Array 1 1132195-1133142 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018218.1 Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================================================================================================================== ================== 1132195 36 100.0 30 .................................... TACATTGACTAGGTCATCCCACAACTTGGA 1132261 36 100.0 30 .................................... ACGCCAATGGCAATCACAATTACCTTCTTG 1132327 36 100.0 30 .................................... GCCACGCTATCCGCAAGGTTCGGGAATGCA 1132393 36 100.0 31 .................................... CGGAATTGCCGTTGCTGTCGACATGGGCAAA 1132460 36 100.0 30 .................................... TCTTACAAAAGCCCGAGGAGCTACCTCAGA 1132526 36 100.0 30 .................................... TCGGCATCCCTGACGCTCAAACCCTTTACC 1132592 36 100.0 30 .................................... AGATAGCGTTGACCCAGTAATTCCTGCTTT 1132658 36 100.0 30 .................................... GACCTTCGAAAAGTTGTAGTCACGGTCTTC 1132724 36 100.0 30 .................................... TTGCTGGGAAAGCCCCTAATGCCTTGATAC 1132790 36 100.0 30 .................................... TCTAGCAAGAGAGAAGTGACAGACAAGCTT 1132856 36 100.0 30 .................................... AGCTCTATTACTTTTGCTTCCGCTTACATC 1132922 36 94.4 149 T..........C........................ GTTGTGTAGGTTCAAATCCTGTACTCTCCTTGTTTTGGAATATTTCCATTCAATGTTGTCAATTTTCCCGACGTATGTTGGGGGTGGCCATCATAATGGCCTAATACTAAGACGACAATTCTACTCATTCCACGTAGGTGGGGGTGATC 1133107 36 75.0 0 ..........A..........C...G..GAC..AAG | ========== ====== ====== ====== ==================================== ===================================================================================================================================================== ================== 13 36 97.6 40 GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Left flank : CAGTGAATCTTTACTTCAAAAGTACATGACCAAATTAGCTAGTTATGTAGTTGATGAGCTAAGCGCAGATGGCAGAAACAGAATCATTACCTGCTATCGCGATTTACTAAATGCTGTTCAAGACGAGTTGCTTATGGAAGATTTGCCGCTTGAAATAAGTTTTGACACAGACTTGAAGAAACTCTTCAAATTTGGTGGTCTACACTTCAACAAGACACTCACTCGCGATCCATATGGTATAATCGAGACAGTACTTAGGATACATGACAGGTTAGATCTTAAGTCTACTGTTGTTTTTAGTAATGTAGCTCATTACTTAGATGCAGAACAGTTTAACGAAATATCCAAGCTGTGCTTAGAGCTAAAAAAGTCTATTATTTTTATCGAGTTTTGTAGCCATAAGGATCAGGTTGTATATGGTGATGCAAAATTCAGTTATATCGATGAAGACCTTGTTGATTGGTACTAGCCTTATATTAAAGCTGTGTTAAAAAATAACG # Right flank : GTGCTTTTCATGATTGAGAAGCACTTTTTTCTGTTGAACACAACAACTTAAAAAAATGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAATAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCGTGGCGCGTTAAAAGAAGCCGGCCTTGACGCCAAAGCCCTGGATGCTCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATAGCCCGGCAAATTGCTTTAAACGCCGGGATGCGGCAAGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCCCAAATGTTAATCGGTGACCTGGG # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.91, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1301618-1302112 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018218.1 Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 1301618 37 100.0 40 ..................................... CAACGTTAAAGTTGATAATCATTCTATAACTATTATCCTT 1301695 37 97.3 40 ...........G......................... CAACGTTAAAGTTGATAATCATTCTATAACTATTATCCTT 1301772 37 97.3 38 ...........G......................... TTAAAATGGCAAATCAGTAAATTCAATTCCACGAGTTA 1301847 37 100.0 41 ..................................... TATCTTCAGCAAGAGTTACTTCGCCGTACAGGACTTCATCT 1301925 37 100.0 43 ..................................... AAATTGCTCTGCCCACTCATCGAGGTCACTTCGCTTATAGCGG 1302005 37 97.3 34 ....................................A TAATGAAAGCTTGACCATCAATTACAACGCTTAC 1302076 37 86.5 0 .....C...............G........TT....A | ========== ====== ====== ====== ===================================== =========================================== ================== 7 37 96.9 40 GCTAAAAACTTATCTCCGCTAAAAGGAGACGAGAACT # Left flank : AGTAGTTTAAAGCTTCCGACTTTCATCGAAGGAGGCAAGTAATGGTTTTACTTTTGAGCTTTGACTTGCCTCGAAACACAAAAGAAGAAAGAAAAGAGGCTGCGGAGTATCGGAAAAGACTAGTGGAGCTGGGCTTTGATATGAAGCGATATAGTCTTTATGAACGAGAAGTTGAGTCATAGGAAACAAGCAAGCACTTGATCAAGACTTTGAAAGAAGAAGTTCCAGATGATGGAATGATCACCTTGTACTTGTTGCCAAATGAAGTTAACGACAAACAAATTACGATTTTAGGTAGTGAAGTGACACTGTCGACCAACACAAACCCAAAGCTCATCATAATTTAGTTGGTTGTATTGTAAAATATACGTAGTTCTCATTTAGCTGGCTATTTGTCCAATTTTCGGGCAAAAGTTAAGCCATAGTCTGATCACTTGTCCTGATTATGGACATTGAAAATGGTAGATTTTGGCGAAATATCAATGATTGTTTGGTGGTCA # Right flank : ATCAGCGACGCCATTTTCCAATTCGTATCTTGATTTAGCCTCATATTTAGTTATGGGCGGGTATTACAGCTCAAAGACCGACTTTATTAGGCAGCAGATTAAATGGTTTGATGACTATCATAATCCAGTTATTACTGACAATTATGGCAATATTTCACGATTTGCCTTTGGGGATCCTGATTTAACGGTCAGTCATGAGTTTTTCAATATTTCAGCCATTACGCGCTGGGATCTAGACATGATTGATGACGCTTACGAGTCGATGCTTATCAACGAGTGGATGTGCTCCAAAGGATTCAAGATTGTTAAACTTGCTAACAAGACGGGATAAAGGAGAATTTGGACAAATCCACCCAATTTTAATCTTTTACCAGTATAATAAGGTATATGAGCATCTAATTAAGATGATTCAGCCAGTACGGCTTAATTTGCCGATTCATACCGTTAACGGCCATTCTAAGGATACAGAGCAAAAAAAGCATGATGAAAGCGCACACTTA # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAAAAACTTATCTCCGCTAAAAGGAGACGAGAACT # Alternate repeat : GCTAAAAACTTGTCTCCGCTAAAAGGAGACGAGAACT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //