Array 1 3985886-3982498 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024618.1 Shewanella carassii strain TUM17387 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3985885 28 100.0 32 ............................ AGTCTCTGTAAAGCTCTTTTGAACCATCATCC 3985825 28 100.0 32 ............................ TCGTATTTCTCATTGTGTCGCGCCGCTCTGGC 3985765 28 100.0 32 ............................ GCGCTGGCAGTCGCCTACGTAATGAGGGGCAA 3985705 28 100.0 32 ............................ GAAGGGCGCGAGCTGTTCGAGTTCTGGAGCGC 3985645 28 100.0 32 ............................ ATCATCGTCCTCGATGATTTCCATGAATCTGA 3985585 28 100.0 32 ............................ ATCTGGAGGCGGTCAAATGCCGATTGATTGGC 3985525 28 100.0 32 ............................ ACCAGACGTACCAGACTCACGAATCAGCATCA 3985465 28 100.0 32 ............................ GAATTAGCCGCATACGTTGCGACTAACACTCC 3985405 28 100.0 32 ............................ ACGAGAAGGAGCAGAACGGCGATAATTGCAAT 3985345 28 100.0 32 ............................ TCCATCCATTTCTTTTTCTTGGTTACATTTAG 3985285 28 100.0 32 ............................ ACCTTCAAGCAAAACAAGGTGGTTGTCGATAT 3985225 28 100.0 32 ............................ ACCACAGCGCCTGCTCATCTGCTGTGTGAACG 3985165 28 100.0 32 ............................ TAAAAACGGATACAAGAGGCTGCCAATAAATT 3985105 28 100.0 32 ............................ GTTACGGGTACTTGCTCCGTTACGGGTTCAGT 3985045 28 100.0 32 ............................ ATACGGAGGATTGCACCAAACTCGACCGAACC 3984985 28 100.0 32 ............................ CTCAGCAATGAACACTCCTGATACACCATTGC 3984925 28 100.0 32 ............................ AGTACTTATCCTCGTACTGTTTGCGGTCTTCG 3984865 28 100.0 32 ............................ GTCCGAGTGTTTTGTCCTCTCTATAATTTCCT 3984805 28 100.0 32 ............................ TTCCCAATGCGCCCTGTTTCCAGGGGCACTGT 3984745 28 100.0 32 ............................ AGCTGGCCCCAACGCCAATGCTTGAAGCTATC 3984685 28 100.0 32 ............................ GCTTGCGCTGTGAATTGGGCAATTTTGAGATT 3984625 28 100.0 32 ............................ TTCAAGATGTACCAGAGCAGCGGATTTAGAGA 3984565 28 100.0 32 ............................ GACACAGGGGAAATTCTCAACCGGCAGCAAAC 3984505 28 100.0 32 ............................ AGTCCAGAAACTTGGCCAGCAGCTCCGGCCCC 3984445 28 100.0 32 ............................ ATCGTAAGAAGCGGCGGTAAGCCACCCGTAAT 3984385 28 100.0 32 ............................ ATGGCGCGAAGTGTGGTACCTGCCTGCGAACT 3984325 28 100.0 32 ............................ GTCAGCGTCAAACTCTCCCGCTCTCAACTCAA 3984265 28 100.0 32 ............................ AACATGCAAATCAACCAAATCCACCTGAACTC 3984205 28 100.0 32 ............................ TGAACTCAACTATCCGGAAAGGCCAGATATTT 3984145 28 100.0 32 ............................ GTTTTCGTCTTTGGGGTGGCCGCCAGTGATGG 3984085 28 100.0 32 ............................ TTTGTCAAACGCTGCCGGGTTTAAAGAAGGCA 3984025 28 100.0 32 ............................ TCCCCACCCAAGAAACGCTTGATAGCCCTTAG 3983965 28 100.0 32 ............................ GTTTGGGGGCGGAAACGTCTTTTAGTGCCTCA 3983905 28 100.0 32 ............................ GCCAGCTCCGCCAGCAAAGCAAGGAAACGACC 3983845 28 100.0 32 ............................ TTGCAGTGACTCCTTTAAAACCACCTCATTAA 3983785 28 100.0 32 ............................ TATCGGTGTCGGTCTGGCGTTGGCATTTTGCC 3983725 28 100.0 32 ............................ AATAAAGGTCACGCAGTACCACGCTGACAATT 3983665 28 100.0 32 ............................ ACCTATCAAAATCATGGCAATAGAAATACCTT 3983605 28 100.0 32 ............................ TAAGCGGGGCTTTTTTCGTTGTGGCCTGAGCC 3983545 28 100.0 32 ............................ AGGCTACCGGGTTCTGGCTCAACGAAGTCAAG 3983485 28 100.0 32 ............................ ATACGATTACATCAAAGAGTATGTATGGACGA 3983425 28 100.0 32 ............................ CTACGCTTACGTCTGTGCGCTTGATGCTTATC 3983365 28 100.0 32 ............................ ATTACGTACTGATTCAAGTCCTGCAGCATAGT 3983305 28 100.0 32 ............................ TAAGTCCCTCAGCCTTTTCTCTAGGTGTTTCT 3983245 28 96.4 32 ..........A................. ATCAGCGGTTCCAACTCATAGCGTCCGACAAT 3983185 28 100.0 32 ............................ TTAACTTCTGGGCCTGTCGCTTGTTGCCATTC 3983125 28 100.0 32 ............................ TGATATAGGCCCGGCTCCGGGCGTTTCTCGGG 3983065 28 100.0 32 ............................ TGTCATTCAGAGTAACGACACAGGTTATAATT 3983005 28 100.0 32 ............................ TGTTCAGGTTATCCAGGGGCGCGGCGTATTCA 3982945 28 100.0 32 ............................ GCAGATCTCCCCCAGGAACACTGCAGCAGAAA 3982885 28 96.4 32 ..........A................. TCAAGGCGATGAAGAATATGATGAATCAAAAA 3982825 28 100.0 32 ............................ TGACAGCTCCATGTTACACCGTCTATTGCATT 3982765 28 100.0 32 ............................ TGCCAATGAGTAACGACGCAGACGAAGCCCAG 3982705 28 100.0 32 ............................ TCAGCAGGGCCGGGATGATTAAGCCGAACTTG 3982645 28 100.0 32 ............................ GAGAAGATTAACTGGTTCTTTGAAACCGTGGA 3982585 28 100.0 32 ............................ GAAGCACGGGCATATTGTGAAGTTTACCAACC 3982525 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 57 28 99.9 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAGCAGGTGAAATCGCCTGATCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCTGTAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGCAAAAAGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCCGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGCATCAAAGGGTGAGCTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTGTTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGATTTATTCTATT # Right flank : GTTCTTCTGGTGATGACCTTTCCCCCGAATTTATCACTCGGCCCCAGCAATATCCGAACGTCCTGCATTTATGGGGCTGAAGAGGCCGAAACTGAGGTGATTTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCTGCTCTGGGTGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCTATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACACCCTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTCGCTAACCGCGACTCTTTGGCTACAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCCAGAAGGCAAACACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //