================================== ================== 22 32 97.3 39 GTCTAAAATCAGACCCCTAAGGGGATGGAAAC # Left flank : TATGTCAAAATTAGAATCAACCATCTTATCCCTAATTCAGTAATTTATATTGTTTTTGTATTTTAAGTCATTTATATATATCTTTGGTTATATCTGTCTATATAATGTAAAATAATTTATGCTTTTTGACATATTCTCTCTCGCTAAAAATTTTTATTTTTTGATTTAGAGGATTTTAATTTAATATTTTTAAATTTTAGGGGATTTTATTAAATTTTGGAGGGTCGTCTATTTTGATTAATTTGAGTATTCGGTTTTATTAAATTATTGAGATTTTTAGGAGATTTTAGTTAATTGTCTTTATACCTAATTTTCTCCGACAATTAGGTTAATATTAAAAATTTAAAGAATTTTTAAACTAATAAATAAAAATAGAAAAGTTTATATATAAGTTCGGAGGTATATAAATAACAAGGGTTACTGACCCTCCGAACTATAACCCCCCAACAAAGAAGCATAATAAAGTAATTTTAGTCCTTAATCTCAAAAAATTATGCCCT # Right flank : TTTAAATTTTTTATTTTTAATAGCATAAAAAATTTATATATAGAAATATATAAATTATTAGAATATGTAATACAACATTAATTTTTATATAGTTCAATAAAATAAGTAATTCCATCCAGTTTTTTAAAACAAAATTATTGAGGGGAATTATGCATTGGGCTGATGTAATAGCTAAAAAATTAATTGAAGAGAAAAAAGTAGATAAGTATGTAGTGGCTACTGGAATAACTCCTTCGGGACATATTCATATAGGAAATGCAAGAGAAACACTGACAGCAGATGCAATTTATAAAAGTTTAAAAAATATGGATGTTAAAGCAGAATTAATATTTATAGCAGACACTTACGACCCTTTGAGAAAGTTGTATCCATTTTTACCAAAAGAGTTTGAACAATACATTGGAATGCCTCTAAGTGAAATCCCTTGTCCAGAAGGTTGCTGTGAAAGTTATGCTGAACACTTTTTAAAACCATACTTAGAGAGTTTAGATAACTTAGGA # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAAATCAGACCCCTAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [95.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 611398-609924 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR792632.1 Methanocaldococcus sp. SG7 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================================================== ================== 611397 32 100.0 37 ................................ CTTTTGTGTTGATAGCTTGTGATATGTATGCAGCTAA 611328 32 100.0 38 ................................ TATTTTCCACCCCAAATATTGCTATTATCATATTTCAC 611258 32 100.0 39 ................................ ATCTATTGTTATAATGCTGTTTGCAGGGATAATTTTCTT 611187 32 100.0 37 ................................ GCATCTGTCAGAGGGATGTTTTTTGAGCTTCCTGGAG 611118 32 100.0 38 ................................ TGTCGTTAAAATTTTCCAGCATAACTTTTCTATATTTT 611048 32 100.0 38 ................................ TTTTTTTTTCTTCCTCTTCAACAGTCTCTTTTTCTAAA 610978 32 100.0 35 ................................ ATACCCACCCGCCAGCCAGCCCAAAACCCCAACCC 610911 32 100.0 39 ................................ TGGAACGTACATAGAGCTTTGAATGTTTTAGTCTCCTCA 610840 32 100.0 37 ................................ TCGAACTCTCTAATGACATACATTGAGGATGAACATT 610771 32 100.0 36 ................................ TAAATTCGTAAAGACTATATAACATTGCCCATCATC 610703 32 100.0 42 ................................ AACAAATTGATAATGATATGGATAAATTTCTAAAAGTTCAAC 610629 32 100.0 37 ................................ AACGCATAAATGTGGATGTCTGAAACGGATGATTTTT 610560 32 100.0 40 ................................ CTAAATCCGTTTTAGAACAATTAGGACAACCAACCGAAAT 610488 32 100.0 37 ................................ ACAGTTGAAATAACAGGTGCTCCTGCAATTAATGTCC 610419 32 100.0 45 ................................ AGATTGAATATAATGAATTAAATTACATTCACATTCACAACAACA 610342 32 96.9 38 ...............................G CTGAAAGAATTAAAATTGGTAGTATCGAAAAAACAAAA 610272 32 100.0 39 ................................ GTTGCTCTCTCTTCTCCTATTTTTTATTGTCAAATCGTA 610201 32 100.0 38 ................................ TTTTCATTAGTGTCTATTACTCCCCAGCCGTTATTATC 610131 32 100.0 37 ................................ CTAATAACTCTATTTGTTCTCTTAACATCTTTTGTGT 610062 32 84.4 75 .........................AAAT..C ATTAAATTAAGAGGCATTGCTGAGCGTTAGCGAAGCAATGCATCCCGGGTATCCCAATAGGGCGGAGCCCTATGG 609955 32 93.8 0 ..T..........................T.. | ========== ====== ====== ====== ================================ =========================================================================== ================== 21 32 98.8 40 GTCTAAAATCAGACCCCTAAGGGGATGGAAAT # Left flank : AGGTTATAAAAGCGTATATGATAGATGGGAAATTATTTTATATTTGATAAAAGATGTTGAAAGGAGAGCAAGATATGTGGAATAAATTTTTGAATATATATTTGTCTTTATGAATGAATTACTTTATATAATTCCTTCTCTCGCTAAAAAATTTTATTTTTTGATTTAGAGGATTTTAATTTAATATTTTTAAATTTTAGGGGATTTTATTAAATTTTGGAGGGTCGTCTATTTTGATTAATTTGAATAATTAAGTTTATTAAATTATTGAGATTTTTAGGAGATTTTGGTAATTTATTTTTATCTTCAATTTTCCCAGATAAATAAGTTAATAATAAAAATTTAAAGGATTTTTAAGCAAATAAATAAAAATAGAAAAGTTTATATATAAGTTCGGAGGTATATAAATAACAAGGGTTATTGACCCTTCGAACTATAACCCCCCTACAAAGAAGCATAATAAAGTAATTTTAGTCCTTAATATCAAAAAATTATGCCCT # Right flank : TTTTAAATTTTTAATTTTATTTTTTAATACCATAAAAATCCATAGGTTTGTATATTTATATTATTTTTAAAAGTAATAATGACCCTCAGGAAAATTTCAGTTAGGATAATAAAAAATAACGAAAATACTAAAAAATTATTATGACAATATTAAAATTTTTTAAAATCTTAATAAATAATAAAAAAATTAAAATTTTTTATTAATAATTATTACCTAAACTGAAAAAATCTCGAAATTATGTATTAATTATTATGAATAAATTTTAAAAATGTATTAAAAATATATAAGATAATTTTAAATATTTGAAAAAAGAAGTGTTATAATCATTAAAAAGGATAAAGGCGAAGGAGAATGTATATAATCATAGTTTATGATGTGAATGTTGCGAGAGTGAATAAAGTTAAAAAATTCCTCAGACAGCATTTAAACTGGGTTCAAAATAGTGTATTTGAAGGAGAGGTAACAGATGCAGAGTTTGAAAGAATAAAAGATGGGCTTTT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAAATCAGACCCCTAAGGGGATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 4 847957-849246 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR792632.1 Methanocaldococcus sp. SG7 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================================================== ================== 847957 32 100.0 43 ................................ ATTTCTTTAATATTCTCTGACACTCGTAAAACATATCCCGTTG 848032 32 100.0 38 ................................ ACACTTCGACAATTGCCGCACCCATTTACATCACCTAA 848102 32 100.0 40 ................................ CAAGAAATTCTTTTAAATCTTCTAAAACATCATTATAGTC 848174 32 100.0 38 ................................ ATTCTTGCTATAATGTTGCTTTTCTTTCTTTCTTTTTT 848244 32 100.0 37 ................................ TTGATAATAAAGTTTTTAAATGACCTTAAACGGTTTT 848313 32 100.0 52 ................................ TTATTTCGTATGCTACACATAAGGCAATCAATCCGTTTATATTACAATCCTC 848397 32 100.0 39 ................................ AAAAGTTATCATCAAAGAATTGGAAAAAATATTAGACAA 848468 32 100.0 37 ................................ TATTTATGTTTTAAAACGAGTGCTACAACATAACCGT 848537 32 100.0 35 ................................ TTTTGTTTTCATACGGAATCGGTCTGATTTTAAAA 848604 32 100.0 37 ................................ ATAGAAACTGCAAAAGAAATAACCGAAAAAGGGCTTT 848673 32 100.0 38 ................................ ATCATTCTAAATTTTGTTTTATTATATTTTGCTAAGTT 848743 32 100.0 45 ................................ TTCTTTAACAATCCTCTTGGCAACAGTTATATGCTTTTCCCCTTT 848820 32 100.0 45 ................................ AGTATTAGAAATATTAAAAATGCAATTACATTGAAAATTATCCTA 848897 32 100.0 40 ................................ TAATTTACTTAATTTTTCCTGACTAATTAACCATTTTCTA 848969 32 100.0 38 ................................ AATACTGGTTCAACTGTTTTATAACTGCCCATATATTC 849039 32 96.9 36 ...............................T TATATAATGTGTAATCATAAACACTCCTATCAAGTA 849107 32 84.4 75 .........................AAAT..T ATTAAATTAAGAGGCATTGCTGAGCGTTAGCGAAGCAATGCATCCCGGGTATCCCAATAGGGCGGAGCCCTATGG 849214 32 96.9 0 ..T............................. | A [849218] ========== ====== ====== ====== ================================ =========================================================================== ================== 18 32 98.8 42 GTCTAAAATCAGACCCCTAAGGGGATGGAAAC # Left flank : CCTATTGGTATACCCCCGAATATTTGCCTTTTTTGTTTAATTTTGGGTATCCCAATAGGGCGAAGCCCTATGGTTTGGGATACTCCCTATGCATTGCTTCCTAAAGGAAGCAATGTCTCTTTTTTATAATCTGTCTTCCCTCGCTAAAAATTTTTATTTTTTTATTTAGTTGATTTTAATTTAATATTTTTAAATTTTAGGGGATTTTATTAAATTTCGGAGGGTCTTCTATTTTGATTAATTTGAATAATTAAGTTTATTAAATTATCGCGATTTTTAAGATAGTTTGGTTATTTGTTTTTATCTATAATTTTCCCCGATAAATAAGTTAATAATAAAAATTTAAAGAATTTTTAAGCAAATAAATAAAAATAGAAAAGTTTATATATAAGTTCGGAGGTATATAAATAACAAGGGTTACTGACCCTCCAAACTATAACCCCCCAACAAAGAAGCATAATAAAGTAATTTTAGTCCTTAATCTCAAAAAATTATGCCCT # Right flank : CACATCTTCTTTAGTATTTCAACATTTTTTAATTATCCTATCTAACATCTAATTATTTAAATACTTGCATACTTCTAAAAATATTACTTAACCTTGACAAAATCTAATTTTTGTATTACTAAATAAGAAAAATATCTAAAATTTCATACTATTATATTATAAACTTATTAAATTTATTGATTTTGTAATAAAAACTAAAATTTTTACTTATTTATTATTACTCATTTCCAAAAAATCCTAAAACCATATATTATTTTTTAATACTAAAATTAAAAATTATATTAAATAAAACTATAACTTTTTCAGCTCAAAATTGTCTAAAACAAATATCTCAAAGTTATACTTTTTTGCCTTACTGATTATTTTATCATCTGAATCTAACAAACAGAATATTATTCTAATATTCCTATTTGTTGCTATTGGAAGATTTTTTAATTTATCTAAAACTTTTGCAATTTTATCCATTTTTCTTAAAGCCCTTTTATTGTTAGTTTCTATTT # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAAATCAGACCCCTAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 5 885186-886795 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR792632.1 Methanocaldococcus sp. SG7 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================================================== ================== 885186 32 100.0 33 ................................ TGCATTTGAGATTTTGAAATTTAGTTATTCATT 885251 32 100.0 34 ................................ TAGCCCACCAGGGGGCGTCATCGATGTCTGTTTT 885317 32 100.0 38 ................................ AAACCACAACCTAAGCAAACCAAACTAAACTTCTTAGA 885387 32 100.0 37 ................................ ATAAACTTTATTACGACTTCTAAAATGAGATTGTAAG 885456 32 100.0 38 ................................ GTGTTTTCCAAATCTACACACATAATCTACATCTATCT 885526 32 100.0 50 ................................ TACATTAATGTCTATTTTCTCAACATTCCTGTTAAATTTTTTTACATTAA 885608 32 100.0 35 ................................ GAAACAGGAAATTTAGATATTGATAAGATAATTTA 885675 32 100.0 39 ................................ ACATTTTATTCTTTTTGCATATAATAATCACATTTTGTT 885746 32 100.0 36 ................................ ATAACTTCTTTAAAACTAAATTCTTTATCGTTTATA 885814 32 100.0 36 ................................ ACAGATATTAATAGATTTAATAGTGTATTAGATGCT 885882 32 100.0 43 ................................ TATCGTCATCAAAAAATTATTTTTTAAATATTCTTCTTTTATG 885957 32 100.0 42 ................................ AAAAGTTCGAATCATAATATATCTTTATTTATTTTTCTTTCA 886031 32 100.0 33 ................................ AGTAATACCCATCGACATATTCTATATGAAGTG 886096 32 100.0 38 ................................ ATATTAGGATTATCAGCAAGTCCAAAGACATCATCTAA 886166 32 100.0 36 ................................ GATAACAATATGACACTAATAGCAATATAGAGGGAT 886234 32 100.0 40 ................................ ACAGGGATTAATAATAAAAACTCCGACTGTCAAATTTACA 886306 32 100.0 41 ................................ GAACTGTTGTCAGAAGAGAGTTCTTTAATAAATACAGACGA 886379 32 100.0 37 ................................ ATATATACTTGGACATCCATAATACCTCCCCATACTG 886448 32 100.0 37 ................................ GATTCTCTATCTACTAAAATGTAGCCCATAAAATCCC 886517 32 100.0 36 ................................ GATTGAGGGATTACAAACAGAAAACAGATATGCTGC 886585 32 100.0 39 ................................ GTCGTTAGTTAATAATCCGAATGTTGTTGATATTTTGAT 886656 30 90.6 78 ........................--.A.... GATTTTAATTTAAGAGGCATTGCTTCCTAAGGGAAGCAATGCATCGGGGGTATACCAATAGGGGGTATCCCCCTATGG 886764 32 96.9 0 ..G............................. | ========== ====== ====== ====== ================================ ============================================================================== ================== 23 32 99.5 40 GTCTAAAATCAGACCCCTAAGGGGATGGAAAT # Left flank : GTCAACTTTTTTTACATTTATTGTTGGCATATAATCACCAGCACTATTTTTTTAATAATTTTATTAATAAAATTCCATCAGATATTTTAATTTATCTCTAATATTTTAGTTTAAGTTTGTCAATGTAGTTATTATTTATCACGCTAAAAATTTTTATTTTTTGATTTAAAGGATTTTAATTTAATATTTTTAAATTTTAGGGGATTTTATTAAATTTCGGAGGGTCTTCTATTTTGATTAATTTGAATAATTAAGTTTATTAAATTATCGCGATTTTTAAGATAGTTTGGTTATTTGTTTTTATCTATAATTTTCTCCAACAATTAGGTTAATATTAAAAATTTAAAGAATTTTTAAACTAATAAATAAAAATAGAAAAGTTTATATATAAGTTCGGAGGTATATAAATAACAAGGGTTACTGACCCTCCGAACTATAACCCCCCAACAAAGAAGCATAATAAAGTAATTTTAGTCCTTAATCTCAAAAAATTATACCCT # Right flank : TCAAAAAGGATATAAAAAAGATAAAGATTTTTTATCAATTTTTTTATCCAAATATTAAAATAAAAAGAAGCACAATAACATATTTATACCCAAAAACATAGTATTTTAAATAATATTACAACATATGGGGGTTATTATGAAGATTTCTATATGTGGAAAAGGTGGATGTGGAAAAAGTACAATATCTTCTTTAATTGCAAAAGAATTTGCTAAAAAAGGTTACAATGTTTTAGTAATTGATGGAGATGAATCTAATATCAGTTTGCACAAATTTTTAGGGATGAATCAACCAAAAGATTTTATAGAATACTTAGGCGGCAGAAAAATTTTCATGCAAAAGGTAAAATCTAAAAAAAATGTTGATTTATTTGATGAAATGACAATTGACGATTTACCAAAAGATTACATAGTTGAGAAAGACAATATAAAACTTTTAGCTATGGGTAAAATCCACGATTTTGGAGAAGGTTGTGCATGTCCAATGGGTGTTTTATTAAGAG # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAAATCAGACCCCTAAGGGGATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 6 1272129-1272930 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR792632.1 Methanocaldococcus sp. SG7 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================ ================== 1272129 32 96.9 38 A............................... GCTCAAACCAGAACAGAAGGAGAAGTATTTTTAAGAAA 1272199 32 96.9 42 A............................... TGCGTGTTGTCATTTTACGAAGATGAAAAAAGATACATAGAA 1272273 32 96.9 36 A............................... ACGATATTTTCAGATAAGCCATAATAACCTTGAATT 1272341 32 100.0 44 ................................ GATAAAAAAACTCACATCGAGGCGATAAAACTGCATGAAAACGT 1272417 32 100.0 38 ................................ TTACTAATTGACTTTGCTTTTTCAGATTTTATGGCACT 1272487 32 100.0 35 ................................ AAAAATGAAATCTTAGAAATTGGTGTATCTGACGG 1272554 32 100.0 39 ................................ GTTTTTTTATATGCAAATTCTTTTTTGTATATTGAACTT 1272625 32 100.0 34 ................................ AGTTTTGTAATAAATAAAGAACATTTTCTGATGT 1272691 32 100.0 37 ................................ TATCAGTTCCCATTGCATAACCTAATATATCATCAAC 1272760 32 100.0 36 ................................ AGTTACTGTTTGTGGATGGTGTTACTGGAAAAGTGT 1272828 32 100.0 39 ................................ AATTTCAACAGATAATCTTAACGAAAAAGTTCGGAAATA 1272899 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ============================================ ================== 12 32 99.2 38 CTTTCCATCCCCTTAGGGGTCTGATTTTAGAC # Left flank : AAGCCCATATCTACAATACTTATTCCCATGTGTGGGTCTGCAACTGTTTTTAGAGCCATTATAACATCTTCTTTAGTAACCATAATTACACCTCATTTTTTATTTTTAATTTATGGATACCCTTATAAATATTTTATTTGGGTTGTTTTAATGTTTTAAATATTGTGGAAAATATAAAGATTTCTTTTAAACTATTATGTAAGTATTATCTCATTTTATATACCTTTTTATATAATTTAAAATTTATTCATAATAATAAATACCAAATCTTGGAATTTTTTAGGAAAGATGATAATAAATCATAAAAAAATTAAATTTTTCTTATTATATATTAAAATTCTATAAATATTTAGAATTATCATAATAATTTTTTGATATTTTTATTATTTTGTAACAAAAATTTTAGAATTTACCGAAAGTCGTTATTACTTTTAAAATATATGTAAATGTAGAAATCTATGGATTTTTATGATACTAAAAATAAAATTAAAAATTTAAAT # Right flank : CAGGGCATAATTTTTTGATATTAAGGTCTAAAATTACTTTATTATGCTTCTTTGTTAGGGGGTTATAGTTCGAAGGGTCAATAACCCTTGTTATTTATATACCTCCGAACTTATATATAAACTTTTCTATTTTTATTTATTTGCTTAAAAATCCTTTAAATTTTTATTATTAACTTATTTATCTGGGAAAATTGAAGATAAAAATAAATTACCAAAATCTCCTAAAAATCTCAATAATTTAATAAACTTAATTATTCAAATTAATCAAAATAGACGACCCTCCAAAATTTAATAAAATCCCATAAAATTTAAAAATATTAAATTAAAATCCTCTAAATTAAAAAATAAAATTTTTTAGCGAGAGAGGGTAAATTATGAAAAAGGGACATTGCTTCCTTTAGGAAGCAATGCATCGGGAGTATCCCGAACCATAGGGCTTCGCCCTATTAGGATACCCAAAATTAAACAAAAAATGCAAATATTCGGAGGTATTCCGAACC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCATCCCCTTAGGGGTCTGATTTTAGAC # Alternate repeat : ATTTCCATCCCCTTAGGGGTCTGATTTTAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 7 1346283-1347789 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR792632.1 Methanocaldococcus sp. SG7 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================================================= ================== 1346283 31 100.0 44 ............................... ATTGCAGCAATGAGCTCCTTTTCAGATAATATTGATTCGTCTAA 1346358 31 100.0 41 ............................... ATATCTAAGTCCTTAACGTGCCATGTTCTTGTTTTTTTCCA 1346430 31 100.0 39 ............................... ATCTTTTCACCTCTAAAAATCGCTATTATCATATTTTAC 1346500 31 100.0 41 ............................... AAACATTATCAATATTATTTTTAGCTTGATAAATCAATTGC 1346572 31 100.0 37 ............................... AAATTATAGATTTATTAAGAAGAATTTAAAGGTGATA 1346640 31 100.0 38 ............................... TATTAAGAAAATCTGTGTTAATGCCGTTGGGTCATTAG 1346709 31 100.0 42 ............................... TGTATATTCTCTTTCGGAAATCTTTGTTATCAAATCCTATGA 1346782 31 80.6 77 ........................GAAA.TG ATTTTAATTTAAGAGGCATTGCTTCCTAAGGGAAGCAATGCATCGGGGGTATACCAATAGGGGGTATCCCCCTATGG 1346890 31 96.8 46 ..T............................ TTCATACACCATCTTATCTCCTTTATATATTGCTACATATACATTT 1346967 31 100.0 42 ............................... TATTTTTCAGCTTTTGCTAATTGCATAAGCATATTTATTAAA 1347040 31 100.0 42 ............................... TTTAACAGCACTTAAAACATCCTGAGCATATCCCATATTATC 1347113 31 100.0 39 ............................... TCCTATAATATCCTTCAAATATTCCTTATATATCGGCGG 1347183 31 100.0 38 ............................... TTTTTAATTTTTCCCAATACATGAACAAAGCATGTTTT 1347252 31 100.0 43 ............................... TATATGAACATAGATTTTTTTAAATAAACTAACTATTTCGTTG 1347326 31 100.0 43 ............................... TGAGAATTGTGTTCATATTAATGAAGTTAAAGTCTATATCTTA 1347400 31 100.0 41 ............................... TTTAATTGTAATGCCACATCTTCAAGTTTTCTCTTAATCTC 1347472 31 100.0 40 ............................... TGCTGTCGTAAATCTCGTCTGCATCTACTTTATCGTGAAT 1347543 31 100.0 41 ............................... TACGCATAAAGGAAAGATGGAAGTTGTAGAGGGAACTTGTC 1347615 31 100.0 40 ............................... GGTTTGTGAGTGGCAGATTGCCGAATTCTATACTTTTATT 1347686 31 100.0 42 ............................... CTTTCTATAATTGTCATCTATTAAAAATAACTCTACATCTGA 1347759 31 77.4 0 ..T............T.........AAATG. | ========== ====== ====== ====== =============================== ============================================================================= ================== 21 31 97.8 43 GTCTAAAATCAGACCCCTAAGGGGATGGAAA # Left flank : ACAGGGATTGGTTGTTCTTTAATAATTATCCCACTTATCGAGCACATATTCCTCACATTTTAATTTAAAAAGTTATTTGTAGTTAAGAGTATATACAGGGGTTAGGATATTTAAATTTTATGTTTTTAGTATATCTTCTCTCGCTAAAAATTTTTATTTTTTAATTTAGAGGATTTTAATTTAATATTTTTAAATTTTAAAAGATTTTATTAAATTTCGGAGGGTCTTCTATTTTGATTAATTTGAATAATTAAGTTTATTAAATTATTGGGATTTTTAAGAGAATTTAGTAGTTTATTTTTATCTCTAATTTTCCCCGATAATTAGGTTAATAATAAAAATTTAAAGAATTTTTAAAGTAATAAATAAAAATAGAAAAGTTTATATATAAGTTCGGAGGTATATAAATAACAAGGGTTACTGACCCTCCAAACTATAACCCCCCAACAAAGAAGCATAATAAAGTAATTTTAGTCCTTAATCTCAAAAAATTATGCCCT # Right flank : ATTTTAATTTAAGAGGCATTACTGAGCGTTAGCGAAGCAATGCATCCCAGGTATCCCAATAGGGGGCAGAGCCCCCTATGGGATGGGAATATTTAAATTTTTAATTTTATTTCAGTATCATAAAAATTCATAGATTTCTATATTCACATATATTTTAAAAGTAATAACGACTCTCGGTAAATTCTAAAATCTTTATTATAAAATAATAAAAATATCAAAAAATTATTATAATAATTCTAAATTGTGGTAGTTACACTGTTTATTTATAGAATTTTAATATATAATAAGAAAAATTTAATTTTTTTATGATTTATTATCATCTTTCCTAAAAAATTCCAAGATTTGGTATTTATTATTATGAATAAATTTTAAAAATGTGTATGCATAAAGAAAAGTAAATTAATATAATATAGTTTTTCCATACTAATTTAAAATAATATTTTGTGAAACTATGTGTATTTTAATTATTTGTGAAAAGCCAAGTGTTGCTAAAAAAATAG # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAAATCAGACCCCTAAGGGGATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //