Array 1 289837-289089 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAPB010000001.1 Pseudomonas gingeri strain C1001 run0228_C1001_S17_L004_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 289836 28 100.0 33 ............................ ACGAACGCATCGGTATCGCCGTACTTCCTCAAC 289775 28 100.0 32 ............................ TGCTGCAGCCTGTTGCGCGCGCAGACGCCAGA 289715 28 100.0 32 ............................ ATGCGGTACACGATATAACGCTGATTGTAGTC 289655 28 100.0 32 ............................ CATCGATCCCGGCGTCACGGCCTTGTGCGCGC 289595 28 100.0 32 ............................ TACCTGCGCACGGATGAGTACATCGACACCTT 289535 28 100.0 32 ............................ TTGCGCCAGTCTCGGGCGCCGCATAGGCATTT 289475 28 100.0 32 ............................ ATGTTAGCGAACAAGGCTGAGTGCGAGGCAGC 289415 28 100.0 32 ............................ ATCAACGTGGCTGTGTTGACGACTGGCGTGAA 289355 28 100.0 32 ............................ AGCCCCCAAGGTCGCTCTGGCCTGGCACAGAG 289295 28 100.0 32 ............................ AGAACCGGCGGGCTGCTCATACTGCCAGCGAC 289235 28 100.0 32 ............................ TGACCGCAGCGGATGAGCGGGCGGATGTGTTG 289175 28 100.0 32 ............................ CTCCCCCTTCAAAGTCAGCCGCTATAGCGGCA 289115 27 92.9 0 ......................-....C | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.5 32 GCTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCAGTTGCTGGCGCTGAACTGGCTGACCGGTATGCGGGACCATGTGCAACTCAGTGAGGTGACGATTGTGCCGGTGCAGGTACGTTACCGGCAGGTCAGTCGCGTGCAGGTGGACAGCAACCCGGAGCGCTTGCGCCGGCGCCTGATCAAGCGCCATGGCATCAGTGAGCAAGAGGCCCGCGAGCGCATTCCGGACAGCGCCGCCAAGCGCTGCAACTTGCCCTTCGTCAACCTTCGTAGCAACGGTACCGGACAGGCATTTGTGCTGTTCATTCGCCACGGGTCCATTGTGGACACCGCCCAGGCGGGCACCTTCAACGGCTACGGTCTGAGCAGCACCGCCACCATCCCCTGGTTCTGATCTTCTGGACCCTCTTTTTTGAGTGAGGCAGGCACCTTCGTAAAATCAAGGACTTACGAAGGTGCCAAAAAAGAGGGGTAAAGACCCATTTCTCGAGTATTTACCTTTGCAGACAGGGCTTTACCGGGAAAGTCGTCTA # Right flank : GCACTCATGTAGAGGCGAGCCGGGAAATCTGTCGCAATACTCTGCGCGAGGTGACGTCAGGAGTTGCTCGGCGCAGGTCGATTTCACGGCCACCGTCATGCCCTGATCGTTACTCCCCTTGGTAACGACCTTCTCTGTGGTTTATGGAGAGAATGAGATTGAGTGTGATGGCGCTCAGTACAGACCACATCACCCGGCTGGGTTCGATAAATAAAAGCGCGCAAAGCACGATTGAGCTGTCTGCCAACATCTGGATGTTTCCGGCACGCCAGCCGAATTTGTTTTGCAGATAGAGAACGGCGATGCCAATGCCACCAAGACTGGTGCGGTGGCGAAACAATACCAATGTACCGATTCCCAAAAGAATCCCGCCGTTGATACTGGCGTGCGCCGGGTGTACCCAGCCGATAGTGACCGTCATGGGGATCAGGGTTGTCATGAGTGAAAGCAGGGTGACCGCGCTGAATGTTTTCAGCGTAAACGCAATGCCCATGCGCTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 299323-298636 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAPB010000001.1 Pseudomonas gingeri strain C1001 run0228_C1001_S17_L004_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 299322 28 100.0 32 ............................ CCAGAGAAAACCATCTTGATTGCCTCCCCCAG 299262 28 100.0 32 ............................ GTATCACGAACGGTCACCTTCCGGCCCCAGTG 299202 28 100.0 32 ............................ TGATTGAAAAGTTTGTCAGCATGATTGTCTGC 299142 28 100.0 32 ............................ TCGATGGCTCTTCTCATGAATCTGTCAGCCTG 299082 28 100.0 32 ............................ AGGTGCGCGATCAGCCGCGGGAAAGAGCAGGG 299022 28 100.0 32 ............................ CCTCTTTATTGGCATGCGGTTTGCCGTTGAGG 298962 28 100.0 32 ............................ ACTTACGAGCCTGCGTCATTGCCCATCAGCCT 298902 28 100.0 32 ............................ TAACCGGGTGAACCAACGAATGGAGAGAGTCA 298842 28 96.4 32 ...........................G AGTCATTACCGCCTTGTTCGCATTGATCTGCC 298782 28 100.0 32 ............................ GATTATGAGTCGGACGCTCTAACCATCTGAGC 298722 28 85.7 29 .C.........CAT.............. AAAGGCGGATTGCTGTTCACCGAGGTGGC 298665 28 67.9 0 .CA...C....CAT.A..G..G...... | TG [298660] ========== ====== ====== ====== ============================ ================================ ================== 12 28 95.8 32 GTTCACTGCCGTGCAGGCAGCTCAGAAA # Left flank : GTCATGACAGGGATGAAAAAACTGCTGGCATTGGGCAGGCCATTGTTTGGGTCATTAGTGTCAGGCATAGGCGTCCCTTCCGTGTGAGAGCCCCCAGGTGCCCATGCCGCGCAGACCTATCCAAGGCTTATACGCTGAGTATTGCTGCAGGATGACGAGGGCGATTGCTATCAGCGTGAAACAGTAGCAGCAATTGGAAAGCCCACAAGCATTGGCTCCATGAGCGCTGACTACCTCGCTCAATGTGCTGCAACATCTGAGCTGACTGTTGAGGCGCATCGATGCCCGTGTTGCGCCGCAGATGTTGTCTCGGCCAATCTCGTGAATGGGCTTGCTCTCAAGGTCGGTTGCCGATAAGCCTGCGAGCAGACCCTCTTTTTTCAAGATGAAATACCACCTTTAGAAATCAAAGACTTACAGGAGAGTGAAAAAATAGGGGTAAAGTTGGTGTTGCAGATCATTTGTCTTTTCGAACAATACGTTATCTTCGGATTGCTCTA # Right flank : TATAAGGACATATTAGAGAATTCTCTATAGCGAGCGCGCTGTCGCATAGGCAGCATGACGGCGTGGCTTGGCTTAACACCTGCAGACCGGTGGTTCGGCAGTACGAACGGTTGCCGAAAAGCCAAGTCGGGCAGCATGTGGTTGTACCTGTGGCTGTTGGCACATTGCCATCCTTTCAGTTATAACCCTGCTCAACGATTAAACTGATGTAATCGGCTGCTCGCTCATGGAAGAAATCCGCTCCTCCGATCTCAAGACGATCCTGCATTCCAAACGCGCCAATATCTACTACCTGCAGCACTGCCGGGTGTTGGTCAATGGCGGTCGGGTCGAGTATGTGACCGACGCCGGCAAGCAATCGCTCTACTGGAACATCCCCATTGCCAACACCACGACCGTATTGCTGGGGACCGGAACCTCGGTGACCCAGGCGGCGATGCGTGAGCTGGCCCGGGCCGGGGTGTTGGTGGGCTTTTGCGGAGGAGGGGGTACGCCGCTGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 302192-300903 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAPB010000001.1 Pseudomonas gingeri strain C1001 run0228_C1001_S17_L004_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 302191 28 100.0 32 ............................ TACAAGTTCGCCGACAAGTCCACCGCGCAGAT 302131 28 100.0 32 ............................ TGTCTGCCGAAAAATGATCTGGCGATCCGAAA 302071 28 100.0 32 ............................ ATTCGCGCAGGAATTCATCATATCCACCCAGG 302011 28 100.0 32 ............................ ATACGTCGCGGAGTTCGTTCGACTGCTGGTGG 301951 28 100.0 32 ............................ AGAGCCTTGTCGAACATCACTTCAGCAATCTT 301891 28 100.0 32 ............................ ATCGACGTTCAGCCAGTCATCCAGCGAGTTGT 301831 28 100.0 32 ............................ AATCAGGTCGGCGCAACTTGTGCTGTGGAAGA 301771 28 100.0 32 ............................ AAGACCATCCCTACGACCATTGAGCGCAAAGG 301711 28 100.0 32 ............................ TACAATGGCGACTTCGAAGGCGCTGACTGGAT 301651 28 100.0 32 ............................ AAGAACCTTATCGATGCTGCACGGAACCACAT 301591 28 100.0 32 ............................ TTTGCGCGTGAGGGGATTGTGCATTCTGTTGC 301531 28 100.0 32 ............................ TAACGCGTCTACCACTTCATCGACGGACTTGG 301471 28 100.0 32 ............................ GATCGGTGGAACGATGAATTTCACCGATGCAG 301411 28 100.0 32 ............................ CAACTGGTGGGCAAAGACCGCCTGGCTGGCAC 301351 28 100.0 32 ............................ TTCAACGTTTGCAAAGTACGAACGCGGAGAAA 301291 28 100.0 32 ............................ ACAGCCATTTGAAGACCTTGTGCCCGTTGTCT 301231 28 100.0 33 ............................ ATGGTGGTCAGGCTGCCACCACAGATCCCCCAT 301170 28 100.0 32 ............................ GCACATGTGCACCTGCTGGGTCTTTGTGAACG 301110 28 96.4 32 ............A............... TTGACCGTCGGAACACCGGCCTCGATGTGAGC 301050 28 96.4 32 ............A............... TGTCGCGCCTGGCGGGCTGGAAAAAGGTTGTG 300990 28 96.4 32 ............A............... TTCAGGCCGTCGAACGACTTGAACAGCTCGGC 300930 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.3 32 GCTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TCAGGTCGCCCCTGATTCAAAAAAGGAACAGTACCTTTTCTGAATCACCTTTGGACATGTCCGAAATATGAAAATGTGAGTGACCTCAGAATCGTCACGCGCCTAGGGCTTCCATCAGATCCCGACCGAAGGCCGTGGCGACGTACATGTGATCTGTTCGCGGCCTCTCAACCGGCAGAGGAAACGAAGGTAATGACCGTGCTGGCGATGGGGCAGAGGAACACTGCGGGCCGCCAGCGTCTCGCAAAATCCCGAGTGGGGCATGCGCGCCGGGAGATGATGAGCCGCAGCTTCACCACGCGGCTGGATCAGCTTTGGCGGGTGTCTTGTTGCTGAGCCCAGAGGAGGCGTCACGAAGTGTCATGGCTGACCCTCTTTTTTGGGTGAGATCCCGCCGCTAATAAAATCAATCACTTACGGAACGGCAAAAAAAGAGGGGTAAACTGGCAATTATTGGGGATTTGCCTTTGCAGGCAGAGCCTTATCACCGAAAGTGTCTA # Right flank : CAGAACTAGAACCACACACCGGCGGCTAGGCCGTTCGCTGCCGTATAGGTGTTTATTGAGCGGGCCTAGTCAGTAGATGGAAGCCCGAAGCACATAGGTAACCTGATGTGGACGCTGTTCGCCCATTACTCCCAGTTGAGCGATGGAAGGCCGAAGTCGTACCAGATGGACCACAGGATAACCAGCAGACCGGCAAGCACCTCGCGGCGGCGATATAACACCAGGTAGCGCAATACCACGCTCAGGTCGGAACGACTCAATGCACGTAGGCTTTGCCCGTGGGACATCAGGCGCAACGCATCCTCAGGTGTGTCGTGGTGGCGGCGGGAGTCATAGCCATATCGACGATAGGCCCCTGATGAGCCGGTGTACCCCAGTAGGATTTCACCCTCTAGATGGATCAGGCGTGGCCTCAGGTTCAGGGACTCCATCAGGTCCGTAGCGCTGCTGACGATGGAGCTCACTCGGTCTTCGCCAAGGATGCCGATCGCATCGCCAGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //