Array 1 31255-29454 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEJS01000018.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039528 scaffold_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31254 29 100.0 32 ............................. GGACTGACGGATAAATCATATATTGAAACGGG 31193 29 100.0 32 ............................. TGCTCGGGGCATGTTTCTAAACGCCCCTCGGG 31132 29 100.0 32 ............................. GTGGTGTCCGGTCTGTCGTTCACCCCCGCAGT 31071 29 100.0 32 ............................. AGCTGGAAGCCGCAGAGAAGCGCATAGCAGAA 31010 29 100.0 32 ............................. GCATCCGCTAGCCTCACGTAAGTTAAAGTTAA 30949 29 100.0 32 ............................. GCGCGTAACGCCACGCTATCAGTCTGGAACAT 30888 29 100.0 33 ............................. GGATCGGCATGGTTATTCATTTTCACGGCTTGC 30826 29 100.0 32 ............................. CCCGATATACAGAATTATCGGGCATCCATGAG 30765 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 30704 29 100.0 32 ............................. CGTTAACTAAAACGTACAAAACAGGGAAATAA 30643 29 100.0 32 ............................. GTGGCTTGACGTGACACAGGGGCTGCCGTGGT 30582 29 100.0 32 ............................. AGTTTCCCAATCTTTCGCCACGCTGGGAAATC 30521 29 100.0 32 ............................. GAATTTTTACGGGTGATATTTTTTCTCATTGT 30460 29 100.0 32 ............................. GCGTCAACGCGGTGAACCGGCGCGCCGAGGAA 30399 29 100.0 32 ............................. GTGTTTTCTGCCGTCCACCGCGTGGATGGACA 30338 29 100.0 32 ............................. TGACGCTCGGTGATTCAGGGGCAACCATTGCG 30277 29 100.0 32 ............................. GCCAGGCCGGGATCGGTGGGGTTATCGACGAG 30216 29 96.6 32 ............................C ACGGCATCATCAACCGAGACAAGCCCCAACTC 30155 29 100.0 32 ............................. ACCGAGAACGTTCTACCTTTGATTACCTTCCC 30094 29 100.0 32 ............................. GACGCGTTAACTGGCCTGCGTGATGCTATCGA 30033 29 100.0 32 ............................. AATTATTTATCAGTCCCATAGTTGTGTCTCTT 29972 29 100.0 32 ............................. CACTCCGCGCCGCTGGCATCCATGTTATCGAA 29911 29 100.0 32 ............................. AAAATTATCGAGGATGAATTTAAAACAGGTGC 29850 29 100.0 32 ............................. ATTTGCCCCTCATCTTTCGCCCTTAAGCCGGG 29789 29 100.0 32 ............................. GTACGGAAATTGTAAGCCCCTGGATTCACAGT 29728 29 100.0 32 ............................. CTCCAGCAGTTGGGCATCAACAGGAGAAACGG 29667 29 100.0 32 ............................. GCAGCGCCGGTGTGGCACTTGCATGAATCGTT 29606 29 100.0 32 ............................. GCCGATATGGCTAAAACGGCGCTTGAGAACAG 29545 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 29483 29 86.2 0 TAA.........T................ | A [29456] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACTTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGTTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 47968-47391 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEJS01000018.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039528 scaffold_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47967 29 100.0 32 ............................. ATTATGGACGACAGCTATATGAAAACGCATTG 47906 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 47845 29 100.0 32 ............................. GCGAGATTAAAGCGGGCTAACTATTTGTGAGA 47784 29 100.0 32 ............................. TGCGCAGATTCCGAACCGCTTACGATGAAGTG 47723 29 100.0 32 ............................. TTTGCCTGGGCTGGTTCGCCGAAAACGGCGCG 47662 29 100.0 32 ............................. GCTGCTCTCTCACGGGGGTGGCCTTTTTTATT 47601 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 47540 29 100.0 32 ............................. CCGGTGCTAAGTGGGTGCGTCTGCGTGATTTT 47479 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 47418 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGTGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTATTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //