Array 1 77829-76293 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJNY010000035.1 Microcoleus sp. FACHB-61 contig35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================================================================================================================================== ================== 77828 37 94.6 37 ........T.......C.................... GTGAAGGGCGATCGGCTGCCACTAGACAACAACTAGA 77754 37 100.0 42 ..................................... GCGGATCGATTCCAACCCGACCCGCCAATTAAAAAGGCGCAA 77675 37 97.3 34 ...A................................. GGTTTGCCCGATCGCCTTCCCTTGCGAATCTTGA 77604 37 94.6 34 ........T..........T................. TAAATCTCACTATCGGGACCCAAAACCTCATAAG 77533 37 100.0 36 ..................................... GCCCTAATGCCGCATAACTGCCCTCTGGTAGCTTCC 77460 37 97.3 35 ..................................C.. CCGCTAGTGCGATCGAGCAATGCAAGCGGCCGCGC 77388 37 100.0 36 ..................................... TTCGGCTCAACAAATTAATACTTTTGTCGCCCTTCT 77315 37 100.0 36 ..................................... AGTATTTTAATCACTGCCATTGATGAAGCCTCGGAG 77242 37 100.0 38 ..................................... CCCTAGAGTTGCGAATAGTTCACTCCCGTTGGCTCCAT 77167 37 100.0 25 ..................................... AATGTAGGAAGCTTAAACTCCTTGA Deletion [77106] 77105 37 100.0 38 ..................................... CGAGAATAGGTAAAACCTTTTGCGGGAATGCCTGAAAA 77030 37 97.3 164 ....................................G GGAGCATCCCTATTTTGCAAATATATCCGTAGGGGCGAAGCATTCCGGTAGTAAATCTCTGCTTTTAACTCATAAATTATCTGCCGGAATGCTTCGCCCCTGCAAAATAGGGATGCTCCCGATTGAAACTATATGCACCAATTAGCAGGCTACAAAGTCAGTAG 76829 37 100.0 35 ..................................... CCAGAAGCGGGAATGGGATAGGCAGTCTGCTCTGG 76757 37 100.0 35 ..................................... CAGAGGGCATCTGGATGGAGTACATCGTCACTATC 76685 37 100.0 33 ..................................... AAGGTTGCCCAGCTACCGGGCCCGGAGAAGGGC 76615 37 100.0 33 ..................................... GAGGGTTTATGGAATTCTTTTGGCGGCATTTTG 76545 37 97.3 35 ........T............................ ACGCCAGCAGTTACGCTCAGCGTTTAGCGTCTCGT 76473 37 100.0 34 ..................................... AATTTCCCAATCCCAGAACCCTTAGATTTTCCCG 76402 37 97.3 36 ....................T................ AAAGATTTTACACGCACCATCCAAAATAAATCAATC 76329 37 91.9 0 ...........A.....C......T............ | ========== ====== ====== ====== ===================================== ==================================================================================================================================================================== ================== 20 37 98.4 42 GTTGCAATCAACCTAAATCCCTATCAGGGATTGAAAC # Left flank : TCGGTACGGACTCAACTAGAAGCGGATGCCAGCCGTTTTATTCACAATCCTGATAAGGTGCGATATGATGCCGAGAAAAAGACGCTTTATTTGAGCAAGATTTTTAAGTGGTACGGCGAGGATTTTGTAAAGGCGGCGGGTTCGGTGGCTGAGTATGTGGGTGGTTATTTGGGGCCGGAGGCGGCTGTGGGTGATGGATGGGCGATCGTTTTTTTGCCTTACGACTGGAATTTGAATCGGGTTGAAGGATAAAATTTGCGCCTATGGGTAGGTGTTTTTTTGAGGGTGGAATTTTTTTCGGCTGTATCAGTTGCGTAGTATGGGTTTAAGGCACTTTATGAAAAATCCGACGCAAATGCTGTATTGCTTGCTGTGAAAGGTTTTGAGGTTTGTTGAAATTTTTGCCTCTTGACAGGTCGGTATTGAGATGGTAGTTTGGATATCTACAGACGCAAACGAACCTTGAAAACTAAATACAGTAAGAGTTTCAGAAACCAACT # Right flank : TAACATCAAAACCCAAAAAAGACTTTTGTGCAAGTTCAGCAGGTGTCCCAGCATCCATCGATAATCGACCCACAAGTGACATATTAAAAACTATCACAGTTCAAATCCTCTGGAATATTAAAAATGATTTCAGATAAATTTCGACGCGAGTTGCGAGATCAAGCCAAACTCTGGCAAGCAGAAGGACTCATCGACACTTCATTCTACCAACAACTTTCGGAACGCTACCAATTCAACACACTCGAAACCGCCTCCCGCAACCGATTCCTCAGCATTCTCATCAGTCTCGGCGGCATTCTCCTCGGTATAGGAGTCATCACCTTTGTAGCCGCAAACTGGCAAGTTTGGTCGCGCGAAGTGAGAGTTGCACTGCTGCTAAGTCTTTTCGTAGCAGTCAATGCAGCAGGTTTCTATCTGTGGCGAATTCCCCCATCCCGAAGCCAAAACTCCCATCCAGATATGCCCGCAACAAAAGGGCGAAACAAACTCCTAGGTGAAGG # Questionable array : NO Score: 8.52 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:-0.65, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATCAACCTAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 8804-9645 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJNY010000058.1 Microcoleus sp. FACHB-61 contig58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 8804 36 94.4 40 A.....................C............. ACCCACCCAAAGTCTACCATCTGTGGAAGGCCCCAGTACA 8880 36 100.0 37 .................................... ACAGTCTGTTACTAAGTCATAAACCTCTCTATACAAA 8953 36 100.0 37 .................................... ACGTGATAGAATTGGGTATTGTAGTTCTCCATTACCT 9026 36 97.2 35 .....C.............................. ACGTGATAACCCTGTGTACACGGAAGCCTTCTGTA 9097 36 100.0 39 .................................... CCTTGAGCAAACTTAATAATATCTGCTTCTCCACATAAC 9172 36 94.4 37 C.....................G............. CCGTTGCTGCTGCCCTTTGGTGCTGGCATATCTTTTT 9245 35 97.2 36 ................................-... TATACCGTTGTTTCCTTCAACCAAGATGTTGGTCTT 9316 36 100.0 37 .................................... TCAATTATCACTCCGGATGTGGCAAAATGACCGATGA 9389 36 97.2 39 ..................T................. TGGCAAGCTGTAATCTCGGTACAGAATTGTTGCCAATGT 9464 36 97.2 38 ...C................................ TCACATCTGCCTGAGTTAGAGGATTTAGCGCACTTAGA 9538 36 91.7 36 .........T.T..G..................... TGGAAGTTGTCGGTTGTCCAATCTTCAACAGCTCCA 9610 36 83.3 0 ..T......T.........A...........C.T.T | ========== ====== ====== ====== ==================================== ======================================== ================== 12 36 96.1 37 GTCGCAATTCACTTTTCCCCGCAAGGGGATTGAAAC # Left flank : CTTACTCCCAAATAATCATATTAATTGTAGGGAATCCGTTTTTATGTTTTGTCATCGCGGGCGATCGGGCAGGTAGAAACTTGGGGTTCTGGCCCGCCGGTGACTCAACCGCCAACTTCGGTAATTGTCTAAAGTATTTTTTTTGACACTTGACCGCTAGGGAAATCTAGGTTACTATTACGCCATTGCTAGATTCTAGTTGTAAATCCACACAAGCCAATACAAACTTGTCGTGTTAATTACTATCTAAATCAACAGCACCAGTACCTAGAAAATTAAATAGATTAGAGCAGTGTTTCAGCGCTTCAATCATTTAGCTGTGCGATCGCCTCGCTAAATGGCTGAAACACCGATTATCTCGTATAGGCGGCCGTTTACTTGTCCCGTAAGGGTTTCAGCGATTTTTGAGAGCTGATTTTCGGCTCTAAGTGAGCTGAGCATCAGAGGCGGTCGGAAATGCCTTCTGAAGCCTTTACTGGGTAAGGTTTTCAAAACGAGGG # Right flank : TCAATTCCGGCTGCGCCGACATGATATGGAGGAGACGGCAGTGCCGTTTCCCTACCCCGATCGATTGTAGGGACTAAGGCACTGCCGTGTCCTCCGTTTGTATCTCGCTCTAGGAACTCTTGCACCAAAAAATTCATCTCGCACACTGCACCCTTGTCCATTCCCTGTGGTACAATTGCAGATTGTGACATCGTACAAAAAAAACTAAAATCAATTCATGGCTCTTACACAACAGCGCAAACAAGAAATCATGGGCGACTTCCAAACCCATGAAACCGATACCGGCTCAGCAGATGTCCAAGTCGCCATGCTGACCGATCGCATCACAAAACTCAGCGCCCACCTGAAAATCAACCAAAAAGACTTCGCCTCCCGGCGCGGTTTGATGATGATGATCAGCCGCCGCAAGCGCCTGCTAGCATACATCCAAAAGGAAAATGTCGATCGCTACAAAGCATTGATTGCCCGTCTAGGCATTCGCGGCTAAACACCAAAGCCAA # Questionable array : NO Score: 8.60 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATTCACTTTTCCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 238068-239156 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJNY010000063.1 Microcoleus sp. FACHB-61 contig63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================================================== ================== 238068 36 100.0 40 .................................... GCCGCAAGCTAGAACGTCGAGTTTCATATAAGGAATCTCA 238144 36 100.0 31 .................................... CATTGTCCACCATGAGATATAAACAAAGTGG 238211 36 100.0 39 .................................... ATTGTGCAAAGGGAAAAGCAGAGACTAAGCCAGCTGAAG 238286 36 100.0 39 .................................... TAGGGAGGGGAGTAATCGGATTACTCAAGAATTTATTAA 238361 36 100.0 40 .................................... ACCTTTTCAACCCCCTTTATAAAACCTTTTTGCTGATCTT 238437 36 100.0 41 .................................... AATCCTTGACCATCTACTTCTAATACAAACACGTCGGCCCC 238514 36 100.0 35 .................................... CTATAACTAAGCTATTAGCTAAGTCTAGAGAGAAG 238585 36 100.0 36 .................................... GTTGGTGTCGGCATTATATCCATCGTTGGACATAAA 238657 36 100.0 41 .................................... GTTTACTGGATGATTTCCAGGAGGAGTCACCTGTCCGCCGC 238734 36 94.4 33 .....................C.........A.... GTTTAGCTTAGTCGTTGAAAGCTTTCAAAATCA 238803 36 97.2 36 .....................C.............. ACCAACGTCCTGATACAAATACTTTATTCTCATAGA 238875 36 97.2 36 .....................C.............. GTTTGTTGTTTACCACTCTTATCCACATAACGTTTA 238947 36 100.0 138 .................................... TACATCTGCTGGAAATTTTTCCATTTCTTTGCAACGCCAGAATTTATGCACTCCGACCAAAGAAACCGGGTTTTTTACCGAATCTGTGGACTACAACCAAATATTTTCGTAAAAAACCCGGTTTCTGGGCCCCTACTT 239121 36 83.3 0 AG..T...............C............T.T | ========== ====== ====== ====== ==================================== ========================================================================================================================================== ================== 14 36 98.0 45 GTCTCCTTTACCACTTCCCCGAGAGGGGATTGAAAC # Left flank : AGTCGATCGCCCCGACAACTCAAAAAGTCAAACACTCCTAGACTCACGGGCCCCGAGAAACCGGGTTTTTTCCTCAGAAGACGCCATGCAGCCGACGGAAACCGCAAAAACCAGGTTTCTGGGATTTTGTCGATCGCCCCGACAACTCAAAAAAGGATCTCGTCGGATTTGACTCTCATTCTTGTTGACAAGTTGCAGGTTAAGGTGTATGGTGAGTTTGCGAGTTGCAAAGCTCGATCGCTCCAGAACGTTGAAAATTGCATAGTTTTTTTTTGTATCTGCGGCTAGTTTCAGTGTCGCAGATGGGCAATCGACGCACCTCGGGCGATCGGCAAAACCCTGATTTTCTCGTTGGGGTGCGTCGATTACTCTGATACCAAGGGTTACGGCTTGCAAGCAACTGAGCTTATTGCAGGTTTTAGGGTCTTATTGACAGGTAAAAAATGGTGCGTCGATTTGAGGCTTGAAACCCTTTCTGGGTAAGGCTCCCTGGCCGAAGA # Right flank : TCAAATCCCGTGGCATCGGAATTAATCTTACCCACAGTCATGAGACGGCAGTACCTTTCGTGGTGTCAACTTAAGGTAAAACCGATAGTCCGTCAGGGGTTGAAACCCCTGCCTCAAAGTGAAAGTCCTCTAAAAGAGGACTAATGAGTTCTTCAGTCCTCTTTGAGAGGACTTTAGCTATGAGACAGAGAATTCATATCAATTCCGGTTGCACCGAAATGATATAGAGGACACGGCATTGCCGTGTCCCTACCGAAAATAATATTGTAGGGACACGGCACTGCCGTGTCCTAATTTTGGCTAATAATTCCGATGCTACCGGAAACGATATCATTCCCTGGCGGACTGCCGGGTGGGAGGACTGGCGGACTAAAAGCTTAAGTTGACACCACCAAAGGCTGTACCGTTTCCCTACTCAAACCATTACCCCGAATTGCATTTGCCTTCTTCCTTCTGCCATACAAAAAAAACCCGGCCTCTCAAAGAAACCGGGTTTTTTA # Questionable array : NO Score: 8.41 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.74, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCTTTACCACTTCCCCGAGAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 1 82971-76895 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJNY010000067.1 Microcoleus sp. FACHB-61 contig67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================================== ================== 82970 37 100.0 37 ..................................... CCGATGTTGCAGAATCACCAGCGCCGCCAGATGTTGC 82896 37 100.0 38 ..................................... ACCAAAAGTACAGTTAGAGCGTCGGTCAGAGTGTATAG 82821 37 100.0 37 ..................................... AGAAAATGGGCAAGGGAGAAGGTCAAAACAGGAGTTA 82747 37 100.0 43 ..................................... CAACAAATACCATTTACCCGTTTTGCAACGCAGGGAAATATAG 82667 37 100.0 34 ..................................... GAGTAATTGGATAGGATGCAACCTGACCTCTATG 82596 37 100.0 39 ..................................... GGATAACCTTGTTAATCCTAGGCTTTTTATAAAAAACAC 82520 37 100.0 36 ..................................... ATCGTAATTAGTCATGTCTGTTGTTTGTTAGTTGAA 82447 37 100.0 36 ..................................... TAAGTTAGTTTTAACTCGTGGGAATGCCCTCTAACT 82374 37 100.0 36 ..................................... ATTTTCTGCGGCTGCAATCGCTTTTAGTGCTTCCGC 82301 37 100.0 38 ..................................... GAGTGGGGAAATTTCCCGACGTTGTGGTTTTCTGGTGA 82226 37 100.0 44 ..................................... TTGCCAACATTGGAAATTCTCTTAACTGAACGATAGCCGCCTAA 82145 37 100.0 37 ..................................... GTAAGCCATACCCTACCAGGGATTGAAACTCCGTTTA 82071 37 100.0 40 ..................................... AAATTTACTTCTTGAAAAACCTCTCGATTCCGCTCCTGAG 81994 37 100.0 33 ..................................... ATCAGCAGGCTTACTCAGCCGCCGCCAGTTTTT 81924 37 100.0 35 ..................................... GTAGAAGAGGCGCTTTTCACCGTTGCCGATCTGGA 81852 37 100.0 36 ..................................... ACAATATTACCTGCAACCGAGAACCCTCCTGCTAAG 81779 37 100.0 35 ..................................... TAAACGCGATCGGATTGGGGGGACTGGTACGCTTA 81707 37 100.0 40 ..................................... AGACCGCTAGAGCGCAAATTGATTGACGCAATGATCGGGA 81630 37 100.0 37 ..................................... GGAAAAATGGTCGAGGAATGGGGCAAAGAAGGGCAAA 81556 37 100.0 39 ..................................... TTCTGGCTCTTCTGGACTTGCTGACGAAGCAGCAATTTC 81480 37 100.0 39 ..................................... AATTTAACACCAGTCGGATCGGCTTGACTTAACTGCTGA 81404 37 100.0 40 ..................................... GAATTCCTCTGGTTCCTTCAAAGGGGGTAAAACCCCCAAT 81327 37 100.0 35 ..................................... TTGCCCTCCCCTGGAGAATTGCTAGAACGATTTGG 81255 37 100.0 37 ..................................... GTGATTCTCCAAACCCTATAACCTTCCCACCCTCAAA 81181 37 100.0 37 ..................................... GAAAAATAGCTTTTTAGTCCTAATTCTGCGAGGGCTT 81107 37 100.0 36 ..................................... AAATCCCTCTGCATAACTTCATGCAAGGCATCGCCC 81034 37 100.0 32 ..................................... GTGGAAGCCTCACACTAATATCTATTTACTAG 80965 37 100.0 33 ..................................... TAACAGGAGGAGACGATGGCTGAAAGGAGGAGA 80895 37 100.0 33 ..................................... TTTGCGTGGAATTGACTTGGTAAACGCCCAAGG 80825 37 100.0 37 ..................................... ACCTAAAGACTGCGCCGTATAATCTAAATTCAATAAA 80751 37 100.0 35 ..................................... CTAAAAAACTCGGTAGATGTGGGACTTCTCCCTAA 80679 37 100.0 37 ..................................... GAAATCCGACGGCAGAGAGTTGATCGTAATTGACCAT 80605 37 100.0 34 ..................................... GACGCTTTGCGCCGTCCACTATTGCAATCTCAAC 80534 37 100.0 40 ..................................... TTTAGAGGAACAATTTTTGAATTCTGCATTAGCAAGCTCA 80457 37 100.0 34 ..................................... CTCCGCAAAATTCTTTATTCCTTCATCTGATATT 80386 37 100.0 32 ..................................... TTGGCTGTAGCAGTATCAGTCCATTTATGCGG 80317 37 100.0 35 ..................................... ATTAAAATCAATGCTTTGGGATGTGCTTGAGCAAC 80245 37 100.0 36 ..................................... TTTGATGACGGCAGGTATATTCTCCCAAGCATCCAT 80172 37 100.0 38 ..................................... GGTGCATTTAATCGGGCCGCCAAGAGCAGGCAAGGGTA 80097 37 100.0 34 ..................................... AGCGAGTACACATCTAACGTTCAATCTGACAAAG 80026 37 100.0 34 ..................................... CAAATTTTCTCAGGCAACTGCGCGAAATTATTGG 79955 37 100.0 36 ..................................... GGGGAGTAGCAAACATAGCATTTACCCTTACATCGG 79882 37 100.0 35 ..................................... CCTGGCGATGGAACACTAAACGTGTTGCCCGGACT 79810 37 100.0 37 ..................................... AATCCCTGACGGGGTAAACCGATCGGACTACTTGAGA 79736 37 100.0 38 ..................................... CGAGTTTTGCCCTACCTTCAGCAATCTGGATAGACTCT 79661 37 100.0 40 ..................................... CCAGTCGGTAGCTTCAGGGATAAATTCTTCGGGGAAACCC 79584 37 100.0 46 ..................................... TATCCTGAAAAAGGGCTTCTAATTGAGCCAATTTTTCAGGGGTTAA 79501 37 100.0 42 ..................................... ATAAGCAAGCGCTTTGAGATGGTCAATCCGACGATAGCTGGC 79422 37 100.0 34 ..................................... TTTTGATAGCCATAATTACACCAATTTTTTAAGG 79351 37 97.3 33 ..T.................................. CTGCCACCACGCCCAGGTTCTGGGAAATCATCC 79281 37 100.0 36 ..................................... AATCACTAAAAATAAATTTAATGCCCAAACCCATGA 79208 37 100.0 34 ..................................... CCTCTTTCCATTCAATATCCACAAAATTCTTTTT 79137 37 100.0 35 ..................................... TATCGCACCAAATAGCCATACCTTCAGCATAGAGT 79065 37 100.0 32 ..................................... TTGTAAATCACATTAGGAATGATCCGACCTTC 78996 37 100.0 36 ..................................... TGTTATTCCTCGCACCTCCCGATGGACTTCGCTGTC 78923 37 100.0 42 ..................................... GTTTTATTTGAAACGGGATATGAAAACCCGCCTAATCCGCGA 78844 37 100.0 38 ..................................... GAGGAATAGGAGTTGCCGTACCAGTAGGCGGCGTATAG 78769 37 100.0 39 ..................................... CTTCGTAAAACAGCAGGCTTTAACCTATGATGCTATTAC 78693 37 100.0 37 ..................................... CTCCATAACGGCAGCAACCAATACTAGCAATTTTTGG 78619 37 100.0 38 ..................................... CCACTACTCTCGTACTTAGTGGCACGCTCCGACCTTGA 78544 37 100.0 34 ..................................... AAAGTTTCATGCTAGCCCCTAGGCTAGCCCTACT 78473 37 100.0 35 ..................................... CGTAAGGGCTATAGTTTCCCGCCCATAAAAATGCA 78401 37 100.0 36 ..................................... ACGAAGTGCGGACGGAATATTTAAAACTCAATCAGC 78328 37 100.0 37 ..................................... AGCAGCTAAAGCTAAAGCCCAGGAGCCGACACAAAAG 78254 37 100.0 47 ..................................... GCACGCGATGGTACGGGTGTCTTGGTAATGAGCCTAGATGATGTTAC 78170 37 100.0 33 ..................................... GAAAATCGGGGGCTTGGAAACTACGGATTAACT 78100 37 100.0 38 ..................................... TGCCGTAATGCTTAATTATCATTTGACCATCTTTATGA 78025 37 100.0 34 ..................................... CGGGTCACGAACCGGACACGAACCGGACACAAGC 77954 37 100.0 38 ..................................... GAAGCGCTGAGCGATATCTCGATTGAATACGGCTATGT 77879 37 100.0 34 ..................................... TTTGCCACAACTCGAAGCTTTTGGGATGCGCTAA 77808 37 100.0 41 ..................................... TTGAATACTTTCGCAGCATTCTTGCAAAGATTTTAAGTTGC 77730 37 100.0 37 ..................................... CTGGTTTTCCCAAACCATCAAAAGCAATGCAATAAAT 77656 37 100.0 33 ..................................... AGCAACAGATCGCTTTGGGCATTCATGCCAATA 77586 37 100.0 38 ..................................... GTGATGTTAACGCCGTAAGGCAATCCAGCACCGATCGC 77511 37 100.0 37 ..................................... ATAAAATCTGCCAAATCTCGCGGCTTCTTAGGCTCGC 77437 37 100.0 37 ..................................... TTACGTTACTCGCTGCCAGCCGAATACTCGATCGCTC 77363 37 100.0 42 ..................................... AATCCCGTTAAGGTGGCGGGAGTTATTTTTAAGCTTTTTCGT 77284 37 100.0 35 ..................................... ATCGATGAGTGGTCGAGTCTGTATTCCGCACTCAG 77212 37 97.3 42 ........................T............ AAGAAGTGCCGCAATTGTAGAAGCGATCGAACTGTGGATTAA 77133 37 94.6 40 ..GA................................. CTATAAGTAGCTTGTTTAACGTAGCATTCTAATGCTACCA 77056 37 97.3 88 ................A.................... TTTCGGAAGTATTCAGGAGAGAAGGAGACAGGAGGAAAGAGGGTATTCTGCTCCTGACTCCTGACTCCTGACTCCTGACTCCTTCTTC 76931 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================================================================== ================== 82 37 99.8 38 GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC # Left flank : CGGGCTTGAAGGGTGGGGCTTTGGGGGCGATTTGGGGCAGTTTTTTGGGGACTTTCGCGGGTGCTGTGTTGGGTGCGCTGGTGTCTGCGATGTTTCCGGCTGTTAGCGCTGGGGTGCCGGTGGAGTTGGGGCCTGTGGCGGGGGCGATCGTGGGGGCTGGTTTGGGGGCGATTTGGGGGGTGGTTTCGGGTACTGTTTGGGGGGCTTTGGGTAAGTGGTGATCGGGTTGATGTGTGTTTTTGGGTGGAAAATCCGTGAATGGGTAGGTGTTAAAATGGGGGTGTTAAATTTTGGAGCTACAATGTATGTGCTGCAAGGGTTTGAGGCTCTGTGTCTGAAAAAAGGATTCACGCAAAGGCGGAAAGTATTACAGGATAAGGCTTTGGGGTGAATATGAAATTTTTGGTATTGACAAGTCGAAGGCCCAAATGGTACTTTTGTTTTAGATTCACGGAACTGAACCTTGAAAACTAAATACACCAAGGCTTCTGCAACCGGCG # Right flank : GTACCGGAGCAAGCCGTTTGCGACTGCTGAGAAATTAGACACGAAAAACGGCTAAAATCGAGGCAGAGCAAGAGTGAAATGCCTTCCCCGACAGAGCCTGGGAACGAGAATTTTCTCCGCGTTCATCTGCTGTTTAAAAGTCCAAATATTAAGAAAAACTACAATTTGTGTTTGCGTCACTCAAAATACGCTAGCGTCAAAAGTATAGAATCATACCAAAATCTGAAGTTGCTCGAAATGCAATAAAAATTAACCTAGAAAAAGTCTAGAAAATGGTATAGAACAGATTGCACCAAGAGCAATGGAAAACAAGTTTTCTGTTGGAGGCAATATGAACGAAAAAGTCATTGGGGCCACGCGGAACGTTGCAATTGTTGGCCCTTATTTAAGCGGTAAAACCGCACTGCTAGAAAGTTTGCTGTCGGTGACAGGGACAATTACCCGCAAAGGAAATGTCAAAGATGGCAACACAATAGGTGATAGTTCGCCGGAAGCACGCG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATTAACCTAACTCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 43083-43229 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJNY010000007.1 Microcoleus sp. FACHB-61 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 43083 24 100.0 33 ........................ AGAGGCTAGACATCTTGATAGAAAGGGTTATAA 43140 24 100.0 42 ........................ CTTTGAGACGAATTGGTCTGAAAATTCTGACCAAGTTTCTAA 43206 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 3 24 100.0 38 CGGGCAAGATGCCCGTTCCACAAA # Left flank : CTGTTTGATTACGATGCGGTAATGTGGCTGCGGGAAAGGGTGCAACATATCCCTATTCGCCTGGTTTTTGAGTCGGCTTTGGAATTGATGAGTCTTACTCAAATCGGCGCTTTTAAGATTGGCGACAAACCGAAGGGAATGCCGAAGCCGGTTAAGTTTATTCTGGATAAGTTCAGCAATGGGCGAGAAGAAGATAAGCTGGCTGGTTACATCAGCTTTTTGAAGGTGGGGCCGAAGTTATTAAAATATGTGCCGGTGCAAAAAGTGCAGGATTTGCGAAACTGGCTGATTATTTATGGTTACTGGAATGCGGGCGGTGCGGATAATGTTGTCTCGATGTTTTGGATTATTTCCGAAAAGTATTTGGGGCTGAAGGTTGGGGAAATTCCGCCGCCTGTGGAAACTCCAAATATGGGTTTGCTGCATCCCGATTATAATGGTTATTTTGAATCGCCTCGGCAATATTTGGATTGGTATCTCGGTAATCAAATGGGTAGAAT # Right flank : AATTTGGAACCAATGGCTTCCCTAATTCCAATCCAGTAAAATCCCCTGTTGTGGGAATTTTACTTTACCGCAAGCACGTTATCACCAAGCAGCCTTATATTCCTCAATTAATCCGCTATTTTGAAGATGCGGGAATTGTGCCTTTGCCGATTTTTATCAATGGCGTTGAAGGCCATGTGGCTGTGCGGGATTGGATGACGACTGCTGATGAAACTGCGCGGCGAAAACAAGGCAATATTGAAACTCTTTCGCTTTCTAAAGATGCTGTGGAAGTAGATGCTATTGTTTCTACTATTGGCTTTCCTTTGGTTGGCGGGCCTGCTGGTTCGATGGAGGGTGGAAGGCAGGTGGAAGTTGCTAAGCGGATTTTAACTGCTAAAAATGTACCTTATTTTGTGTCGGCACCTCTGCTGATTCAGGATATCCATTCTTGGACTCGTCAGGGGATTGGGGGTTTGCAAAGTGTGGTATTGTATGCTTTGCCTGAGTTGGATGGCGCG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGGCAAGATGCCCGTTCCACAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 64827-69452 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJNY010000007.1 Microcoleus sp. FACHB-61 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================== ================== 64827 37 100.0 34 ..................................... TAAGAAAGTTCCATTTTCAGCAATAAAGTATTGT 64898 37 100.0 41 ..................................... TCGGATACCGTGCGGGGATGGAAAATCCCGCCGGGGTTCGT 64976 37 100.0 36 ..................................... AAAAGGAAGCGTGGACTTGGCAAATTCTCTTAAAAA 65049 37 100.0 40 ..................................... CCCAATAATCACGACCATTGCGTGGGGCGGAATAGCCTGA 65126 37 100.0 35 ..................................... ATTCAGCACCCCCTTGAGGTCGATCACAGCATCAT 65198 37 100.0 42 ..................................... TTTCGGTAAGCTTCGGCGATCGACTTGGCAACTATGCTCTGA 65277 37 100.0 36 ..................................... CTACGGCTTGAAGGAAGGGGATTAACATAAGCGGAC 65350 37 100.0 42 ..................................... ATCGTGGATGATTACCACCCCATTGGAGCAATTCAGCCCCGG 65429 37 100.0 33 ..................................... TTTTATGAGGATTTTCGATTCGCTCTTTTTTTG 65499 37 100.0 38 ..................................... ATCTGCAAACCTCAGCAGCGAATCTACGCAAGAAGCAA 65574 37 100.0 33 ..................................... TATTCATCATCTAAGCAAGCCCGGTAATTCCAT 65644 37 100.0 49 ..................................... CGGCATCACCCAAAGCTCGATCGGCAAAGTACAAGGTGCCACCAACAAA 65730 37 100.0 35 ..................................... TCGGTAGCAAGTTGAATCTGTCGGCGCAGCCGCTT 65802 37 100.0 37 ..................................... GATGCCTTTTTCCCACAAGGGTCAGACAGCAGAGGAA 65876 37 100.0 39 ..................................... AATCGGGTGCGGAATCGCTGAGGATAGCACCGCATCCAC 65952 37 100.0 38 ..................................... ACCGTTGTATTTCGGCTCTCGGGTGGCGGTTTTTCTTG 66027 37 100.0 35 ..................................... TGGACTTGTCCCCAGACCTGCCTACATCAAATATA 66099 37 100.0 42 ..................................... TTACGGTAAGGCCTTGGCAATTCTGGAAGAAAAAAACGCAAC 66178 37 100.0 41 ..................................... TATGATTCTGTTTGGCGCCGTCGGCTCATAGCTACTTACGA 66256 37 100.0 33 ..................................... GTGGAATTCTGCTTTAAAATGCCTCGGGCCATC 66326 37 100.0 37 ..................................... TTGAGGTAATAAGTGAGCGAGGAAATGTCATATTTCA 66400 37 100.0 37 ..................................... AAGCTGACACCCATAGCCTTCGCATTAGCCAAAATCA 66474 37 100.0 37 ..................................... AATTAATTATTGATTATTTATACGAATTTTACAATGA 66548 37 100.0 43 ..................................... GCTTCCAAAAGTCGATCGCCTGATGGGTTTCCCCCGTGTTCAA 66628 37 100.0 35 ..................................... ATTGGCAAACGGCCTTATAGAAAGAAGTGGACTGA 66700 37 100.0 35 ..................................... GAACAGTGGGAAGATTTAAAGGTTGTCGGCGTCCC 66772 37 100.0 39 ..................................... GCAGCAGTGGGATGCCGATGACATTAAGCAAGTCGTTTA 66848 37 100.0 39 ..................................... GCCGAGGACGTTGATTGCTGCGGCCAATTTTGGGATCTC 66924 37 100.0 37 ..................................... ATCGATGTCAATTTGATCGGCGTGGTTTACTCTTGTT 66998 37 100.0 37 ..................................... TCGCCTCGCCGGAGGCTGGCACATCAAACCAGGCAGA 67072 37 100.0 35 ..................................... GTATTTGTGATTCTAATTAGATCACTGAAAGTTTT 67144 37 100.0 39 ..................................... TCTTCGTACTCGTCGCTGCGGTAAGCTCCGGTGCACCAC 67220 37 100.0 36 ..................................... CCGGCAAAAGCTAGGGCGACAACCAACGGAAAATTA 67293 37 100.0 39 ..................................... TCGCTCGGTAGCACAGAAAATCGGTAGTGGCTAATATTC 67369 37 100.0 35 ..................................... CGCTATGGGTATGCAGCATTTACACCCTATCCACT 67441 37 100.0 35 ..................................... TTTCTTTGTCTTGATTGCGGTCAATTATTGTAACG 67513 37 100.0 39 ..................................... GATGAAAAAGAAGGAGATATCGAGATTACAGTGCTTTCT 67589 37 100.0 42 ..................................... TAAGCCTGCCTCTAGTTGCTGGGATTCGGCGACAAACTCACC 67668 37 100.0 40 ..................................... TTTTAGCCCGCACTTCTACTTTCGATTTCGCACCTCGCAA 67745 37 100.0 36 ..................................... CGACGGGGGCTAGCCTACTGATTGACGGCCGCATAA 67818 37 100.0 54 ..................................... TGAGCTTAACCGGGGCATTTATTCGCCCCCAACTTTGGGGGGGGCTATATTTAA 67909 37 100.0 44 ..................................... GACGAATTGCCAGGGGAAATCATGATAGCCGTGCGACATTCAAG 67990 37 100.0 47 ..................................... AATGAAGTAGAGCCAATGCTAATCAAAATGGCGTTGAGTGCCATTGC 68074 37 100.0 34 ..................................... ACAATGCGGATAGTTTTTCCTTGCCAATACTCTT 68145 37 100.0 34 ..................................... TTTTTTTAGGCAATTGGCACGTACCACTTTTTAA 68216 37 100.0 36 ..................................... GAAACTCCTCATTCTTGGCTAACAGTAACAATCCAA 68289 37 100.0 34 ..................................... CTTTAACTAGCTCACCTGTTGGGCATTGAATGTT 68360 37 100.0 41 ..................................... AGTAGATTCTCATCATTCTTATCTTCACTACAATACCAAGC 68438 37 100.0 38 ..................................... GTTCAAGGCTTAATTAGGAGTGAAGGAGGAAAGATTAA 68513 37 100.0 40 ..................................... GTACTTCTGTAACTCTTTCTGCAACCTGTGCAACCTGTGC 68590 37 100.0 34 ..................................... CCGCCGCCATAATCTTTCTGCGTTCCGGGCGAGC 68661 37 100.0 38 ..................................... TTATGGATGGTAGGAATCGGCGCTAGAAATAGCGATAA 68736 37 100.0 46 ..................................... TTTTAAACGAAGTAGTGGAAGAAAGCCTTAATCAAGGTTCCCCGTA 68819 37 100.0 38 ..................................... GACAATGAAAATCCCTCCAAAGATTCGCAGTCTATGTC 68894 37 100.0 39 ..................................... TATGGCTTTTATCCATTTTGCGTCTTTTCATTGCCGCTT 68970 37 100.0 31 ..................................... GCTGCATCACTGAAAAGGAAGCAGCGGTTGA 69038 37 100.0 37 ..................................... TTGGGTAAAACCAGAACCGAAAAAAGCAGTAGGTAAA 69112 37 100.0 36 ..................................... CAAACCTACGTAGAAGCAGCATGGCGTGGGAGTATG 69185 37 100.0 40 ..................................... TAAACGATTAAACGAAGTAGAGCGAAACCTTTGGAATGGA 69262 37 100.0 35 ..................................... TCGTACCAAAAATTGTCAGGCGCTCCAAAAGGCTG 69334 37 94.6 45 ....G............T................... TAACTTAATTGCTTCTACTTTGGGGTAGTAGGGGTCGTGGGTTCA 69416 37 89.2 0 ....G...A........G..................T | ========== ====== ====== ====== ===================================== ====================================================== ================== 62 37 99.7 38 GCCGAAATCAACCTAAACCCCTATCAGGGATTGAAAC # Left flank : CCGATAAACCGCAGATTTTGGCTTTTAATAAGGTAGATGCGATCGACCTCGAAAGCGAAGAAATCGGTAATTTAATCAGCCGACTTAAAGAAATTAGCGGCGCTCCTGTTTTGTTGATTTCCGCTGTTAGTAGAGTTGGATTGGATGAATTGATGCAGCAAGTTTGGCAAAAACTTGACGAGATGAACGAGAAAGAGGCGGCGGAACTCGAAGCCGTCGCGAGTGTTTAATCGCTTTCCGGTTCCTGGAATTTCCGTGAATGGGTAGGTGTTTTTTTGAGGGGGTCAAATCTTTCGGCTGTATGGCTTGTGCGGCAAGGGTTTGAGCCTCTATGCTGAAAAAAACGGTTCACGGAAACGCTGAAATTATTGCTGTGTATAGCTTTGATGGTTGTTGAAAATTTTGTCTCTTGACAGGGCGGTGGCTGAAATGATATTTTGTAGGTGCTTCACGGAACTGTACCTTGAAAACTAAATACTGTAAGGCTTCTGGCACGGGCG # Right flank : TTGGATTCAGTGCCAAAAAAACTTGGGAAATTACACTCGATCGTACAAGAAAATCAGCAAATTTTCTTGAGGCTTGGTATCGCTATTTTGGCAATTCAAACCGATGAGAGACTTCAGCAACTCCATTTTACCCAAGACACAATTAGCCTCGATTTGATGGATGGGCCAACCATTACCGTTCCTCTAGTTTCCTATCCCCGATCGCTGAATGCGACACCCGCACAGCGCCAGAAGTTGCAAGTATGCGGAGGTGGTGAGGGCATTCATTGAGAAGAAATCGATCGGGATCTCAGTACCGAAAGAATGTTGCGTGGATCGCCCCCTCCCAAAGCTCAATCAATGATTTCTCTAATCGGGCGATCGCTATTCCACAAGTTCAGCCCTGGCCGCATCAACACCAAGAAACCGGGTTTTTTACGGTTTCTGGGGCTGTAACAAAGTATTTCGTGAAAAACCCGGTTTCTGAACACCGGTGAGTAAGTCGGAAGTATTGTTAAATA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGAAATCAACCTAAACCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 103734-100575 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJNY010000077.1 Microcoleus sp. FACHB-61 contig77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 103733 37 97.3 35 ..........C.......................... TAAATTCGGTGCGATTATTCCACGAACACGAATCG 103661 37 97.3 37 ..........C.......................... CGGAGACTTTAAAAGTGGCAAGAGCTAAAGCTTCAGA 103587 37 100.0 42 ..................................... CTTGAGATATCAGGGGATTTTATACTTCCGGGTCTACTCTGA 103508 37 100.0 37 ..................................... CTGCTTCTTGCTGCCGTTGCTGCTGACTTACATAGCC 103434 37 100.0 37 ..................................... AAAGATTGAAGTCGCTGATGCAACTGTGCATAAATCA 103360 37 100.0 35 ..................................... TCTTTTTGCCATACGACTAAACGAGCGAGTGTTTA 103288 37 100.0 35 ..................................... AAGAATCCGCTCAGCATACTTTTGATATTTCTCAC 103216 37 100.0 40 ..................................... AATCTCTCCCATACCAGGGCCTGCGAATTTAGCGTGCATC 103139 37 100.0 40 ..................................... TTAGCTGGCGGAATCAAGACAGAACTCTTGGCATATATGG 103062 37 100.0 34 ..................................... AATCGTGAATGACCCATACGGCGAATACTTTGTC 102991 37 100.0 35 ..................................... ACAATCACAATTTCCGGCTCGCAGCCGTTTATCGC 102919 37 100.0 32 ..................................... ACTTCGCCGCGAAATGTCAATGGATCGAATTA 102850 37 100.0 42 ..................................... CTAACCGACACTGGGATATCCGGGAAGCCAACATCAGAGAAA 102771 37 100.0 38 ..................................... TGTGATTTGTTCTTCCATCCAATCACTCACCAGATTTC 102696 37 100.0 35 ..................................... TCTAATCTGCTCTTGCCAGGGGGTCGGCTGTTCTC 102624 37 100.0 32 ..................................... CAAAAGTCTAGTGTAGCAATAGTCAGCGAGTA 102555 37 100.0 40 ..................................... TTTAAGGCTGAAAAAATAAGTGAATTTACGGATTGCTCTA 102478 37 100.0 39 ..................................... TGCCGGACACGAACCAAACTTGTTTGATAAATTGCTAGA 102402 37 100.0 38 ..................................... ACTCAGGCAGTCGCCGACGGCGAGAAAGTAACGCTAGT 102327 37 100.0 33 ..................................... GGAGCGGTCGATAGGCCTCGGCATCACCGACGA 102257 37 100.0 38 ..................................... TGAACGGCAAAGATACTTTGCGGATTGTGCTTGCGATG 102182 37 100.0 38 ..................................... ACTCACTATCTGGCAACCGCACACTGGCTCAACTTACT 102107 37 100.0 40 ..................................... CTGGATATGCTCGCCTAGGTATGGGTTTAGAAAAGGCTGA 102030 37 100.0 36 ..................................... ATAATAGGACAAGCTGACTCAGTTGTAAGAGGAACA 101957 37 100.0 38 ..................................... CTCGGAAAATCCCGACAGGTGCGCTGGGTGAGGATGGA 101882 37 100.0 37 ..................................... CCCCCGTTCCTTCGTCAATTGCATCGCAAGGGCTTCA 101808 37 100.0 38 ..................................... AACGCGGCTAACTACTTGCTCAGGATTCATTCAACCGA 101733 37 100.0 35 ..................................... AGCCAGCCATGACTAGCTCCCCCATGCACTCCCGG 101661 37 100.0 32 ..................................... ACCCTGAGGCCCCTGATACTCCCAAATTGTGA 101592 37 100.0 36 ..................................... TTGGTGCTGTCTCTTTAATTTCTAAAAAGGATTCAA 101519 37 100.0 37 ..................................... TGGAGACGGCCGGCCGGTCGCCTCCGAGTGGAGGTGA 101445 37 100.0 47 ..................................... AAGTGTTGAGTCTCCGCTGCTGGCAGTCCCAGTGATGCGACATAAGC 101361 37 100.0 40 ..................................... CAGAAATGGAACGAACTCCTGCTCAAAGCGAGAAGTGCGC 101284 37 100.0 37 ..................................... CACCACGTAGTTACATAATCCTTTGCTCCACAGCTCA 101210 37 100.0 40 ..................................... CAATTACGCTCGGCACGAGCACTCTTGAGGATTCGGCCTA 101133 37 100.0 40 ..................................... AAAAGCTTAAATCGATCGCCATCCAATTGCACTCCATTCA 101056 37 100.0 41 ..................................... TGTAGCACTTGAAAATTATGACTGCACCACAAATCTATAAT 100978 37 100.0 35 ..................................... TACGGGGATGTCAGCGTCAGGCTGAAAAAAACCAT 100906 37 100.0 39 ..................................... TTGCCGTCGTTGTGGTGCAATTCAATGATCATGCTTTCA 100830 37 100.0 37 ..................................... GCTGTAGCAGATATCGCACCAGTGATCGAACTGATTA 100756 37 100.0 37 ..................................... GGTATGGCTTTAGATACTAGGGGCGATCGGCTTTTGG 100682 37 100.0 33 ..................................... CCAACTGGTACAAGATACTTTTGATTTTGATGT 100612 37 86.5 0 ...............TTT...C.......C....... | T [100587] ========== ====== ====== ====== ===================================== =============================================== ================== 43 37 99.6 37 GCCGGAAAAAACCTAAAACCCTATCAGGGATTGAAAC # Left flank : TCCGAAGACAAGCGCCGCACAAAGATTCACAAAATGCTGAAATCCTATGGGCAGTGGATGCAGTACAGTGTGTTTGAGTGTGCTGATTTGACTGAGACTCAGTACGCTAAGTTACGATCGCGCCTGAACAAAGTCATCAAACCCAACGAAGACAGTATTTTGTTTTTCCCGCTGTGCGCTTGCTGTCAGGGTAAGATCGAACGTATTGGTGGGGTAGAGCCAGTCGATCGCACAATATTTTTTGCTTAGTTTCCGTGAAGGGGTAGGTGTTAAAATCGGGGTATCAAATTTTTCGGCTCAAACTCATGTGCAGCAAGAGTTTGATGCCCCTCCTCTGAAAAAACGATTCACGGAAAGTGTGAAAGCTTTACAGGATAAGGTTTTGGAGTGAATATGAAATTTTTGGTATTGACAAGCCGCAGGCTGGAATGGTACTTTTGTTTTAGATTCACGGAACTGCACCTTGAAAACCAAATACAGCAAGGCTTCTGGAACGGGCG # Right flank : GCCCAAACTACAAAATTATTGGCTCAAAAATAGACTTCTCCTCTCTCTTTCTATCTCCTCCCATAACCTCAAGCAATCGATCGACTACACGCCTCCAAGTAAAATTTTCAGCCACAAAAGCCGGGCCCGCAACCCTAGCTTTCGCAGCGATTCCCGGCTGTTCGATCGCTATGCGCATCAAATCAGTCAAATGTTCCCACTCAGGAGCTAGGATAAATAAAGTTTCCCCCTCCCTCGCCACAGCCGTAAATTTACTCTCAATCTGCTGTGCAAAGTCCGATCGCGTAAAATCATCCGTAGGGCCGCCCGCAGTGCAAATAACCGGCAAACCGCAAGCAGCAGCTTCCAACACCGGCAGGTTAAAACCTTCTGCTAAATACGCAGAAACATAAGCATCGGCTGCTTGGTAAAACTCAGCTATTTGAGCAAAAGATAGCTGGCCACCAGTATAAATTAATCTCGGTAAAACCCTTGCTCTTTCGGCATCGTTGAGCACAACT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGGAAAAAACCTAAAACCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //