Array 1 47677-43260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXCG010000003.1 Prevotella nigrescens strain SCHI0028.S.5 Contig_3_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 47676 37 100.0 33 ..................................... GATTTCTCACGTTTAGCCTATATGGACGTTGTT 47606 37 100.0 33 ..................................... CAAAGAGGTCTTCGACAGCAACAACAGCGTAAA 47536 37 100.0 31 ..................................... TTTTTTAATCTTGATAGTAATTATATGATTA 47468 37 100.0 33 ..................................... TTTACTTTTTTTGTTGATTTTGTCATAAAATTG 47398 37 100.0 35 ..................................... ATGATAATAGCACGAGCATACATAACCATAACCAA 47326 37 100.0 36 ..................................... CACGGGACTTCTTCTGCTTGTTTTCATTTTGTTTTT 47253 37 100.0 37 ..................................... CGTGTTGTCGTGTAGTCAAAGGAGACAGTCAAATATT 47179 37 100.0 37 ..................................... AACACAACAACCTGTTAGACCAACTAAAATCGGAAAA 47105 37 100.0 37 ..................................... TTATAATTATTTAAGATTATAAACAAAAGTATGGAAG 47031 37 100.0 33 ..................................... TCTTCATTAGTATTAATATCATTTTGAGATTCT 46961 37 100.0 33 ..................................... GATAAACATCATTTGGAATAACGTTCTCTACAT 46891 37 100.0 36 ..................................... CAGTAATTCCAACACTAAGAGCTGGAATAGCTGCAA 46818 37 100.0 36 ..................................... CTTCATCATCGCGAAGTTGAGCCACGATACTAAAGA 46745 37 100.0 34 ..................................... TTGAGAAATGATACTAAACAGAGATACGAAAACG 46674 37 100.0 36 ..................................... ATGTAATTCTCTTGTGGTACAACATTGACAGACTTG 46601 37 100.0 34 ..................................... CCACCTGCTCCAATCTTCAACAGACTACAAGCCC 46530 37 100.0 35 ..................................... CCATGGATTACGATACTCTGTACCCTCTTTGACAT 46458 37 100.0 37 ..................................... ATTAATTACATATTTCATAAGTTATAGTTGATGTTAG 46384 37 100.0 36 ..................................... TTACGCTCTTATTACCAGCCTTAATCAAACTCTCGA 46311 37 100.0 37 ..................................... GGTTCTTTACTGCCTTTGCACCATTCTTCATCAAACT 46237 37 100.0 34 ..................................... TAACACACGGCGAGTACTCATAACCTGTTTCGTC 46166 37 100.0 34 ..................................... TCCAACTTACGGCGTTATCGTCGGGGTTCTCAAA 46095 37 100.0 37 ..................................... GGCAGCCCATTAAGCGTTAAGCCCTCATCAGAGAACG 46021 37 100.0 34 ..................................... CCGGAAGCCCCCCGATTGCCGTCCAGATAGTACG 45950 37 100.0 34 ..................................... TTTGCTTAACTCAACGCCTGCAAGCTTTGCACCT 45879 37 100.0 35 ..................................... AGAAGTCGCTCCAATTAGGCGCAAAGCTCCAACTT 45807 37 100.0 36 ..................................... TCGTACAGCAAGTTATATAAATCTTCTGGCAATCCG 45734 37 100.0 39 ..................................... TGCTTTCTTAATACTTACATTTAACATAATACATTATAA 45658 37 100.0 34 ..................................... AGCAAAGCACTGCTCGTTAGTTAATTCTTCAATT 45587 37 100.0 31 ..................................... TTTATAAGCTTTGTCAGAAATAGAGAATAAG 45519 37 100.0 34 ..................................... TCGTTTTGCATGGCGAAAACGGTTGTCTTGTACG 45448 37 100.0 31 ..................................... ACCAAAGAACAAAAACAGAAATATATCTCCT 45380 37 100.0 35 ..................................... CCCATTGCAAAATCTTTGCAGTTGGCGTACCAATT 45308 37 100.0 35 ..................................... TGATGCTTCTGATAGTTTGGTCGCCAATGTTTATT 45236 37 100.0 33 ..................................... AGTATTTCTTAATTTTTTACGTAATGATTTTTT 45166 37 100.0 37 ..................................... CAGACCTGAAAAACCTAGGAAAAGCAAGTACAGCTTT 45092 37 100.0 37 ..................................... AATTAATACTATTTTTTATGTTACATTTTTTATTTCT 45018 37 100.0 33 ..................................... AAAGTATTAGATGAAGTTGAGAAAGGTCCAGAA 44948 37 100.0 36 ..................................... ATAACTCTGTTAAGTGGGAGAAGACATTTAAGCCAT 44875 37 100.0 33 ..................................... ACTGCTACCTTTGCAGCGAAAACGTTTAGTTCT 44805 37 100.0 38 ..................................... TCTACAATTTGTGAATAGTTGTCCGTATATGAGCCGTT 44730 37 100.0 38 ..................................... TTCTTAAAAAAGCTTTTTGCCGTGTGCTTTGGCTGGTT 44655 37 100.0 34 ..................................... CTGTCAGCATTGCTGTAAAAAATAAGAATGGTAG 44584 37 100.0 35 ..................................... CATAATCTTTTTATTTTTGGGTTAAAATGATAGAG 44512 37 100.0 33 ..................................... TTTGTACCTACTCCTCAAAATCCTTGGAAAACT 44442 37 100.0 37 ..................................... CTTACACCTGCCTTTACATCTCTCTTAATGTTTTTTC 44368 37 100.0 34 ..................................... TAATGTGAAAACGTTGTTCTATTAGCTTTTCAGG 44297 37 100.0 33 ..................................... TCTGACCTATTGTCATATCGTCCAAATTTTCGG 44227 37 100.0 36 ..................................... ACCTTTTAAAGCACCTTTTATTTCAATTTCTAAATA 44154 37 100.0 32 ..................................... ACATAAGCGAGTCTGAAATATGCACTTTTACG 44085 37 100.0 33 ..................................... TAATTCCAACACTAATAGCAGGAATAGCTGCGA 44015 37 100.0 37 ..................................... TATATACTTCCCAGTCTTTGGGTCATATACATGCTTT 43941 37 100.0 35 ..................................... TTCATAGCCATTGTCTTTTTTTTAACGTTTTTTAT 43869 37 100.0 33 ..................................... TTCAAACTTGCAAGTACTCGATGGATATCGTCC 43799 37 100.0 36 ..................................... TCAGAATATGATTAACTGCGAAACTTGCACGTTCAT 43726 37 100.0 35 ..................................... AAATGGAAATCACTTAACGAAATCTTAATCTTTTT 43654 37 100.0 36 ..................................... CATTTATAATACTTGAAATAGCTGGCTGTGAAACAC 43581 37 100.0 35 ..................................... ATATTTGATGTTTTAAGTGAAAAACTTTTATTACT 43509 37 100.0 34 ..................................... TTCGACAGGACTTTTGACTTAACATTTCAATATA 43438 37 100.0 33 ..................................... TTCACCCATTATTCAGTTAATAGTGTTTCTATC 43368 37 100.0 35 ..................................... TGTAATACGGAGAAGCTCCTACTAGAATTAAACCA 43296 37 97.3 0 ..................................T.. | ========== ====== ====== ====== ===================================== ======================================= ================== 62 37 100.0 35 CTCATTGAGTATATTCCATTACAACAAGGATTAAGAC # Left flank : AATAAAAAGTAATCTGGCAGAAGTGCAGGCTCTTTACGATAATAACGACAGCATTATTGTTTGTCCTGTATCTACCGACCAGCTAAAGGCAATGAAAGTTATTGGCGAAGATATTAATATTGATGTTATACTTCGTTCTAACAATACACTTTTCTTTTAGGCGTATTCAGTAAAATCCACATTGAGATTAAGTAGGTGTAACTATATTTTCTCTTTGTGTAGTTTTACTTTTGAAACTTCTGTTTCGTTTTTTCTGTTGTATAGCTTGCTATATATTTTCAGGAAAATGAGCTTTTTTCATCTGAAACGCAAAAAAGTATAATAAAAGTGCTTTTTAAAGCATATCTTAACAAAGATTTAACAGCGTTCTTTGACATTATGAACAAAAATATGTACTTTTGCACTCGCTTTTGAGATACTTAATTTCTGTTAAATAACAATAGCTGTCATCGAAATTATAAACCAAAATGCTTTATATAAAGGATATGTAAGTCTTTGCT # Right flank : AGCTACAATAACAAAATCAGAAAAATCTCCCAATAAACTTCTATTCAATCCCTTCTGTTCCATTACAACAACGGCTCTGCAATTAAGTTGCAGAGCCGTTGTTGTAAAAGTATTTCTTATCTTATCGGTCGATTTACGCATTGTATTCTTTCCCTCTCGACCGCATAACCGACCATATACCGAGTGCTATAAACGGTATGCTGAGTATCTGTCCCATATCGATTGGCAAGCCTGCCTCGAAGTCTACTTGCACTTCCTTTGTGTATTCGATGAAGAAACGGAAGGTGAAAATAAGCGCAAGGCATAAGCCGAAGTAAAGTCCTGTACCCACTTTCTTGGGATATTTCCTATAAATAAGGAAGATAACCCAGAAGAAAACAAAGTAGGCAATCGCCTCATAAAGCTGTCCAGGGTGGCGCGGATAGGTATCAACATCGTAGAAAACAAACGCCCAAGGCACATCGGTTACCTTTCCGATAATCTCCGAATTCATCAGATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATTGAGTATATTCCATTACAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 66626-73278 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXCG010000005.1 Prevotella nigrescens strain SCHI0028.S.5 Contig_5_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 66626 47 100.0 30 ............................................... TTAAACCAAGCTATTAACTTATCCACTTCA 66703 47 100.0 30 ............................................... CATAATGAAATATTATTTATATAGAGTAAA 66780 47 100.0 30 ............................................... ATTACAGGAAATACTCGAATTAGAGGACAT 66857 47 100.0 29 ............................................... TGAATACTTACACAAGGTTAGGTAGTCGT 66933 47 100.0 30 ............................................... TCTTTGCACCTTTAGCTTTACCACTTGCAA 67010 47 100.0 30 ............................................... CAGTCTTCGCAGCGTCTGCAATACCGCCAA 67087 47 100.0 30 ............................................... TTCAAGCGGAGAAACCTGATTGGCGCTATA 67164 47 100.0 30 ............................................... CTACGTGAATATGGTCTTTTTCTAAAACCA 67241 47 100.0 30 ............................................... ATTATGATAAGACAGTAGTCTGTACTAGTG 67318 47 100.0 30 ............................................... ATCAGCAGAGATGACGAATCCGATGAAGCT 67395 47 100.0 30 ............................................... CAGTCTTCGCAGCGTCTGCAATACCGCCAA 67472 47 100.0 30 ............................................... TTCAAGCGGAGAAACCTGATTGGCGCTATA 67549 47 100.0 30 ............................................... CTACGTGAATATGGTCTTTTTCTAAAACCA 67626 47 100.0 30 ............................................... ATCTCGTCTTACCATTTCTCTTGCCCGATG 67703 47 100.0 30 ............................................... CGAAAACGGAACAAAGACTTCCAAGATACA 67780 47 100.0 30 ............................................... ACTTTGACGGTGAAGAAGCACTGCAAGTAT 67857 47 100.0 30 ............................................... CCATTTTGTAAAGTGTCTTTAAGTGTAACA 67934 47 100.0 30 ............................................... GTTTACGTCATTTTGAAAAAATACAATAGA 68011 47 100.0 29 ............................................... TATTCATCGATATCGTTCATGGACGCTTC 68087 47 100.0 29 ............................................... GCTACCTTTCATGTGCTTACCATCGGTAC 68163 47 100.0 30 ............................................... CTAATTTCAGAGCACAAACGCTGATAATAA 68240 47 100.0 30 ............................................... CTTCGCCTGCTACGGGCGTAGGAACGCTCA 68317 47 100.0 29 ............................................... CTACAAGCAGTACACCTGCAACGGGCTTT 68393 47 100.0 29 ............................................... ATTCTCGAAGAAAAGCCTAAAGGAAATTG 68469 47 100.0 30 ............................................... ACGCAGCCATGCTCGCCGATGCCGACAAAG 68546 47 100.0 30 ............................................... GTGGCTCTTGAGTTTGATACTTGTCCTACT 68623 47 100.0 30 ............................................... GCACAACAGGAAATCCATAAACTTGAAGTT 68700 47 100.0 29 ............................................... TGTTAAGATATGAACACCATGCCAAATCT 68776 47 100.0 30 ............................................... TGCTTTCAGGAGCAAATGGAGTGATAGACA 68853 47 100.0 31 ............................................... AAGCCTTAGTAAATATTGATGAAGATATTCA 68931 47 100.0 30 ............................................... CTGTTCTCGAACAACGAGTTAATACATTAA 69008 47 100.0 30 ............................................... GTTGTCAATTTACGGCGCAATACGTAAAGT 69085 47 100.0 30 ............................................... TTCGCTCTCGATAAGTTCGCTGCCTCTGTA 69162 47 100.0 30 ............................................... TGTCCGACGATAAGCGATTGAAAATTACCA 69239 47 100.0 30 ............................................... AGATACTGATGTTTTAAATTCGTTTCATCA 69316 47 100.0 30 ............................................... CGTCCGCAATTGCATTAGCCAAATTAGCCT 69393 47 100.0 30 ............................................... TTGTGAAACTATAAGCTGAGATTGTTGGCT 69470 47 100.0 30 ............................................... CTATCAGAGAATAACTCACTAACTTTAGCA 69547 47 100.0 30 ............................................... CTTTAATTGTCGAAAGTGGTCCATAAACAT 69624 47 100.0 30 ............................................... ATTATTTATTTTAAAATGATAAGCAATATT 69701 47 100.0 30 ............................................... TTTGACAAAATAAAGTCCTTCTCCTGCTTT 69778 47 100.0 30 ............................................... CTACCAACGTATTTATAACGACTTTTATCG 69855 47 100.0 30 ............................................... TTCGCTGCTCACCAAATTCAAGCTCAAGCC 69932 47 100.0 30 ............................................... ATCGTCGCGAATTCTTTGCTGCAGAAAATG 70009 47 100.0 30 ............................................... TTTTCCAAATCAACAGTACGCTGTGCCGCA 70086 47 100.0 30 ............................................... CCCCGAGGCGTTCCTCCGCCAGCTCCATGC 70163 47 100.0 30 ............................................... TACCTTCACCATCTGTTGGATTCTCTGCAC 70240 47 100.0 30 ............................................... TTTTACGAGTTGATAAAAGCGAGCGTATGT 70317 47 100.0 29 ............................................... GTTGTTTTTTTATTAGACGAGAGCCGTGC 70393 47 100.0 30 ............................................... AAAAAATAAAATGTTTAAACGGCGCAAATT 70470 47 100.0 30 ............................................... ATTGTGGCAAGGCTCTTGCAGTAGGAGTTG 70547 47 100.0 30 ............................................... TTAGTATTAAGCCTGCCAGTCTGAGCGTTA 70624 47 100.0 30 ............................................... TTGCGCCACGCTGTTCTCAACAAGACGATG 70701 47 100.0 30 ............................................... TCTGGTAAATTAAATATACCCTCGTTATAC 70778 47 100.0 29 ............................................... CCAACGTGTCGTTCTTAAACTTAAATTCG 70854 47 100.0 30 ............................................... TGCAATGTATTACTAAGTACTTTAGCTGCA 70931 47 100.0 30 ............................................... ACCTACCAAAACACCTGTAAGCTGGTACAG 71008 47 100.0 28 ............................................... GTGCAGCCTACTTGGTTTATCGGGTGAA 71083 47 100.0 30 ............................................... TGATACAAAGGCATACCGTAAACATCAACA 71160 47 100.0 29 ............................................... TGTCACCAGTAGATATACCACCATGATGC 71236 47 100.0 30 ............................................... TGTAAGCATTAGTATTGGCATTCATTCTAT 71313 47 100.0 30 ............................................... CAAGTCTTCAAAGGATTTGCAAGGCAGTCA 71390 47 100.0 30 ............................................... CTGTCTTCGAAGGTTACTATGGCTTCGGCT 71467 47 100.0 30 ............................................... TGACAACGACGGAAGCACAGAAGATAGCGG 71544 47 100.0 30 ............................................... GGAGAAAATAATATCCTTTTTTATTTGGTA 71621 47 100.0 30 ............................................... TTACACGCCGACAGGTTGCCAACCTCGTGG 71698 47 100.0 30 ............................................... TGACGAGATGAAGTTAAGACATTCTTATGT 71775 47 100.0 30 ............................................... GTGCCTGCCGTCAATGCCTGTGTAGCTGCA 71852 47 100.0 29 ............................................... ACAAGGCGAAAAATCGCTACCACTCATGG 71928 47 100.0 30 ............................................... CTACTCAACGGAATAGTCAGTTGAAGAATA 72005 47 100.0 29 ............................................... AAACGAATAGGCAGAATAACGAAAGTGTA 72081 47 100.0 29 ............................................... CTTGCCAAATGCATGCCACATAAGACTGT 72157 47 100.0 30 ............................................... GTGTCGGACAAACTGCCGACTGTCGATATT 72234 47 100.0 29 ............................................... GTGCTCTCTTCATGGAAGCAGGCACAGGC 72310 47 100.0 30 ............................................... GCACCACCAATCAAACTGCCTAAGACACCA 72387 47 100.0 30 ............................................... AACACTTCGTTAATTACTATTGTATTATCC 72464 47 100.0 30 ............................................... TTTGACAAAATAAAATCCTTTTCTTGTTTT 72541 47 100.0 29 ............................................... CCAGGTCCATACTCTCCGACAAAGAAGTA 72617 47 100.0 30 ............................................... GGGAAGTATCTATTTTCAAAAGATAAGGGA 72694 47 100.0 30 ............................................... TTGGCGTTGTCCAGGCATTAAGGCTACCGC 72771 47 100.0 30 ............................................... GTGCAGCTTGCATAGGCGCAGCATTAGCAC 72848 47 100.0 30 ............................................... TAAAGTACTATCGTTACGGGGCTATGCAGC 72925 47 100.0 30 ............................................... TTGCATCGCATGGGTATCTACGCAAAACTT 73002 47 100.0 29 ............................................... TATACCAGTGAATAGCTGCGAAGCCAACT 73078 47 100.0 30 ............................................... TCTCCATCCATTTTTAAACGTTCAAATATA 73155 47 100.0 30 ............................................... TTGGCAAAATTGCTTTCCCAAACTTTGATA 73232 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 87 47 100.0 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGCAGACACAGC # Left flank : GGAACACACAAGACCGTGAAGGGCTCGTGGCCAGGCGACGCCGTAACAACAACCGAAACGGCAAACGGCAAGAAATGGCTTGTGAAGGAATTTACCATTACAAACTCTGACGACATCGTGAACTTTGTATTCAGCGTAGGCACAGGTTCGCCACAGACAGTCGATATTCAGAACATAAAGGCAACCACCTTTATCAACATATCAAGCGAGAAAGAAGGTGGAAAGAACAAAGTAAACGTTGTTTCTACGGGCATCGACAACGTCGTTGCAGAACACAATGGCAACAACGACCCTTACTACTACACACTTTCAGGACAGCGCATAACCAAACCAACCCAGCGTGGCATATATATCCACAACGGAAAGAAAGTACTGGTGAAGTAACGGAAAAGAAGAACGAAACAGCTACGGCAGCCTTGCATTCTTCTTGCAGAGCTGCTGTTCTGTTTCTATATATTAGCAGACACAGCAAATTTATCATCGAATGATGCGTTGGGTTA # Right flank : CACAAATAGCCTAATATGGTGATATCCAGCGATTTTACGAAGGCTTAGAGAAAAAGAAAAATGCAAGAAAGAATAGAGTCACACTCGGTAAGAATGGGACTTTATTCTTTCAATAACGATATCCAGCTTTATAAATAGTAACCACTTTAATGATATAAAAATAAACAAAAGAGAGTATCCTAAAACGTTAGTTTCAATGCACTCTTATTTTTCTTATCCTTAAGTTTTATAACTTTAATCTCTGTATGCAGACATAAAAGAAAGAATAATCTTTTAAGTGCTTGGTGCAAAACAAGTAAGATACTTTCTCGTTGCTCCACTATATATTGCAAGTTAATTATTTTTTGGTCCTTTATAATAGGGATCGAATTCTATGACTATGGTTGTTTTCTCTTTGACAGGACGACCGTTCTTTAATGCAGGCGTCCATAGTGGCATGTGTTCTACCAACCGAATGGCTTCCTTTCGGAAATGTTCTGTGGCAGCTGCCAATACTTCAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGCAGACACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //