Array 1 178984-179499 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWY010000008.1 Erwinia amylovora strain 1611 (BCEa29) Ea_BC-29_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 178984 29 100.0 32 ............................. CCAGATGTGGACCTGAACTCTGGTAGTCACCA 179045 29 100.0 32 ............................. TTTTTGTACTGTGAGAAAACGCTGTCAGAGGA 179106 29 100.0 32 ............................. CCAGTTAGGATGTCTCTTTCATGATTTATATA 179167 29 100.0 32 ............................. CCCGAGCCCATGTGCTAGTGCCGGTAAGAAAA 179228 29 100.0 32 ............................. GCGTCCTGGCCATCGAGTGCGTATATCCATGT 179289 29 100.0 32 ............................. CAACCAGTTTCGTTAGTTGTTTCTGGGATTAA 179350 29 100.0 32 ............................. GTTGAAAATTGACCATTACAAGAAATTTAAAA 179411 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 179472 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : | # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8795-8586 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWY010000082.1 Erwinia amylovora strain 1611 (BCEa29) Ea_BC-29_contig_82, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8794 26 89.7 32 ---.......................... AGCTCGAATGCTACGCATCAGCACTGATTAAA 8736 29 100.0 32 ............................. TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 8675 29 96.6 32 .............T............... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 8614 29 82.8 0 ..........A......GA.A.....T.. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 92.3 32 GTGTTCCCCGCGTGAGCAGGGATAAACCG # Left flank : | # Right flank : CATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTCC # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-273 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWY010000116.1 Erwinia amylovora strain 1611 (BCEa29) Ea_BC-29_contig_116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 62 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 123 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 184 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 245 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : | # Right flank : CATAACGCTTCTTTTCTTTGGTTCTTCTGTCAGTGTTCCCCGCGTGAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19220-18891 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWY010000062.1 Erwinia amylovora strain 1611 (BCEa29) Ea_BC-29_contig_62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19219 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 19159 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 19099 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 19039 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 18979 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 18918 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31582-28683 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWY010000062.1 Erwinia amylovora strain 1611 (BCEa29) Ea_BC-29_contig_62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31581 29 100.0 32 ............................. GCGGCGAAGAGACCGGAGCATGGGCTGTTGAA 31520 29 100.0 32 ............................. CCCATTTCCCTGATTTTCCTGGGATTATTTCT 31459 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 31398 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 31337 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 31276 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 31215 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 31154 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 31093 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 31032 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 30971 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 30910 29 100.0 32 ............................. TACCGCCAGTGGGCCATTGCATCCGGCATGGC 30849 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 30788 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 30727 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 30666 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 30605 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 30544 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 30483 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 30421 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 30360 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 30299 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 30238 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 30177 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 30116 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 30055 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 29994 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 29933 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 29872 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 29811 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 29749 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 29688 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 29627 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 29566 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 29505 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 29444 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 29383 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 29322 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 29260 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 29199 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 29138 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 29077 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 29016 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 28955 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 28894 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 28833 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 28772 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 28711 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.4 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : | # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1255-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWY010000131.1 Erwinia amylovora strain 1611 (BCEa29) Ea_BC-29_contig_131, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1254 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 1193 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 1132 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 1071 29 96.6 32 ............N................ GGCACCGCCAATCTTCTGGCCCCAGTGATTAT NCGAGT [1054] 1004 29 100.0 32 ............................. GAGATAGCTAACATACTTAACTTATCGCCTAA 943 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 882 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 821 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 760 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 699 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 638 29 100.0 32 ............................. CCGCAGTGGTGTTGTGGTTCTTAGCAGGCCGA 577 29 100.0 32 ............................. GGTGAGTGTTTAATACTTCCCCTTTGGAGGCA 516 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 455 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 394 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 333 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 272 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 211 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 150 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 89 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.4 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : | # Right flank : C # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1341 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWY010000103.1 Erwinia amylovora strain 1611 (BCEa29) Ea_BC-29_contig_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 1 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 62 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 123 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 184 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 245 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 306 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 367 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 428 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 489 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 550 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 611 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 672 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 733 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 794 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 886 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 947 29 100.0 32 ............................. CTCAATCAGGGGACTGATTCCGCGTTAATAAC 1008 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 1069 29 100.0 32 ............................. TCGGGTATAGTTCATCTCCCATTTTCCAACTA 1130 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 1191 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 1252 29 100.0 32 ............................. GCGGGTCATCTTCAGCTGATGACGCTGATACT 1313 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================================================== ================== 22 29 100.0 34 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : | # Right flank : TAGAGGTAGATGGAACATCTATTAAAATCTTCGTGTTCCCCGCGTGAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 261-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWY010000132.1 Erwinia amylovora strain 1611 (BCEa29) Ea_BC-29_contig_132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 260 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 199 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 138 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 77 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : GAGCGGGGATAAACCGCGAACCTATGCGGCATTAGCGGATGCCGCCG # Right flank : GCCGGGCGAATGCGGGGATTGCAGGGGCAATGGGTGTTCCCCGCGTGAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //