Array 1 30537-27787 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010900.1 Moraxella catarrhalis strain MC5 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30536 28 100.0 32 ............................ TTGTCCTTATCTGATTACTGCTGGCATCTATT 30476 28 100.0 32 ............................ TGAGTATTTTTTCATCATTCTTCAATCTCCGT 30416 28 100.0 32 ............................ TTCAAAATAAAAGTTGCCCTTGCCACGCTCAA 30356 28 100.0 32 ............................ TGATGATCTGATGTGGAAAACAATGGATAACT 30296 28 100.0 32 ............................ AGCCAACCATAAAACTCAATCAACCAACTACA 30236 28 100.0 32 ............................ GTTTTTTCACCAATGCCAAACATTGCTTTAAG 30176 28 100.0 32 ............................ AAAGGTACAGGCGGTAACGCTGGAAAAAAATT 30116 28 100.0 32 ............................ ACCAGCTCAACCTGCATTGGGCTTCGCTTGAT 30056 28 100.0 32 ............................ TTTTGTCTTGCCGTCTATATGTATAATTATAT 29996 28 100.0 32 ............................ CTGCATACACACCTGTGATTTCAATGCTGTTT 29936 28 100.0 32 ............................ TAAGTGCTGAATTAGAGCGTTATGCGTTAAAA 29876 28 100.0 32 ............................ TGTGTGATTGTCTGTTTAACACACCAGTGATA 29816 28 100.0 32 ............................ AATTCGCCCGTTTGGAGTGTAAAATTGCTTTC 29756 28 100.0 33 ............................ GCTTACAGAGCTTTCAACAGTATTAATCCGTCT 29695 28 100.0 32 ............................ TCTGTAAGCGGTAATACTTCAAGTATTAATAC 29635 28 100.0 33 ............................ AATTTCACCGAGATAGAGGTTAGCCCTGATGGA 29574 28 100.0 32 ............................ CAAGGCTTTGGCGGTATGCTGTGGCAGTACAC 29514 28 100.0 32 ............................ AAGGTTATCAGCGGTCGCACCGCATTGACTTG 29454 28 100.0 32 ............................ ATCACCAATTGGCAATGAAAACCCATTTTTCT 29394 28 100.0 32 ............................ GTAATCAGAAGGCGGTGGTCTGCCCCCTCCAT 29334 28 100.0 32 ............................ AGTTTACGAGCGTATTCAAGAGCTTTCTAAGC 29274 28 96.4 32 ...T........................ TTTCATGACCTGCGTAGAACTGCACGCACCAA 29214 28 100.0 32 ............................ ATAGCCCGCTAAAGTCGTTGGCTTATTGGTAA 29154 28 100.0 32 ............................ AATGCTGATACTACCGCCTCGGATGTTGGGGG 29094 28 100.0 32 ............................ CAGTCTTGATATCGAACGGTACAGCATATCGC 29034 28 100.0 32 ............................ ATAGCCCGCTAAAGTCGTTGGCTTATTGGTAA 28974 28 100.0 32 ............................ TGTTCTGATGCGTCTTGACAGCGCTTGCTCTT 28914 28 100.0 32 ............................ ACACAGACATGCGATTGGTGATATTACTAATT 28854 28 100.0 32 ............................ CATACTTTACGGTGAGCGAGAAATTGGTGGTT 28794 28 100.0 32 ............................ TTAAAATCTACGCCATCCAAATGCTCAATGAA 28734 28 100.0 32 ............................ ACGCTCTAGCTTGATCTTATCAATGCGACTTT 28674 28 100.0 32 ............................ ACGCTCTAGCTTGATCTTATCAATGCGACTTT 28614 28 100.0 0 ............................ - Deletion [28587] 28586 20 71.4 32 --------.................... TGTCCAATCGCTTGTATTGCCTAGCTTATCCA 28534 28 100.0 32 ............................ GCTGATGTTGCTTTCAATCGTGCCAATTTTGC 28474 28 100.0 32 ............................ ACAGGGAGATTATCGCAAAAATACAGCCAAAT 28414 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 28354 28 100.0 32 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGT 28294 28 100.0 32 ............................ GTGCTGAATGTGAAAGCATTGCATGGTCGGCT 28234 28 100.0 32 ............................ ATCTTTGCACATAGAGACCAAAACCTTATCAA 28174 28 100.0 32 ............................ AGTATTTGTATTGATTGATGGTGATTGAGTGC 28114 28 96.4 32 ...................A........ TCTCCAGTTGGCAACGAAAATCCATTTTTCTC 28054 28 100.0 32 ............................ GCAATGAAACACGCACGCTGACAGACGCTAAC 27994 28 100.0 32 ............................ ATGCCTGACACCACACCGCCTGACTGCACTTT 27934 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATT 27874 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 27814 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 47 28 99.1 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTACAAGATACGCCCATCTTTTTGCATGACTCAGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTTAGGTCGGCAGGTTTGAGCGTACTCATGATGACACAAATCCATGTTTAATAATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACTGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //