Array 1 347-184 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBDE010000009.1 Bacillus pumilus DW2J2 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 346 32 100.0 32 ................................ GCGATAATGGCTTTTTTCGACCATTTTTCTGT 282 32 100.0 35 ................................ ATTTCATTTTCAAGCTTCACCCAATGGCAGCCGCG 215 32 87.5 0 ...................TA........GG. | ========== ====== ====== ====== ================================ =================================== ================== 3 32 95.8 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GCAGTCGCACTCTACATGAGTGCGTGGATTGAAATGCGATAATGGCTTTTTTCGACCATTTTTCTGTGTCGCACTCTACATGAGTGCGTGGATTGAAATATTTCATTTTCAAGCTTCACCCAATGGCAGCCGCTGTCGCACTCTACATGAGTGTATGGATTGAGGTAGCTTGAAAGAAATGTTGACAGTTGCGCTTGATTTAGGTGTTAAAAACATGACTCTGGCCCAGTAGTCATGTTTTTAAATGAATTCAAAGCTGTTGATGAAACAGTAAAATAAGTATGTTTTCAAGAGCAATAGTTTTTAATTAAATAGGATTAATAAAAATTTGGTGCAAATGTGAGGTGAACATAAAAACCCCGGGACATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTTTATTGTTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTCGGCTATCATTCCCTAAAAAATGTTATAATTAGGGTAGAAATCGCA # Right flank : TAGCTTGAAAGAAATGTTGACAGTTGCGCTTGATTTAGGGGTGAAAAATATGACTCTGGCTCAGTAGTCATGTTTTTAAATGAATTCAAAACTGTTGATGAAATAATGAATAAGTACCTTTAGAGCAATAGTATTTAATTAAATAGGAATAAGAAAAATTTGGTGCGAATGTGAGGTGAACATA # Questionable array : NO Score: 8.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 844-681 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBDE010000009.1 Bacillus pumilus DW2J2 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 843 32 100.0 32 ................................ GCGATAATGGCTTTTTTCGACCATTTTTCTGT 779 32 100.0 35 ................................ ATTTCATTTTCAAGCTTCACCCAATGGCAGCCGCT 712 32 87.5 0 ...................TA........GG. | ========== ====== ====== ====== ================================ =================================== ================== 3 32 95.8 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAGGAAATAGCCGACCGGCTAGGCGAAACGAGACAAAATATCTCAAACATACACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGAACGAAGAAAAAATGACCAATGGGGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAGTAGACTGGCTGATTTACCAAGAAGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGGAACTGATGGTGCGAATGTGAGGTGAACATAAAATCCCTGGTGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATCATTCCCTAAAAAATGTTATAATTAGGGTAGAAATCGCA # Right flank : AGCTTGAAAGAAATGTTGACAGTTGCGCTTGATTTAGGTGTTAAAAACATGACTCTGGCCCAGTAGTCATGTTTTTAAATGAATTCAAAGCTGTTGATGAAACAGTAAAATAAGTATGTTTTCAAGAGCAATAGTTTTTAATTAAATAGGATTAATAAAAATTTGGTGCAAATGTGAGGTGAACATAAAAACCCCGGGACATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTTTATTGTTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTCGGCTATCATTCCCTAAAAAATGTTATAATTAGGGTAGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATGCGATAATGGCTTTTTTCGACCATTTTTCTGTGTCGCACTCTACATGAGTGCGTGGATTGAAATATTTCATTTTCAAGCTTCACCCAATGGCAGCCGCGGTCGCACTCTACATGAGTGTATGGATTGAGGTAGC # Questionable array : NO Score: 8.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 19182-18816 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBDE010000016.1 Bacillus pumilus DW2J2 contig16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 19181 32 100.0 35 ................................ CTACCGCTATTTGCAATGTCCGTAAAGGCGTATGG 19114 32 93.8 34 .............CT................. CTTCTCTGCTTTTGGGGTGTATTTAAAAGTTGTA 19048 32 100.0 35 ................................ ATTTTTTCGAACACCTCGTCTAGCGTTGCCTTTGG 18981 32 93.8 36 ...........C......A............. ACATAATATTGACCGCTGTTTTTCACAATGGATAAT 18913 32 93.8 34 ...........C...................G TATGTATTCAATTGACTAATGCTCAATGTTTGAA 18847 32 81.2 0 ...........C.......TA......A.GG. | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 93.8 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : GCCTGAGACAGTAAAGGGAGCATTCAAAGTAGATGTGATGACACCACATCATTCAGACTACAACAGCGTCAAGCTAGATAAGATGAACAAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCAACACCGATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTAAAAACAAAAAAGAATCTACCAGAAGATGCGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGAGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCAGGTTATGGAAGACTTAAAATGGACGACGTCATTTCATAAGACTAAGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGAAAAAAATGAGAAAAAATGTATATTTTTTAGGTGTGAAAACAAACTTCTATATAGAAACTTAAGGGTTTTGACGATTATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : AGCTTGAAAAAAATGTTGACAGTTGCGCTTGATTTAGGGGTGAAAAACATGACTCTAGCTCAGTAGTCATGTTTTTAAATGAATTCAAAATTGTTGATGAAATAATGAAATAAGTACCTTTAGAGCAATAGTTTCTAATTAAATAGGATAATAAAAATTTGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTATATGAGTATGAGGTATAAAATTCTTATCAGAAGGTAGCTTGAAAGATATATTGACAATTGCGCTTGATATAGGTGTGAAAAACATAACTCTGTCTCAGCCATTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTTTAAATAGGATTAAGAAAGATTCGTGCGAATGTGAGGTGAACATAAAATCCCTGAGGCATT # Questionable array : NO Score: 8.64 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 27058-26829 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBDE010000016.1 Bacillus pumilus DW2J2 contig16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 27057 32 100.0 33 ................................ TTCGGTTTGTAACTATATTTCGCACCTCTTACA 26992 32 96.9 34 ................A............... CAAACTGATCTATCTTACGAGCATAAACAGTTTT 26926 32 93.8 34 ...A.......T.................... TGGAATCTCAATAAGCACGCTACGGTGGTATTTT 26860 32 87.5 0 .....................C.AT..T.... | ========== ====== ====== ====== ================================ ================================== ================== 4 32 94.5 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : AATTAGGGCGAAAATCGCAGTCACACTCTACATGAGTGTGTGGATTAAAATTTGTGTCTGTTTTTTGGTTAACTTCTCACCAGGAGTCGTGCTCTACATGAGTGCTTAGCTATTCTTGGTTTTAATAAGAGAAAACAAAAGCATTTATGTTTGATTCGAAAATTATTAGTGGAGTAACTATACTGATTAAAGTTTACTTTTCTTCAGAGATTGGGAGAAGAGTAGTCATTTTAGTTAATAAAGAAAATTGAAGACAATAAAATGAATTAGAATAGCTCTCCTCGGATATGTTAGAAGAACATTAAATCAAGATTAATGAATTAAAAACTTGGTGCGAATGTGAGGTGAACATAAAATCCCTGGGACATTCGCACCTATTCATTCGACACAAATGAGAAAAAATGTATATTTCATGAAGGGGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTGACTATCATTTCCTAAAAAATGTTACAATTAGGGCGAAAATCGCA # Right flank : GATTGTCTCTTAAACTGGTATGGCCACCTCAAATCCATCTTCTTACAACATCCTCTTTCAAATAGCCATCAAATATACTGTTCATTTGTATAGTGAAAACATGACTCTTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTTATTTAGATTCAAATTTTATCCATTCGTAATGAATGATGAAGGAGGAATTGGTTTGGGTGAAACGAAGCAAACCGGTAAAGTTGAGCAGCTGATCTTAGAAAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAATCATGGCGGACTGACAGGAGATTCTAGAGAAGTGATGTGGATGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGATGGAAATCATTCTAACGAAGTCGATATTGCCGTTTTTGATGAGCAGTA # Questionable array : NO Score: 6.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.73, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 28032-27869 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBDE010000016.1 Bacillus pumilus DW2J2 contig16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 28031 32 100.0 32 ................................ GCGATAATGGCTTTTTTCGACCATTTTTCTGT 27967 32 100.0 35 ................................ ATTTCATTTTCAAGCTTCACCCAATGGCAGCCGCG 27900 32 87.5 0 ...................TA........GG. | ========== ====== ====== ====== ================================ =================================== ================== 3 32 95.8 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : AGCAATAGTTTTTAATTAAATAGGATTAATAAAAATTTGGTGCAAATGTGAGGTGAACATAAAAACCCCGGGACATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTTTATTGTTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTCGGCTATCATTCCCTAAAAAATGTTATAATTAGGGTAGAAATCGC # Right flank : AGCTTGAAAGAAATGTTGACAGTTGCGCTTGATTTAGGGGTGAAAAATATGACTCTGGCTCAGTAGTCATGTTTTTAAATGAATTCAAAACTGTTGATGAAATAATGAATAAGTACCTTTAGAGCAATAGTATTTAATTAAATAGGAATAAGAAAAATTTGGTGCGAATGTGAGGTGAACATAAAATCCTCGGGACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCTATATAGAAAATTGAGGATTTTGGCTATCATCCCCTAAAAAATGTTACAATTAGGGCGAAAATCGCAGTCACACTCTACATGAGTGTGTGGATTAAAATTTGTGTCTGTTTTTTGGTTAACTTCTCACCAGGAGTCGTGCTCTACATGAGTGCTTAGCTATTCTTGGTTTTAATAAGAGAAAACAAAAGCATTTATGTTTGATTCGAAAATTATTAGTGGAGTAACTATACTGATTA # Questionable array : NO Score: 8.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //