Array 1 1272-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJNU01000044.1 Bifidobacterium longum strain N3A01 C2107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1271 33 78.8 32 AG.AA.A.A.......................C TTCCGCGAGCAGATCGGCCCAATCATCAGCGC 1206 33 97.0 33 ................................C GCAGAGCCCCTTGTGTTTGCCGCAGCCTCCATG 1140 33 100.0 33 ................................. ACGTGTTGAAGCCGATGAGCGACGTGTGGGATT 1074 33 97.0 32 ................................C ACACGTAACTCATTCGAGAGTCACAATAGTAG 1009 33 97.0 33 ................................C ATGCTGGCCGGGCTGATCGCGGCGCGGGTGGCG 943 33 100.0 34 ................................. ACGACACCACACCACGTGTCACTAACCCAACCAG 876 33 97.0 33 ................................G AACTGCCAGCTGGAGGAGGCGTTTTTACTTGCC 810 33 97.0 34 ................................C TACTTCACATTCAATATCATGGACTTCTAAAAAT 743 33 97.0 35 ................................T CCAAACGTCCGCTAGCCATTCTGCCCGCCAAGGTC 675 33 97.0 35 ................................T TTGACCTCGAACTAGTGTCGGAAGACAAGCGCAAG 607 33 97.0 32 ................................T CAGGCTTTCCGCCGATTATAAGGTTCCCGTGG 542 33 100.0 33 ................................. CGTACGGGAACACGTTGTCGTAGGTGTCGTGCA 476 33 100.0 33 ................................. ATTGCGTGTTAGCGTAAATACGCGCTATAGTAG 410 33 100.0 34 ................................. ATTTTTCCAAGAAGTCCAAGGGCAAGAAGGCTGT 343 33 100.0 33 ................................. AACAATGTTCATCACCACCGAACCATGCCAATA 277 33 97.0 34 ................................C GTGGTGCCGGCGACATGGCCGAATCAGCGGCCGG 210 33 97.0 35 ................................G ATAACCAAGAAAATCGTCAAGGTCTCGGGCGGCGT 142 33 100.0 32 ................................. CTTCAACGGACATCGGCTCGGGCCGGTCTCCG 77 33 97.0 0 ................................G | ========== ====== ====== ====== ================================= =================================== ================== 19 33 97.1 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : CCATCAGCCCACACTACGGAAAAACACTGCCGAACCTGTCGAACAAACATTG # Right flank : GACTGATCCCGATACCTGGGCGTCATACCCGGAGGTCGCACCCCA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 356-1312 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJNU01000004.1 Bifidobacterium longum strain N3A01 scaffold16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 356 33 100.0 31 ................................. CCACGTCGGCAACAGAACCGGACGACGGGTT 420 33 97.0 35 ................................T TTGATTTCGGCATACCGTTCGATGCCGACCCGGAG 488 33 97.0 32 ................................T CGTTGATGGGGCCCAGTCGTTTGCTCAGGGCG 553 33 100.0 32 ................................. AGCAGGGCATCCTGCCCGTCAAGTTCGCCGCC 618 33 100.0 33 ................................. TCATCCACGCTGACTTGAATGGCGTGCTTATCG 684 33 97.0 32 ................................T AAATGGCAGTGAACGTGACCCAGAAAGACCAG 749 33 97.0 34 ................................C TCCTTGTTGAGTCGTGTTTCGATTTCGATGCACA 816 33 97.0 33 ................................C ACAGCGAGACGTAATACCGGTTGGCCCTGCCAT 882 33 97.0 33 ................................C CCGAGCTGTATCACAACGCAAAATTCAAGCTTG 948 33 97.0 33 ................................T TGTCACTATCTTATTTGATGTTGGCGCTCCCGG 1014 33 100.0 35 ................................. ATTGGTCATCACATCATCGCTCGAAAGGAGCAACA 1082 33 100.0 33 ................................. TTCCGGTTTGCGTAGGCATCTGCCTGATTGAAA 1148 33 100.0 34 ................................. CTGCCCGAATGATTCGGGTGGAGGTTTCATCGAG 1215 33 100.0 32 ................................. CCCAGGGCAAGGACCTCGCCAAGGACGTGGCC 1280 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 15 33 98.6 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : GGGTGCGTGGATTGAAATGACTGATCCCGATACCTGGGCGTCATACCCGGAGGTCGCACCCCACTGGGGTGCGTGGATTGAAATCGAAGGAGCCGTGGATGGGATTTCTGAACAATCTGGTCGCACCCCACTGGGGTGCGTGGATTGAAATTCGTAGGCTGTGCGAATCTTGTCCTCGTTGGCCTTGCGTCGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCACTGGGGTGCGTGGATTGAAATACTGTCTCCACCTGTTCGGGGAATAGTTGAAACGG # Right flank : AAGAACAGATTCGTAGGACACTGCGAAAAACAAATAGGGTGCTTTCCGCCATCAACAGCGGAAAGCACCCTATTCTTATGATCTCTCTGTCCTAATTAGAGCACCTCACTCCGCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTCGGTCTTCTCCCACGGGAACTCAACGTCTGTGCGGCCGAAGTGGCCGTACGCGGCGGTCTTCAAGTAGATCGGGCGCTTCAGGTCGAGCTCGTCGATGATGGCGGCGGGGCGCAGGTCGAAGACCTTGCGCACGGCGGCGGCGATCTGGCCTCGCGTCACACCCTGCTCGGTGCCGAAGGTCTCCACGTTGACGGACACCGGGTCGGCAACGCCAATAGCGTAGGCGATCTGGATCTCGACTTTGTGAGCCAAGCCGGCAGCTACGATGTTCTTCGCAACCCAACGGGTGGCGTACGCGGCGGAACGATCGACCTTGGACGGGTCCTTGCCGGAGAACGCGCCACCGCCGTGGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 82524-82868 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJNU01000007.1 Bifidobacterium longum strain N3A01 scaffold9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 82524 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 82590 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [82596] 82674 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 82734 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [82782] 82782 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 82839 27 81.5 0 C.............C.....C....CG | GC,C [82856,82860] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGC # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2946-2318 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJNU01000022.1 Bifidobacterium longum strain N3A01 scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2945 33 97.0 33 ................................G CATTGGGCGGCGATTTCGGGGGTGAGGGGCATG 2879 33 97.0 33 ................................T GACTGTAGGCCAGCACCTGAGATTCGACCGCCA 2813 33 100.0 36 ................................. TGCAGGTATGGGGCTCGTATGATACTATTTTCAGTA 2744 33 100.0 34 ................................. TCTCGATAAGATACCATCTGACGAAACCACCGCC 2677 33 97.0 34 ................................T TCGTCATCAAATTATTAAAATCACGGAACGTCGT 2610 33 100.0 32 ................................. AATCAAGCGGACCATAACCCGACACGTAACCA 2545 33 100.0 31 ................................. CGACACCATAAGTCCACACGATCATTAAGGG 2481 33 97.0 33 ................................T TTTTAATAAATGTTCAAACTCACGGAATAGAAG 2415 33 97.0 32 ................................C CAACGTTCGGTGCGCGGTTGTGTCGTGAGGTG 2350 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= ==================================== ================== 10 33 98.2 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : GACGAATCGCAAGATAGCCTGCGTTACTACAATTTAGGGGCGAAGTATTCTTCGAAGATTGAGCATCGCGGAAGACAGCGGCACCTGCCAATCGATGACGTGATGATGCTCTAATGTCGGTTCGTGTGACGGTTTTCCATGATGACTGGGCAATGCAAAACCTTACTGTGATGAAGACCAAGGCGGATAAAACGAGGTAGGACAGTATAGGACGATACGATTAAAATCGTGGCTGAGCATCGATGCTTGATGCTGCAGCCATGTGACCAGCGCGAACTCTGAGTTCTCATGAAATACTTGTTCTTTCGCACTGAGATTAATGAATGCTTGGAGACTGATTATGTTCTCCTCGTCGTTTGATAACTCAAAAGTGGATGGTCTGTTGATGTTTTTGGTTCGAGAATTTGTGTATTGAGCGATGTACATGGATTTTCGCGATAAAATCAGTTTTGAGAACAGACGGAGCTTCCATATTATGGAATGCTATGCCCATTCTCGCG # Right flank : ACCGTCTCCATTAGCGCGTATCCGTAGCGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCGCACCCCACTGGGGTGCGTGGATTGAAATCGTATTGTGTGTTGGTAGTGCTAGCCGCTGTGGTAGTCGCACCCCACTGGGGTGCGTGGATTGAAATTGATTGTGTGGGGTTGTTTGATTTTGTGATGGCGCGTCGCACCCCACTGGGGTGCGTGGATTGAAATAGATACATTGTGTTGGTGAGTGTCTGCGGGTTGGTCGCACCCCACTGGGGTGCGTGGATTGAAATATACTACCGGAAATATTCGCACCGTTGAAAAAGCAGGTCGCACCCCACTGGGGTGCGTGGATTGAAATAAAGTTTGTGCGGACGTTGCAAGCGGACACC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //