Array 1 2-750 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLFO01000227.1 Acinetobacter baumannii strain ABBL067b contig-3000076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 2 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 62 29 96.6 31 ............................T GCAGCTACTCGACATGTTGGTAGGGCAGATG 122 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 182 29 100.0 31 ............................. GATTGAGGCGATTTTTATCGCGGACATTGCC 242 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 302 29 96.6 31 ............................T CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 362 29 93.1 31 A...........................T TATTATTAAACGGGAAAAGTATATTCTTGCT 422 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 482 29 100.0 31 ............................. TCATCAATAAGTTGGCCTTGATTTAAATAGT 542 29 100.0 31 ............................. GATACAAACGAGTTCGCATCTCGACCAGAAG 602 29 100.0 31 ............................. TTATCCAGATAAAACCATATCTACAAAGTGG 662 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTATTG 722 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 13 29 96.8 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : TG # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACAAAAATCCTAAATAATTGATTTTATAATTGCTTTTTCGGCATATAACATGCTGGTATAACTCATGTATAACATTTAATTTTGATTAAGTATGATTAACAACAGTTTCTTTTTTGTTCAAGTCCGACTATAGGAGTTGAACTCATTTTGAAAAATTCTAGGCTCTTCCCACTTTTATTTTAGCTTACTATAAAGGTCAATATAAAAATTATGATAGAAACGCGTTCTCTTTCTCTTAATTTTAGGGCTTACAACTGAGCTGTATGTAACCGAAGTTTCCTCTATTTCTTCCTCAATTAATCCTACAACTTCTAAATCTTTGAAGTCACTAACTAAAAGATTTTCAAATTCCCAATATTTGTTGTAATCAGTGGCATCTTTTGGCAATCCTTCACAAGGTATGGATTGTCCGCGGAGCCT # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 98-2400 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLFO01000009.1 Acinetobacter baumannii strain ABBL067b contig-1000005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 98 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 158 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 218 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 278 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 338 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 398 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 458 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 518 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 578 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 638 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 698 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 758 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 818 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 878 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 938 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 998 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 1058 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 1118 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 1178 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 1238 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 1298 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 1358 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 1418 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 1478 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 1538 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 1598 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 1658 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 1718 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 1778 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 1838 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 1898 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 1958 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 2018 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 2078 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 2138 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 2198 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 2253 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 2313 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 2374 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 39 28 98.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : AGAGACAGAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTAG # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3634-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLFO01000361.1 Acinetobacter baumannii strain ABBL067b contig-6000074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3633 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 3573 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 3513 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 3453 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 3393 28 100.0 32 ............................ ATGAACTTTTAATGGATGCATGCGCCGCCCAC 3333 28 100.0 32 ............................ ACGAACAACGATAATTTGGAATACACGCTCAT 3273 28 100.0 32 ............................ TCAGGAGAAAGATCGTTCAAAAGCTCAAAACC 3213 28 100.0 32 ............................ TGAAAGTTTTGATATCCACTCTGCTGTTTCAA 3153 28 100.0 32 ............................ AGATGGTAAGAAAATTATTGAGTCTGGAGACA 3093 28 100.0 32 ............................ CGACAGTCCAGTTGATCAGATCTTGATTAGAC 3033 28 100.0 32 ............................ AATGACATGGTTCAACAATTAAATTCATCTCA 2973 28 100.0 32 ............................ GTTCTTTTCTGCAATATGTGCCATTAGGTATT 2913 28 100.0 32 ............................ ATTTTAGATGAAACAAAAGATAGCAGGATTAT 2853 28 100.0 32 ............................ AGACCAAGCGGATTGACCGTATTGATAAATAA 2793 28 100.0 32 ............................ TTCTGCAATACAAATCACTGGATCAGCCAGGT 2733 28 100.0 32 ............................ TGAGTCTTTGATTTCCCAAATATTACTTGAAA 2673 28 100.0 34 ............................ CCTGAAAAATTTCACTGTGTCCATTTCGTTATTA 2611 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 2551 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 2491 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 2431 28 100.0 32 ............................ ATTATCAGATAAGCCTTTTATGAATGATCGTT 2371 28 100.0 32 ............................ ATTAGCTATTAGCTTTTTGGCAACAACAACAG 2311 28 100.0 32 ............................ AGTTCATGAAAACAGCTTTAAAAAGAAAGCAC 2251 28 100.0 32 ............................ TCCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 2191 28 100.0 32 ............................ TTGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 2131 28 100.0 32 ............................ TGGTACGACAACTACGAAAAGCTGAGCAAAGT 2071 28 100.0 32 ............................ TCAACTTAAATGGATGCTCCCCGCGGTGAATT 2011 28 100.0 32 ............................ TTGATTGCTAGACGGATTTTTAGGCAGATCAT 1951 28 100.0 32 ............................ GAGTTTAATGCGCTATATGGCGACGAGGATTT 1891 28 100.0 32 ............................ CATGCAATCGCGTTGATTACCGCAGCTTCGAA 1831 28 100.0 32 ............................ ATGAGCCGCAACCATACGGTCTATGACTTCCA 1771 28 100.0 32 ............................ ATAGCGCCCTGCTCTATGTTGTCACTTCCGAA 1711 28 100.0 32 ............................ TCCAAGTGAATCGGCTCCTAATGCAAATGACC 1651 28 100.0 32 ............................ TGAAAACCAATATGCTGCCTAATTGCCATAAG 1591 28 96.4 32 ....A....................... GATCTGCGTCCATTTGTACTTGCTGCGGGTGC 1531 28 89.3 32 ....T.......AT.............. ATATACAGCACCGCTTAGTGCGACGCGGTCAT 1471 28 89.3 32 ....T.......AT.............. GCCCACAGGTTGAGCATCAACGGCCATCGAGA 1411 28 89.3 32 ....T.......AT.............. ATCATAGAGCTCACTTTGTCGTTGAGCCTGCA 1351 28 89.3 32 ....T.......AT.............. AGAAGGCCCGTAATTTAACTGTAAGCCGTGGT 1291 28 89.3 32 ....T.......AT.............. TCTTCCTGAGTTTTAATCCCATTTGCCTTACA 1231 28 85.7 32 ....T.T.....AT.............. CATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 1171 28 89.3 32 ....T.......AT.............. TTCAGGGAATTATCGTGAAACTTTCATTGACT 1111 28 89.3 32 ....T.......AT.............. TGCACCAGCTGCTGGCTGGTTGAAATCTGCAA 1051 28 89.3 32 ....T.......AT.............. AGAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 991 28 89.3 32 ....T.......AT.............. TGTTTCAAAAGCTACACCATCAAAACCATTGC 931 28 89.3 32 ....T.......AT.............. TATTTAAGTAATAAGTTTAATAACGACCTAGT 871 28 89.3 32 ....T.......AT.............. AACACGTTCTCTATATCGCTGTTTGCGGTCAT 811 28 89.3 32 ....T.......AT.............. TTCAGTTGGATATGCCTTTGATACCAAGAAAC 751 28 89.3 32 ....T.......AT.............. GCCTGCAGACACGGATTTACGCAGCTGATCGA 691 28 85.7 32 ....T.......AT...........C.. TAACCAAACTATGTCATCGATCGGAGATTTCA 631 28 89.3 32 ....T.......AT.............. TTAAAATAAATGCCTGTGGTTTTTTCTTAACT 571 28 89.3 32 ....T.......AT.............. AGTTTCCGAAGTTGAATTACACTCGCCAAGTT 511 28 89.3 32 ....T.......AT.............. TAACACAGTGATTTGATTACCTTGAGCAACCC 451 28 89.3 32 ....T.......AT.............. ATCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 391 28 89.3 32 ....T.......AT.............. TCATCCACCTTTGATGAAACGGATCCACGCAA 331 28 89.3 32 ....T.......AT.............. TCTTGTGTGACGGCCTCCACTCCAGATCCCGC 271 28 89.3 32 ....T.......AT.............. TTAAGCTTCAAAAATAGCCATTGATTATAAAA 211 28 89.3 32 ....T.......AT.............. TGACAACTTTCCACGGCAATCAGGGCTTTCCA 151 28 89.3 32 ....T.......AT.............. TAAAGATGCACGTGGCCTAATGCAAGTTATTC 91 28 89.3 32 ....T.......AT.............. TTTAAAATTAGGTGCTGAGTTACCACGGCTCA 31 28 89.3 0 ....T.......AT.............. | ========== ====== ====== ====== ============================ ================================== ================== 61 28 95.3 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : ATAA # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : GTTCTTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //