Array 1 271-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPFK010000117.1 Ruminococcus sp. 1001270H_150608_F2 NODE_117_length_5230_cov_33.584, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 270 36 100.0 28 .................................... AAATCTGTCAAGCAAACAAATTTGGCAT 206 36 100.0 27 .................................... ACAATTAACAATGACTATGTTGTACCG 143 36 97.2 25 ...................................A GGCACAGCAGAATACGCAGGCTCTA 82 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 4 36 99.3 27 ATCTACAATAGTAGAAATTCTAAGGGTTGATTAAAC # Left flank : ACAAAGTATGCTGAAGAACTAGTTAAGAAGATGGAAAAGAGTGGTGCTAAGGCTTACCTAGTTAACACAGGTTGGAACGGCACTGGTAAGAGAATTTCTATTAAGGATACAAGAGGTATCATTGATGCTATCCTTGATGGTTCTATTACAAAAGCTCCTACAAAGACTATCCCTCACTTCAACTTTGAAGTTCCTACAGAACTACCAGGTGTTGACCCAGCTATCCTAGATCCTAGAGACACATATGCTGATGTTAACGAATGGGAAACAAAGGCTAAGGATCTTGCTTCAAGATTTGTTAAGAACTTTGCTAAGTATGAAGGTAATGAAGCAGGTAAGGCTCTAGTATCTGCAGGTCCTACAGTAGAATAATTTTAGTCTTAACTAACTTTATAATTCATAAATTTAGGGTGTACTCACTGAGTACACCCTTTTGTTATGCCTATTTATTTTTATTAATAGTTGATTAAACAAATTCGTTGGAACCCTAAAAGAAAAAC # Right flank : CCCTATAATATATAATGATAAAAACTTTATCTACAATAGTAGAAATT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.20, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACAATAGTAGAAATTCTAAGGGTTGATTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 2889-2458 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPFK010000152.1 Ruminococcus sp. 1001270H_150608_F2 NODE_152_length_3365_cov_44.1931, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2888 32 100.0 35 ................................ CAATCGGTGTCTTTGAACCAACTTGATTTACTGAA 2821 32 100.0 35 ................................ ATTAGTATTAGTATTAATCTTAATCGTGTGGGCAG 2754 32 100.0 35 ................................ ATCCAACTTATCTTTTTGCTTTGTTGTTGCAAGAG 2687 32 100.0 35 ................................ CATATTACCAATAGAATTGACAACACCTTTGACAA 2620 32 100.0 34 ................................ ACTCGGTCAACGATAAAAACAATAATATTAAATA 2554 32 100.0 34 ................................ ATTATGATGATATCATAACGAAACTGAACTTGTA 2488 31 81.2 0 .....................AT.-...TA.T | ========== ====== ====== ====== ================================ =================================== ================== 7 32 97.3 35 GTTGCAATCTACATACACAAGTGGGTTGCCAG # Left flank : CATTCACTAAACATAATAGAAGTGAGAGATGGCATATATTGTCTAATGGAGATAAAAACCAACGAGATTTATATTCGGCATTTTTAATTATGAATAGTGATATAAGTTTGAAACATTGTAATAGAGAAAAGTGTAATGAAACATATAGTAATTTTAAAGTTTTACAAGATAAAGAAATAGAAAGATTATATAGTGATATAAGAAAGGGTAATTGCAAAAATATTTCAAGTTTTGGTTTTCAAAGAAATGCGAAAGCTATGTAAAGTAGATGTAATAGTGCATTCGCACTAAATAATTAAATATTAGTAGGACAGGGCATGTCCTAAACTACCAATGTATTAATTTCCTTTTGTAAATTAATACGATAGTAAATGGTTAGGGAAGATAACTCAGTGCTTTTTGGCTTTAATTTTTATAATTTACCCAAATTGAGAAGGTTATAAAGTACCGATACCTCCACAAAATTGTATAATTGC # Right flank : TATTTTATAAATTTAGAAACTAATATAGGACAGTACTGAGTTACTGTCCTATTTTTATAATATATTAATGAAATAACTCTAAAAAATCTCATTTTGGAAAAAGAAGATAATTGAAATTGTATTCATAATATGATAGAATACATATGTATAGTAACTATTGTTAGACAGAGTGTGGCTTTTGCTTAGAAAAGCAAAATATTCATACAAAACTTTAGATGTACATAAAGATAAATTTTTATATAAAGAAGGTATATTATGCGTTCAGATTTAATTAAGAAAGGCCCTACAAGAGCACCTCACCGTTCTCTTTTAAAGGCTATGGGTATTACAGAAAGTGAAATGAAAAAGCCTTTTGTTGCAGTTGTTTCAGCTAAGAGTGACTATATCCCCGGTCACAAGCACTTAGATGATATTGCTGAAGAAGTAAAGGCAGGTATTCGTAATGCCGGTGGTGTTCCATTTGAATTTAACACAATCGGTGTTTGTGACGGTATTGCAAT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATCTACATACACAAGTGGGTTGCCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 728-428 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPFK010000183.1 Ruminococcus sp. 1001270H_150608_F2 NODE_184_length_2050_cov_19.7799, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 727 37 100.0 29 ..................................... TACTCCTTTCGTCTGATTAAAAACCGTTA 661 37 100.0 29 ..................................... AGTTTGTAAATAGTCAATAAAAGTCAATA 595 37 100.0 28 ..................................... GTAAGCTGTTCAAAACTCTTTCATCACA 530 37 97.3 29 ....................................G TCTAACAATGACTGAGTGTGAAGGCTGTT 464 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 5 37 99.5 29 GTTTTAATACCTTATGAAATTACACTACTCTCAAACT # Left flank : AATTCATAAAGTCTGCACATTTCCTCTTTCACGGCATAACAAACAGCAAGGTCGTGATGATCTTGCAGAATAGATTGTAATTGCTCGGTATGTTATCCGTGTTCCTGGATATTTGAAAGGTACTTCTTTTGTAAATGTTTCGTGGCAACAGTTGCATTGATATCTATGGATAAAGAAGTTCCATATGTGTGTAGTACCTCTCCATATTGGAATATCTTTGAGTTTGACTTGTCCGTTTTCATAAATATACACACTGCCTCCACAATAAGGGCACCGAACTGTCTGCGCTGACCTTATGCTTTCCAGAAACAGTATGCTTTTATCTTTTTAGGACTGATTCCTATATGTGTTCCTTTAAATCCTTGACTTTGATATCATCTAAATAGAGCATAGGTTTCTCTCCTCCATTGTTTGTCTCTTCAACTACAATTTTGGAGCTTCCTATGCTCTTTTTCAATATTTATTTTTGATTATCCCACATTTTTCCGTGATGAGGGAAA # Right flank : TGTTCTAGTTCAGAAGAAACTTTTTCCATTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTACCTAATCGGCTATAGAGCCAGTTGGTTTTAATACCTTATGAAATTACACTACTCTCAAACATTGGCTTTCCACAATGTTCACATATCCAAGTTTTAATACCTTATGAAATTACACTACTCTCAAACACTCTTGTATTGAATTTTATATGAAATAAGTTTTAATACCTTATGAAATTACACTACTCTCAAACTGCATAAGCATAATTTGTCAATAGTTTTTGTTTTAATACCTTATGAAATTACACTACTCTCAAACCTCAAATAAAATGCACCCACTACATGT # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATACCTTATGAAATTACACTACTCTCAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //