Array 1 19121-19475 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTMS01000021.1 Bacteroides sp. AF15-14LB AF15-14LB.Scaf21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 19121 47 100.0 30 ............................................... TTGATAATATTCTTAATACAGAGGACGAAT 19198 47 100.0 30 ............................................... TCTCCGCCTTGTAGTAACTGAAACCCTGCT 19275 47 100.0 30 ............................................... CATGTGAATCTGCTACCGACATTACCGAGG 19352 47 100.0 30 ............................................... GAACAACAGTCTGAAGGCTGTATTGGAATC 19429 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 5 47 100.0 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCTGTATGGCAGGGCCTGCTTTCCATATTTCGTCCAGAAACACGACATCGGCTGTGGGCAGATAGCCGTCGATGGCACGTTCATACTTGTCGGATTCTTTCAGTCGGCTAATGCTGACAGGACCGAAAATCTCGTCGGGCGTAGAGAAGCGGGACATCAGGTATTCAAAGGCACGGGCATCTGTAAAAGCCGACTTTAGCCGCCTGGCTACCATTGACTTGGCTACTCCCGGAGGTCCCAGGAGCAGAATGCTCTCGCCTGCCAGAGCTGCCAGCAGGGAGAGGTTTATTTCAGTTTCTTTTTCGTATACTCCCCGGTTCATTTCGGAAAGGAGGAGACGAATGCGTTGGGTTATTTCCACAATATGATTTATTTATAGTCAGTACTCATGTATAAAGAAAAGCGTGTAAAGATACCAAATAGTAGGGAAATCAGAGAGATTCTTATTAAGATTCACTATCTTTGGAAAACTAATACACACACAGACACGCACACACAC # Right flank : CACACTTATCCCGTCCTTTGTGATGCAGTCGTTGTGATTTGCTTTCATTTCACTATATTTGTTGTAATCTGAAGTATCTTATTTGATTATCAACGCTTTGTAGAAAACTCGCATGAGAACGGGCAACGGATAAGAAAATTCCAAGCTGTTTAGAATCACTATATTCCTCATGCTTTCAAATAACTCTTTTTTCTTGATGCAAAGGTAGCATTTTTTCGTGATTGCCGGTAATTTTCGGGCATAAAATATCACGGTCATTTCAAGAAACATATACAGCGGACATGACAGCCATACCGTAGCCGAATCCCCGTAACTCACAGGCAAAGGTAACCCGTGTCCTGCTCGTACAAGCAAGGTCAAGCCCTCCGGGTGTCGTGGAAAAATCATCCTCGCCCGGAGGGCTTGCGGTATTTTTCCCGCCAACCTTGCATGTACGGGACACGACCTTTTATGGCCTGTAGTTACGGGAACTCCGGCCCCGAAAAGCCGGATCACTAAAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 6206-7174 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTMS01000008.1 Bacteroides sp. AF15-14LB AF15-14LB.Scaf8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 6206 47 100.0 30 ............................................... AGCCTCGCAGATAATCCACACTGTTGGTTA 6283 47 100.0 30 ............................................... CGCCAAGGGAAAGCATCTTGTTATCAACGA 6360 47 100.0 30 ............................................... GCTTGGCATATTCTTCCGGATTCGCAGATT 6437 47 100.0 30 ............................................... GGCTACCGCTGATGTACCCGAAGAGTTTGC 6514 47 100.0 30 ............................................... TTGTTGCAGACACGTGATAACAGCGTAGCA 6591 47 100.0 30 ............................................... CGATGCAAGCCAAAGAATTGGAAAACGATA 6668 47 100.0 30 ............................................... TGATTTAATTTTCAGAGAAACGCTGACCGA 6745 47 100.0 29 ............................................... GCCGATAGCCATTGTTTCGCCTGCTGCCT 6821 47 100.0 30 ............................................... CGTGATTGACGGTAGAAAACAGTACATCAC 6898 47 100.0 30 ............................................... CTTTGCAAACGGATGTTTGGTTTAAATATT 6975 47 100.0 29 ............................................... ATATCCACATACTGTACATCAGTCATAGC 7051 47 100.0 30 ............................................... GGGTAAACCGTTTACCTTTGCTTTGAGATA 7128 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 13 47 100.0 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Left flank : ATCGGCATCCGCCTCGCTCTTTTTGAGGTAGAACGACACCTTTACATTCGCTTGTTCCATAACCTTTTACTTTGTTTGCAAAATTACCGGATATCGAGCAAATGAACGGCATGACGAATATAGCGGAATATGGAAAGAAGCTCCATGCGTAACATTCAGAACCCGTATTTTTTCCCTTTAGCGAAAAAAGCATTAACTTTGTACTCGCAAAATATGAGTGAAACAGCGTTCTTTACGGTGATGTCAGTGGCAGTGCATAGACCTTTTTCCAATATTGTTTTCGACCTTGAACAGGCAACGGATAAGTAGCAATTTATTTTCCTAACTCCTCCAAAACGGGGCAAAACCATATAATGGACGAATATAGGTAAAACCTACATATCTCCCTTTTATTCCAATAGTTTGCATTATTCCTGCGAAATCCATCCGTATGTGAGCGAGTTTCACTATCTTTGAACCATTGGAAACAGCAGTTTCAAAGTCTATGAAAATTCGTCTCA # Right flank : CTGACTATTCATTATAATCTAATAATCAAATGGTTAAACAATCAATTTGAATCACAAAAAGCAAACAGTTTTCCACTAAAAATCCCACCAACAAGTGGGATTTTTACTTTTAGAATAACTCCAACTGTTGCCCCGGTGTATTCACATCTTGAACTTTTTTCCCATAAAAGAGCTCAATATTACCAAATTGTTTGTCCGTAATACATATAATTCCCACCTGTCCAAACTCCGGTAAGAAAGATTTAACTCTTTTTATGTGCACATCTGCATTTTCACTGCTGGCACAATGTCGTACGTAGATGGAAAACTGAAACATAGTAAATCCATCCTTCTGCAGGTTCTTCCGGAAGTCTGCATACGCCTTCTTATCCTTCTTGGTATCAGTAGGCAAATCAAATAACACCAGTACCCACATAATGCGATATTCACTAAAACGGTCCATTACATTTCCGGATATGCTATTTTACGCAACTCTCCATTAAAACATTTATAAAGAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //