Array 1 7732-5019 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYD01000068.1 Cronobacter sakazakii strain MOD1-comp54a csakComp54_contig_68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7731 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 7670 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 7609 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 7548 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 7487 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 7426 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 7365 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 7304 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 7243 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 7182 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 7121 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 7060 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 6999 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 6938 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 6877 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 6816 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 6755 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 6694 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 6633 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 6572 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 6511 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 6450 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 6389 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 6328 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 6267 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 6206 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 6145 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 6084 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 6023 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 5962 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 5901 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 5840 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 5779 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 5718 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 5657 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 5596 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 5535 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 5474 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 5413 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 5352 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 5291 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 5230 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 5169 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 5108 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 5047 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : AACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15163-15014 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYD01000024.1 Cronobacter sakazakii strain MOD1-comp54a csakComp54_contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15162 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 15102 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 15041 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : TCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCGA # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 53008-52002 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYD01000060.1 Cronobacter sakazakii strain MOD1-comp54a csakComp54_contig_60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 53007 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 52946 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 52885 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 52824 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 52763 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 52702 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 52641 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 52580 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 52519 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 52458 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 52397 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 52336 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 52275 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 52214 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 52152 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 52091 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 52030 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.2 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : ACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //