Array 1 7280-5398 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUL010000002.1 Listeria cossartiae subsp. cossartiae strain FSL L7-1426 NODE_2_length_494483_cov_51.367785, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 7279 36 100.0 30 .................................... TTGTTATCCAGTCCATCACCTCAGTAGGCA 7213 36 100.0 30 .................................... CAACTTTCTGTGGCTGTGAGGGAGCTTCTA 7147 36 100.0 30 .................................... ATTTGGAGTCAGCAGCAAAGCAATCGATTC 7081 36 100.0 30 .................................... TTTATCTATTTTTGCTCGCTTGTCCCACAT 7015 36 100.0 30 .................................... AGCTTCTTCAATAGCTAGTACGTGAGGCGC 6949 36 100.0 30 .................................... CCACTACCACGACCGCCCTTCATCCATGTA 6883 36 100.0 30 .................................... CATCGTGAACGTATGACTATTCTTTAGCAT 6817 36 100.0 30 .................................... ATAGATTAAAAACGAAAAAACCAATTTTTG 6751 36 100.0 30 .................................... TGAAAACATTCCACAAGTACATGCGAAGGA 6685 36 100.0 30 .................................... TTGGTTATGTCGGAACATCCCAGAGTTACT 6619 36 100.0 30 .................................... CCGAGCAAGCGTCTGAGTCTCTAACCACTG 6553 36 100.0 30 .................................... TAGTTTAGATAATGCCGCTTGTACATTTGA 6487 36 100.0 30 .................................... AATAGTTTGCAATCCTTCCACTCCTCATTT 6421 36 100.0 30 .................................... AAACGGCGTTTCTTGGAAACGTAGTAAAGA 6355 36 100.0 29 .................................... ATGCGAATTTTGGCGTTCGATATTTCGCT 6290 36 100.0 30 .................................... CAAGGACACGGATTTCATCCGTGCTTGTCA 6224 36 100.0 30 .................................... TGAAACACCTATTATTGAAGACAACTCTGA 6158 36 100.0 30 .................................... AAAGCTTCTTAGCTGAAACGCCGGAAGCTT 6092 36 100.0 30 .................................... ATGAGTCGTGAAATATTCGAAAATGACATA 6026 36 100.0 30 .................................... GCTCACACACAATCACGTTAAAGCGGTTGT 5960 36 100.0 30 .................................... ACAAGACTGATTTATACAGCTACATGAAAA 5894 36 100.0 30 .................................... ACCCACTGCTGCTCTTCCGGACGGCAGTCG 5828 36 100.0 30 .................................... ACTTGGTTGATGACTTTGAAGAGTCTACAC 5762 36 100.0 30 .................................... AAGGCGAGTTACTAAAATGGAATCGACTTA 5696 36 100.0 30 .................................... CGTTACGATGACAGATAACTTTGACGATAA 5630 36 100.0 30 .................................... AAACCTCCATCACTTGTTACCGACATAAAA 5564 36 100.0 30 .................................... AAATCTAAAGAGCTATCGCCCGTGCTAGGT 5498 36 97.2 29 ..................................C. ATCTGATGAAGATAACTACGCTGAAAAAA 5433 36 77.8 0 ......A......A......A..G....G...T.TA | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGATAAGTTAACTGCGACAATTAGCGAGTTAATAGGTTACGAGCTATTGGAGCATGAACTAGATTTAGAAGAAGATGAAATCACGGTTATTGAATTATTTAAAGCTTTAGGAATAAAAATAGAAACTAAAAGTGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTCTATAAATATTTATCAAAGAAGAAGTTGCTAGTTTTTATAAATGTATGTGCTTATCTTACAAAAGAAGAGTTGTTAGAATTAAGAAGGTATATTTCTTTATATCAAGTGAAAGTTTTGTTTATTGAACCTAGAAAAACAGACGGCTTTTCGCAGGTTATTCTGGATTCGGATTATTTTCTGCATGTGGAAAATGGTGTTTAAGGACCGGACGTTCTTTGAAAAAAAAATATAGTTTAATTAATTTATTAAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTTGGAGGATAGAAAAATTCTACGAG # Right flank : AGAAATAAAATCTTTCACATCAAAAGTTCTCGGTAGCTTTTAACAAGGACTATAAAAATTCAAAAAGGAGCTAAACCAACCACATGACACAATATCACTACCTCGCTTCAAAGTCGCTCCTACAAAAAAATGAAGATAAGCTGGCTTCCCCTTTCTTCTATATAAACGATCTAGATTTCTTAATCTTAAATTTCGAGGCAAACATTGACTGTGATACAAATGATTTATTCTCCTATTCAATACACTTCAATCAAGCTTGCGAATTTCAAGTTGGTATAAGTGAAGGGGAATTACCATTAAAAGGCGAAGTGCAAAATAACAAATATGAATCTAAAAGTTTGAAAATATTATATGATTACATTATAAAAGCGAGTAAAGAAAGCGATACACTTGAACTATATACTTCGTGGAACGGCGAGGAGAATCTTCCTTTAACAAATAAAACAGAACTATCCATAGAGAATTTAACTCCTGAAAGCTTGATTTTAAGCGATAGAGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 1107972-1106751 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUL010000001.1 Listeria cossartiae subsp. cossartiae strain FSL L7-1426 NODE_1_length_1378538_cov_38.188298, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================== ================== 1107971 29 100.0 36 ............................. CAGATGGGCTCGCGGACGTCAGAAAACGGGATCTAA 1107906 29 100.0 34 ............................. CCCATAGTTAATTTACCTAGTGTAAAGTTACCAA 1107843 29 100.0 36 ............................. GAATTTGAATTTGTTAAAAGTGCGGAAAGTATGTTA 1107778 29 100.0 35 ............................. GTTCTAAGTATAATTTTTTCCAACTCTGGGATAAT 1107714 29 100.0 36 ............................. AACGTAATAGGCTCTTTGAATGGTAAAGGAATCGTT 1107649 29 100.0 35 ............................. CCGCAGACATCGCACTGCCTATCCCCATCAACAAC 1107585 29 100.0 36 ............................. ACGCAACAGAAATAATATCCCGGCTCGTGCCTCTCG 1107520 29 100.0 34 ............................. TTTAATATCAATCCACCGATTCCTACCGTAAACG 1107457 29 100.0 35 ............................. CAGTGATTATGCTAAGACCTACACAATCATTATCG 1107393 29 100.0 36 ............................. TTAAAATAGGTAAGATGGTACTACCTTTTTTTGCTA 1107328 29 100.0 35 ............................. TCTGAAGCGTAAATCTTAATGTTCGAAGTACGTAT 1107264 29 100.0 36 ............................. TTGAATAAAATAATTCTTCTCTGCAGCTAAGGATAT 1107199 29 100.0 36 ............................. AATACAACAGTAGCGCGGGACTTAGTCGAAAGTTTA 1107134 29 100.0 35 ............................. TTTGCAGTTTTTCAATGGTAGGCTTCTGGTTTTTC 1107070 29 100.0 36 ............................. TTTAATTTTGCCGCTGTTGAGTTTTGTGTTATTCCA 1107005 29 100.0 36 ............................. TCTTCTAAAACTAATGTTGGTTCTAAATTAGAGTCT 1106940 29 96.6 34 ...........G................. ACAAGAAAGCCTAATCGCTTCATTTCTGAACTCA 1106877 29 100.0 68 ............................. CATGCTTCATCATTGCTTGTGTAAATGTAAATCGACCAGGTACAGCAGCTTATCAGTGACCGAACCGG 1106780 29 86.2 0 ...............C......CC....C | A [1106755] ========== ====== ====== ====== ============================= ==================================================================== ================== 19 29 99.1 37 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CACTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACCCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCGGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGGCAACAAAGGTGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGCTTTTTAGCCGAAATCTGAAGGGATAAGCTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTCCTCTCAACATTCAAACTCCAAAAATAAAAAAGACCTGGACCCCAATCCAAGTCTTTTCCCATAACACCTAAACCAACAAAACCACAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCTTTAGAAGAAGTAAGCCCGCCAAAAAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAACTCTGCCCCCGCGAAAAATAATCCCCACACAAGCCCTGCCGCAAGAAACCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCTACGCCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTTGTAAAAATAGAGCTTGAAACGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1124224-1123543 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUL010000001.1 Listeria cossartiae subsp. cossartiae strain FSL L7-1426 NODE_1_length_1378538_cov_38.188298, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1124223 29 100.0 35 ............................. AACACAAACTTACCACAGTGCTGGCATAAGCCACC 1124159 29 100.0 37 ............................. TTTGAAATCAAAACTAGGTCGAGTAGCGTGCAAACAG 1124093 29 100.0 36 ............................. CTAGAAGGAGCGAAAATGGAAGTTAGAACCTCTAAA 1124028 29 100.0 36 ............................. GTAGCAAAAGGCAAAAAAGTAGATATGGTCGACTTT 1123963 29 100.0 36 ............................. ATTGACCGAACTTGAAAAATTGACTCAAGATTATGC 1123898 29 100.0 36 ............................. GAAGAAACAACTAGAAAACACAGCTAAGAGCATCGC 1123833 29 100.0 34 ............................. ACGGATTAATGACCGCGGTGTATTCATGGATGGG 1123770 29 100.0 38 ............................. TGACTAAAGAACAACAAGAAATTCTCGAAAATTCAAGC 1123703 29 100.0 37 ............................. ACTAATTTCATCAAATCAGATAATATTTTTATCAAAA 1123637 29 100.0 37 ............................. CAACGAATTCCGTTTTTTTAGAATGTTGCTGCCGCCA 1123571 29 82.8 0 ..C....T.......CA......A..... | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 98.4 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTACTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTGCAAAGCTCCAATATCAAAGAAGTCATCACATCCGACTCCATTGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATTTCTATCGGCCGTATTTTAGGACGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGATTTAATGAAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGCGTTTGGTTATCTGTCGACCTTTGATAGCGTGAAAAATGCTGGGGATCGACAGAAAGGTGAGAGTGATTGGCGTGGAGGGAGTTTGGTGGTTTTTTCTTTTGAAAATCATGTAGAGAAGGGTGGGTTTTCGTTGGTTTTTAGTTGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTTCAGATACAACTCCATCCTCGTCTATCAAGAATAAAAAGAGTGACTGCGATTTCAGCAGTCACTCTTCTTTTCAATCATTAAACTCTTTCAAAACGTCCTCTTTAATTTCAGTATAATTTTTTACTTCCTCTTTCTCTTCAGAAATAAAATTATATACTTCCACTTCTCCTAAATTTTCAAAATCCGAAAGAGTAGCTTCCGTTTCTTTCAAATCTTCATTAAATTTTCCGTAGCCCATGCTAATTATCGAACTTAGTTTTTCACTATCATGTCCACCGCGCAAAAATAACGTATACTCTTGCTCTTTTTCAAGAGCGATATAGTTTTCAATGGATTCATACGCGCCTTCATTTAAATACCAAGGTTCTGAAACATCAATTTTGTCGCCTTTTTTGAAGGTGCCTTTATAAGTTTCTAAAACTTCTACTTCACTTATAGTGCTACTATACTCCATTTTTTCTTTATCATAATCGCCAATTTTCTTGTTTTTCACT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //