Array 1 60439-59495 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOCL01000024.1 Escherichia coli strain MOD1-EC5797 MOD1-EC5797_24_length_62049_cov_61.9391, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60438 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 60377 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 60316 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 60255 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 60194 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 60133 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 60072 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 60011 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 59950 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 59889 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 59828 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 59767 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 59706 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 59645 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 59584 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 59523 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20373-19673 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOCL01000010.1 Escherichia coli strain MOD1-EC5797 MOD1-EC5797_10_length_103084_cov_63.0241, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20372 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 20311 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 20250 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 20189 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [20163] Deletion [20149] 20147 29 96.6 32 ............................C CCCTGCGTCCTCTTTTGAATAATCGCGGCGTG 20082 27 89.7 0 ..........................-A- - Deletion [20056] 20064 26 79.3 32 ---.AAA...................... CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 20006 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 19945 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 19884 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 19823 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 19762 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 19701 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 95.2 28 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.38, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //