Array 1 158924-165739 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024014.1 Candidatus Nitrosocaldus islandicus isolate 3F chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 158924 30 100.0 38 .............................. ATCAGCTGGTTCATTTACTTCTGAAAGTCTATATGCAT 158992 30 100.0 37 .............................. CTATTCTGATGAAGAAGGGTGATAAATTATATATTCT 159059 30 100.0 37 .............................. TTATTTTTATTGCTGTTATCTTGTTCATGCTTGCTTT 159126 30 100.0 38 .............................. TAATGAAAAGGCACTAATGTTGACATTTGTACAGATCA 159194 30 100.0 37 .............................. GGATGAGGTTATATACTATAACATGTTAGATTGTGTA 159261 30 100.0 38 .............................. AAGATGAGGGTGAATTTAAAGAGATAAAGAGTGGCAAG 159329 30 100.0 37 .............................. ACAGTACAGCAATTCTCATGTCCAACTCAGGCAACAG 159396 30 100.0 37 .............................. TTTGCAGAAGAGATAGCAAAGAGAGCAGAAGGCATGC 159463 30 100.0 38 .............................. TCCAAAATAATCTCGTACGCTGTCTTCGACGTCGTTAA 159531 30 100.0 38 .............................. TGAACATAATGTAATTTTCTATGCCTTTTAGAGGCCTC 159599 30 100.0 36 .............................. ATGGTCTTACATTCCCTTAATTCCTCTATGCTTATA 159665 30 100.0 40 .............................. CCTAAATACTTAAACAAGTAGTGTATTACAAAGTTATTAT 159735 30 100.0 37 .............................. AGTGCAGGGGGTAACATGGAATAACAAGAATAAAATG 159802 30 100.0 37 .............................. CAGGCATGGATATTTTTATGGTCATGAGTTGCTCTAT 159869 30 100.0 38 .............................. GGGCCTGAACTACCCAAAAACCTATTTCCTACAAAAAA 159937 30 100.0 41 .............................. AAGTAATAGCAAGTGTTTATTACCTCAGTTTACTAGATAGT 160008 30 100.0 37 .............................. TGTTTATTATAAGGTATGTATTCCCTACTTGAAGGTT 160075 30 100.0 38 .............................. CAAGGCTATTAAATACTTGGGATGTCATTTCTCAATTC 160143 30 100.0 36 .............................. CCCAAAAATACCCTTTTTTTGCACATGCATATAATA 160209 30 100.0 37 .............................. TTAATTGCTAAATAAGTATTTGCAGATACAAATAAAA 160276 30 100.0 37 .............................. ATGTAAGAACAGGAAGGCTCAAGAAAAGTATCAAAGT 160343 30 100.0 37 .............................. TTAATATCATCAGGCTTACTGAATCCTACTACTCAAT 160410 30 100.0 38 .............................. TGTGTATCCTGATAATGAGGTATTTGAGGAAGCCTCTA 160478 30 100.0 38 .............................. GAAGATAACAGCATCAAGTAACCTAGATTCATTCTTAC 160546 30 100.0 38 .............................. ATGCAAGAGATAATAAATGAATCCATGGATAGAATGGA 160614 30 100.0 36 .............................. TAGATATTGATACTGCTAAGGTTTATGAGTTTGATT 160680 30 100.0 37 .............................. CATTTATACATACTGTTGCCTCTACCCCCTTATCATT 160747 30 100.0 37 .............................. ATTACTCATGAAATTAGAGAAGCAAGTATTTCATGAC 160814 30 100.0 37 .............................. AAGAGAGAGTTCATAGTTCATAGCAGGCATTTAAAAC 160881 30 100.0 37 .............................. CTTGATAAGGCTATTAATCCTTTTGCCATTAAGTTGC 160948 30 100.0 37 .............................. AATACATAGGTTATAGGCAATCTGTTAGTGATTTAGC 161015 30 100.0 37 .............................. GAAGCACTAGTAACACTTGCATTATGTAGGGTTTCTA 161082 30 100.0 39 .............................. TTTGGACATGTATACTGAGGATGGTTTTTTAAGTTCATG 161151 30 100.0 37 .............................. TACAATAAAGCACTATTTTCAAGTGTTTGATAGCCCT 161218 30 100.0 37 .............................. AGATGTTAAGGATGCAATAATAATTGGGGTGATCTGA 161285 30 100.0 36 .............................. TCAATAGCGGTGTATTACCAAACACAAGCACACCCC 161351 30 100.0 36 .............................. GAGAGGGTTCATCAGACTTTACATATACACTTATCA 161417 30 100.0 36 .............................. TAATGTCGATAATAAGCATTTTTGGAATATAACTGA 161483 30 100.0 38 .............................. AAATTGAGATTAAATAGTATATGTTTGTTTTTGTTCAA 161551 30 100.0 38 .............................. TCATTATTGCTAATGTGACCCAGCCAAAGAAATCTTTT 161619 30 100.0 36 .............................. GAATTATTGTCGTCGATCCACGTATTACAGAGTTCG 161685 30 100.0 37 .............................. CCATTTATCACATATTGAATTATCTCGTTCTCCTCAA 161752 30 100.0 36 .............................. TCGTTCTTTATGTTACCCTCGCTATCAATAAATAAT 161818 30 100.0 37 .............................. TTCTTTGTTTATGTACTGTAAGTGTATTTTGGTTTAT 161885 30 100.0 37 .............................. GCTTATACATTCCTAATAGCTCGCTGACTTCTGCACT 161952 30 100.0 38 .............................. TGGCTTGCAATCGTATACGCAAAGTTACCAAGATTCTC 162020 30 100.0 40 .............................. AAGCCAATAAGGATAATATCAGATCAACGCAGTATAAATT 162090 30 100.0 37 .............................. GACATACAACTTGACGCGGGCAATTACGCACTTATAA 162157 30 100.0 36 .............................. GAATTATCGTCGACGAACCCTACATTACAATATTCG 162223 30 100.0 38 .............................. GAGCTAACTTACTTATCGTTACACTTGCATTACCTATT 162291 30 100.0 38 .............................. TTAGTTCACTAATATAGTCATTGAATCCCTTTCTATTC 162359 30 100.0 38 .............................. TCTTTGCCACCTCTTCCGCAAAGGGTAAGAACTGACTC 162427 30 100.0 38 .............................. CTCAGCTAGCAGATGGAGTAGTAATATCATCAAAAATA 162495 30 100.0 37 .............................. TAGCTATAAAGAATCTCTCGTAACTCTGATTCGTTAA 162562 30 100.0 39 .............................. TGGTGTACTTCTCTTGCAAATAATAAAGGTTATAAACTC 162631 30 100.0 36 .............................. TGATAATACCAATTTCTACAAGTTTAGTATCAAGGA 162697 30 100.0 37 .............................. TCTTTGATTATCTCACTCTCACTGTCAACGAATAATA 162764 30 100.0 40 .............................. TTCGACGTAATCACATTTATTAAAGCGTTGGGAGATGAAA 162834 30 100.0 37 .............................. AACTTACCGTACAAACTGTTCAGCAATAATTTATAAA 162901 30 100.0 36 .............................. TCGGAAAAGGCAGTTGCAAAGAAGGAGAAGTTTATT 162967 30 100.0 38 .............................. AAGAAGAAAGATTTAAATCCAAGCCTTCAACCTCAAGC 163035 30 100.0 36 .............................. ACTTCTCGGGGTTACTTTCTGCAAAGAAATTATATT 163101 30 100.0 37 .............................. TGTTCTGCCAACCATTCAACACTTCAACACTTCAACA 163168 30 100.0 38 .............................. TAGAGGTATTATAACCAAAGACGAGTTTTCTGAATTGC 163236 30 100.0 36 .............................. CTCTCTTACGAGTTGTCCAAACTTACCGTACAGACT 163302 30 100.0 35 .............................. AGGACAGCGTAAAGGACCTTTTTGGCTGGGTCACA 163367 30 100.0 36 .............................. TAGTGATGGGAGTGAAACTATGAACAACGAGTCTAA 163433 30 100.0 37 .............................. TTTTTCCCAATTCCTCGATCGATGTTTTATAAAAGTT 163500 30 100.0 39 .............................. CAATGATTTAACCACTGATCTCGATGTTGACTTACGATA 163569 30 100.0 36 .............................. AGTTGTATACATGAAGGTTGTAAAGCTGAGGTAATG 163635 30 100.0 39 .............................. CAGTAAGAGCCTTAACTACTTCATTCAACTTAACAATTA 163704 30 100.0 36 .............................. ATAGTTAATTTAAAGATAATATCTACAATCATAAAT 163770 30 100.0 39 .............................. TTGCCTTATATGCCTTAATGTATTCATCCTTATCCAATA 163839 30 100.0 37 .............................. CTGTATGAGTCTAACTCAAGTTTAATTGCATCAATGT 163906 30 100.0 37 .............................. TCTTGCAGTAAATTCGTGTTTAGATTTTACAGTATAT 163973 30 100.0 37 .............................. ATATTTCAACATCTCTGTAACAATACTCAACTAACTT 164040 30 100.0 37 .............................. TGTAAATCTAGTAGTATTTGTATATGTCTTTCATCAT 164107 30 100.0 37 .............................. TAGAATCTATCTAGAAATGTAAGATCAAATATTATCT 164174 30 100.0 37 .............................. CTTACTTCATATCTGCCTTCTACTTGCCACCTATCTT 164241 30 100.0 38 .............................. ACAAGAGTTGACTTACGTCGTATGTATCGTATTGGTGT 164309 30 100.0 36 .............................. TGAAATATTATGAAGGTCATATTTAGAATACAGAAG 164375 30 100.0 37 .............................. ATTTTACGAATAAAATTTATAACGGCTTTATCGAAGT 164442 30 100.0 35 .............................. TCGATAAGTGATTTAGTGCGTTTTGCTGTAAGAGA 164507 30 100.0 38 .............................. TCGAATGATATAACTTTAAAGTCGGTTGCTCCGTATTC 164575 30 100.0 39 .............................. CTGATCTACCTCTCACAAGATATGAGCATGACAAGGAAG 164644 30 100.0 36 .............................. TCTTGTTGCTTCTTCTTTACAGCACTCCAGAAATAT 164710 30 100.0 37 .............................. CTAAGAAATCAGCAAATTCAGAAATTCTGGTACACAA 164777 30 100.0 36 .............................. AAATTTAAACACACTAAAAACAGATTTCAGTTCATA 164843 30 100.0 37 .............................. TAAAACAAAATAAAAGAAGAACAAAAGCAAAACAAAA 164910 30 100.0 36 .............................. CTATTTCAACATCTCTATAACAATATGTAACTAAGT 164976 30 100.0 37 .............................. AATTTGAAAGAGTTGAAAAAAGTGCGTGCGGTTTAAA 165043 30 100.0 36 .............................. GTTTTGATAACTGTTAGGGCAATCCATGTGTTCAAT 165109 30 100.0 36 .............................. CATACCTAGATGCAGTATATAATGCCAATATCTGCA 165175 30 100.0 38 .............................. TCCTCTAGTAACATTACCTTATATTCTTTTACTCTTTG 165243 30 100.0 37 .............................. ATAAGTTAACTGAGATAATAGAGAAAGAGATGCTTGA 165310 30 100.0 37 .............................. AGTGAAATAAGTAATAAGTGGGTAAGAAGGCTATCAG 165377 30 100.0 37 .............................. GATTTAAATAGACCTGCATCTAATGATGCAGTTCTAG 165444 30 100.0 38 .............................. ATACTTGTGATTTATAGGCTCAAGTGTAGATATAGATA 165512 30 100.0 36 .............................. CAAGATTTATATAACCCATAATTCTATACTATGGCA 165578 30 100.0 36 .............................. TGTTGCTGGTAAGACTAAGGCAAAAGTAAGTATTAA 165644 30 96.7 36 .............................G AAACTGAACCTGAAAGGCAAGCATTCATTGAAAAAT 165710 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 102 30 100.0 37 GTTTGAATCGAACTATAGTAGGATTGAAAT # Left flank : TGTTTAGTAATAATATATCTATTTCTAACATTAAGTTAAATATTACTTAATCAAGTGAGTAAAGATAAACTAGATAGATGAATTTAAAAGAAGCAAAGAAGGAGAAAGGCTATGAAAGTAATAATAGTATATGATGTTAATATAGAGAGGATAACTACTATAAGGAAGATACTTAAACAATATCTATCATGGGTGCAGAATTCTGCGTTTGAAGGAGAACTAACTGAAGGTAGACTAGAAGAGTTAAAATCTAGGCTTTATGAGGTTATAGATCCTAATACTGATTCAATAATAGTATATACTATAAGCAATCCAAGATGGGTAGATAAGAGGGTATGGGGTGTTGAGAAGGGAGGTACAGATAATATCCTCTAAGTTTATATACGACTAGTCAACATTTATAAATATCGTATACGACTAGAGCTTGACTGGTTCCCCTTTGAGTAGAGGAGGGAGAGTATATAAAAGGTGAAGCGTGAGAAGGGGAGGCGCCAGGGGGG # Right flank : TGAGCAGTAAGATAAAGAGCATCTTGCAGATGTATTTGTCTGAATAGAACTTATTGAACTGATACTATCGAGGATAAGAAGATAGATAGTTATACTTCCTGCTCTGTTTGTAAGGTTGCTAATCCGAATATCTCTGGATGAAGATCATGTATTATCTCTAACTCCCTGAATACATCTATTGCAGTCTTTGTAACCTTATGTGCCTCTTCAAGGTTTACTCCTGTAACCTCTACCCTATCAGGATGGTACTTTATCATTATCTTCCTGAACCTTGAAACAACATCGTGCCATCTAGCATCTGGTGGAAGTCCTACCCCTTCCCATGTGAGCATTCCCAATAACCTATTCTTCCTCTCAAATATCCTCTCTATATCCATCTTCTCCAATTCAACAACCTTCTCTCTAGGCCTCTCAGCCTTCTTGTTGAATATAAAGTGCCATCTTCCTAGAGTTCTTGCATCCTTCTCCTCTACACTAGCAGAGATATCCTCTCCTGCTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGAACTATAGTAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 781589-786261 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024014.1 Candidatus Nitrosocaldus islandicus isolate 3F chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 781589 30 100.0 37 .............................. TCATTTTTATTGCTGTTATCTTGTTCATGCTTGCTTT 781656 30 100.0 36 .............................. AAAGCCTCTCTTACCCTTACCCTTATTGATTATTAA 781722 30 100.0 38 .............................. CATTATCTAAGAACTTGTTATTGCCTTTAAGGAACTTG 781790 30 100.0 36 .............................. AAATCAATTCAAGTAACCCAACACAACACAAAACAA 781856 30 100.0 39 .............................. TGAACTTTCTTAATGCTCTTGTCTCTATGTATGCCTTTA 781925 30 100.0 36 .............................. TCATTCTTTTTGAATTCTTGCATAAGATATTTACTA 781991 30 100.0 37 .............................. CTGTATACATGTCTAATAAGGCTTTATGTAGAAGTAG 782058 30 100.0 37 .............................. TAAGCCTCTTAAAAGTATCATAATCAAAATCAAAATC 782125 30 100.0 37 .............................. CTAATAATAGTTGACAGTCCCTATGAATCTTTAATTT 782192 30 100.0 37 .............................. TGATGTTATGCAAATCAAGCAATATCTCGATGTGTCG 782259 30 100.0 36 .............................. AGAATTCGAATTGGGGTATTGCCTTATGAGTGAATA 782325 30 100.0 40 .............................. AGCTCGTGTCAGGCATGCCATCTGCTCTCTTTGCTATCTC 782395 30 100.0 40 .............................. CGATGATACGTCATCATTCCAACGATTCTCTCTTATCATA 782465 30 100.0 36 .............................. GTGATAACTCATCCTTCTCTATCGATGCTGATGTGT 782531 30 100.0 39 .............................. TCCCATGCATGCATGCATATGCATGCATGTTCATCAACA 782600 30 100.0 39 .............................. GTGGTGGTGGTGATGTTGGTATCCTTGTGATGGCCTGAC 782669 30 100.0 37 .............................. TGCTAGGAGCACTTCCAGAAGTAGGATATTCCTTCTC 782736 30 100.0 39 .............................. AGGAAAAATAGGAAAGAGAGAGATTTAGTCGTTGTCCTT 782805 30 100.0 37 .............................. AGGTCTGCCTTCTGCTTATGCTTCTTATTTATAAAGT 782872 30 100.0 39 .............................. ACAGTTGCTACCGATCCAAATAAGGTAAAAGATAGAATA 782941 30 100.0 38 .............................. TTCAACACCATACCCATCCCATCCCATGCATGCATATG 783009 30 100.0 37 .............................. TTCTTATTTCTTATTTTTTGTTTTTGATATGGGATGA 783076 30 100.0 36 .............................. GATGTAACTCAAACTGATTTACTAGGTACAAACAAG 783142 30 100.0 37 .............................. ACACTAATACCAACACTAATACTAACAGTAACAGTAA 783209 30 100.0 38 .............................. GTGAGAGTTAAGATAAGTGAGACCAAATCAATTCTAGA 783277 30 100.0 38 .............................. ATGCCTTTACTCCACTTCTTGATGTGTATGACTTCATC 783345 30 100.0 37 .............................. TTAAGTAGAGAGATAAGGCATAATCTTAATAAATTAA 783412 30 100.0 36 .............................. CTTAACCATTCTCTAAATGCCATCTCTTTCTTAGTC 783478 30 100.0 36 .............................. AATAGAGAGGCGTATTTTACGCCTCTCCAAAAGAGG 783544 30 100.0 38 .............................. TGTTATAGGCGTTGCGCTCTTCCTCCTCCATTTCATAC 783612 30 100.0 36 .............................. TTCGAACAAAATTTTATTTTATGTCGCCAAATAAAA 783678 30 100.0 36 .............................. ATGTCCTAGCGTCAAATATGCGTAACGTAAAATAAA 783744 30 100.0 37 .............................. AGCGGATGCATGCCCCCGAATAATATGAATCCCTATT 783811 30 100.0 37 .............................. ATACAATTTCCATGTTCCTGAAAAGGATCGATGCAAA 783878 30 100.0 36 .............................. TAGATGCCTCAGCCCCAGATGCAATCCTACCTATTC 783944 30 100.0 37 .............................. TTGCACAAGCAGAGGTAAATGAGGAGTGGTTAGGGAT 784011 30 100.0 36 .............................. TGTCCATATTGGGACAAGGCAAAATTTAATATTTGC 784077 30 100.0 39 .............................. TGTATAGGATCGTGCCTCCTTAATTGCGTTCATAATATT 784146 30 100.0 36 .............................. CTCATTTGCAGGATCAATTCGCAAATTTCTAATGAA 784212 30 100.0 36 .............................. ATCTCGTTCGCCTTTCATACTCCCTTTACGACTCAG 784278 30 100.0 36 .............................. TTCCTAAAAACCTCCCTTTTCAGGACTTCTATTATC 784344 30 100.0 37 .............................. TCGCTACAAATTTATGGTGTCTTTTTTGAAAACGATC 784411 30 100.0 37 .............................. TTCCCAACTTGATCGAATTAGGCGAACCTAATTGCTC 784478 30 100.0 36 .............................. CCTGTTGAACCTGCTACTGGTATCTATCTCAAAGCT 784544 30 100.0 38 .............................. ATGCTATGAATGATGTTACTATACCTATCACTACCTTA 784612 30 100.0 37 .............................. AACACCATCCTCTTCTCTATCTTTCTATCTCGCTTCT 784679 30 100.0 40 .............................. ATGTTTGTATTAGTTTTGTATTTATTTTTATTTTCTAATA 784749 30 100.0 37 .............................. TCAATTATAAAATTGCTTAAAAAGATTATAGCACATT 784816 30 100.0 38 .............................. TTGTTTGATGAACTCTTTGATCTCTGCAGGAAGTGAAG 784884 30 100.0 38 .............................. AGAAATTGCTGAATCAGTTGAAGAAGTGATTGTGGCGC 784952 30 100.0 36 .............................. TTAGAGCATAAGCCTAAACGATTAGAAGGGAAGTAT 785018 30 100.0 37 .............................. ATAGGAGATGAGGTAATAGTGCTAGAGGAGGGTGAAC 785085 30 100.0 37 .............................. GCAGGTTCAACAATACAGTTGAAGGGTGCTCAATTGA 785152 30 100.0 37 .............................. TCTTTCATTACTTTCATACATTCTATTGCTAAACTCT 785219 30 100.0 39 .............................. GTTGAATAACTGTATATAATAGTCATCATCAACAAAATT 785288 30 100.0 38 .............................. ATAGCATAACCATACCCCATTTTTCATACCACCCCTAT 785356 30 100.0 36 .............................. TGCTCTACCTATGCCATAACGTGTTGCTACTCTCTG 785422 30 100.0 38 .............................. TTAGGGTATAGTTTGTATGCGCATCGCATGCAGTAATA 785490 30 100.0 37 .............................. TCAAATTCTACACTTGCACTTAGATCTCTAGCACATG 785557 30 100.0 37 .............................. GATTCCTCGATAAAATCGAAGAATTAGGCAAATCAAG 785624 30 100.0 36 .............................. TTTCGGTAACAGTTATACCGTAAATTGAACGAGCGA 785690 30 100.0 37 .............................. GTAGGTGGTGCTGTAGGTGAATATATTTCACCTTATG 785757 30 100.0 41 .............................. TTAAGAGGAGATAATACATGTTTTGGCTATGTAGAAGATTA 785828 30 100.0 41 .............................. TTAAGAGGAGATAATACATGTTTTGGCTATGTAGAAGATTA 785899 30 100.0 38 .............................. TGTTATACATCTTATCGCATTCCTTGCATCTTAGCATA 785967 30 100.0 37 .............................. TTAGGTAACCTAAACTTCAAATTGCATCTATAGCATT 786034 30 100.0 36 .............................. TCAAATTTCCAACATAACGTAATTTTAATATAATTG 786100 30 100.0 36 .............................. AGGTTTATCTGAGACCTAAGCCTGTCTGTGCCTTCC 786166 30 100.0 36 .............................. ATTCTTCATATCAAGTTATTATCACACTACCGAAGT 786232 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 70 30 100.0 37 GTTTGAATCGAACTATAGTAGGATTGAAAG # Left flank : ACCAATTTTGAGTCACGATCTCACTATACTACTTCTCTTACGTAGAGCGTATAATTATGAATAATCAAAAGAGTGCTATCACTGAACCCTTTAAGCATGTCTATGATTTTATAACACAAACAAAGCATTTGTGTTATGACTTATTGCATAGTCTTACTACGCTTCTCAAGGACGAATACATATTGCTTTATGAGAGGATACCAAAAGAACTCTTAAACCTTATCTTCTCTTTCTTTACCTAATAAAAGGGTACAAGATAAGATAGATTAATTAGGCAAAATGGGTATTTTATGCCCAATTAATTACACATTCATATTAGTCACGGTCTCGCTATAAAATGCGTAGAGAATATAGTAGCCATACTCATACTATAAGTTTATATATGACTAGTCAACATTTATAAATATCGTATACGACTAGAGCTTGACTGGTTCCCCTTTGAGTAGAGGAGGGAGAGTATATAAAAGGTGAAGCGTGAGAAGGGGAGGCGCCAGTGGGGG # Right flank : GTAGCTCTTTATATACTAGATATGCGAAGTAGTATTAACAGTAGTGATAGCAATATGCTAGTGCTAATGCCAAACGAGCGTATACTTATGCAGAGAGACGCTTCTATAGTTATTAAGCACAAGTATGTTAGGGCCAAGGAGGAAGGAAAGGGCACATTCTATATCACTACTTATAGGCTAGTCTTTGAAGACCACAAGAAGGGCATAATTCTGCAGGTATACCCCTCCCAGAACGAGTTGCAAGCATACAGGGTAAACAAGAGCCTGTTAGGAGGAGAGAGGCTATTGTTAGACGTGCAGAGGGTCATAGAGGGTAAGATTCTCAATGTTCTTGCTGAAGTCTCTATGCCTAATGCTAGTGAGGCTGTTAAGGCTATCGAGGCTATGAGGAGTGATTCTGTTATAGTTGCTAGCAACAAGCATACTGCTAGTACTAACATAGTTACTGACTTGGAGGAAGAAGAGGAAGAGCCTTATGACGCCTTCCTCGAGACTAAGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGAACTATAGTAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 3 1581621-1581806 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024014.1 Candidatus Nitrosocaldus islandicus isolate 3F chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1581621 36 97.2 39 .............................G...... CATTGGGAGAGTATAGAGAAGTTAAGGCAGGATATGATT 1581696 36 97.2 39 .................T.................. GTATGGGAGAGTATAGAGAATCTTAGAAGGGATATGCAG 1581771 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 3 36 98.1 40 GAAGGCTTCAGAAGGCACGATGAGGAGTTCAAGAGG # Left flank : CATTACAATACATTACGTTAGAGCAAACCAAACCTCCAACATTAAATAATAACCATGCATTAAACATGATAACATAAACTACTCTCTATAGAGCCTACACCAATAATAGCAACGATAATAGATAGCAAGCATACCCAACATACAATATAATATCTAGAAGAGCAATAGAATAACCTTTGATGTTAACTAACCTCAGCATAATGCTGTAGAGAATATACTCATGGCTATAATCAAAGCCTAACTGCTCATTACCTTTATTATTATATTACCTTATATATTGCTCCTTACCTTCTATTCTTATGCTAAGCAATGAGGAGTTGAAGAAGAAGATATTAGACATGCTTGAACAGGATAAGGAGTTTAGGCATGCAGTAGCAGGGGCAATAGGCTACAAGGAGATACTGGATAGGATAGCAAGGGTAGAGGAAGAGTTAAGGAATCTTAGAGAGGAGACTAATAAGCTTAGAGAGGAGACTAATAGACTAAGGCAAGATATGCAG # Right flank : GATAGATAAGCGATTAAGATCCATAGAATCATACATGGAAAAGACATCTTTAACACTTGAAGAGGAGGCTAGAGACGTTATCCAGTATATGCTAAGGGAGAAGGGGCTAACATTAAGCATATCTAGATTAGAACTACCAGATATTGAAATAGACATATATGGTGTAGATACAGAGTACTGTATAGTAGGAGAGGTTAAGACTAGGGCAAGTTCAAGTCTGGTTGAGAGTGTTGATAAGGATATAGAACTATTATGCTCAAGATACCCTCAATATATAAGGAAGAAGTTGATAAAGGTGATATATGCTATGCAGATTACTCAAGATGCTCTTAATGAGGGTAATAAAAGGAACATATGGCTTGTAACAGCAAAGGGGGAGCTTACTAGTTTAAAGATAGTTGATAGGTAAGGTAGTTATACCAATAACTCTACGCAAGGTAGTTATACCAATGATTCTACACTCCTACCTATATATAGGGTTGCTATCTGCTCTAGCATAT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGGCTTCAGAAGGCACGATGAGGAGTTCAAGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA //