Array 1 163139-166522 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOCD010000001.1 Rubrivivax benzoatilyticus strain JA2-Mal 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 163139 37 100.0 34 ..................................... CGCGCCAACGACAAGAGCATCCAGAGCCTGACGC 163210 37 100.0 34 ..................................... GTGTACAGCTCGCGCTTGCCGCAGCTCGGGCAGG 163281 37 100.0 34 ..................................... AGCCAGGGGGGCGGCGTCGCGCCGGGCGAGCTGT 163352 37 100.0 33 ..................................... GCCGTGCGCTTGCTCAGCCATCAGTACGCGACG 163422 37 100.0 34 ..................................... AAGAACCTGTCGATCTACTGGCAGGAGGGCAGCC 163493 37 100.0 36 ..................................... CTCGTGACCCAGCGGGCATTGGAGCGGTAGCGGGCG 163566 37 100.0 34 ..................................... ATTCCAACGGCAGCGAAGTGCTGCTGGCCCTAAG 163637 37 100.0 34 ..................................... TTCAAGGGCGTCATCGACGGCGTCGACGCGCTCA 163708 37 100.0 35 ..................................... AAGCAGGACGCGACCGGCGGGCGCACGATCGCGCT 163780 37 100.0 33 ..................................... TTCCCGGTGTTGCCGTGCGGCTGGCCATGCTGG 163850 37 100.0 34 ..................................... TTTCGCGCCGCGGCCGACGGGTCGATGAGCAGTA 163921 37 100.0 34 ..................................... AGCACAGCATCAGGGGACCTCAATGAACGACCGC 163992 37 100.0 36 ..................................... CAGTGCATGAAAGCCGGTTCGGTCGCGCGTGCACCT 164065 37 100.0 34 ..................................... ACCGAGATCTCGGTGTTGTCGCCGGCCTTGGCCG 164136 37 100.0 34 ..................................... GTCTGGCGCCGGCAACGCCGGCGGTGGGCGGGGA 164207 37 100.0 35 ..................................... AGCCCGACACGGCGAAGCGGCGACGCCGGCGTGGG 164279 37 97.3 35 .........T........................... GGGAAGTGATGCGGCGCCACAAGCTGCAGCAGAAG 164351 37 100.0 34 ..................................... GTCGAGGAGATGGCTCGGCTGACCAACACCGCGC 164422 37 100.0 34 ..................................... TCGAACTGCGGGCGCGTCATTGGTCCATCTCCGC 164493 37 100.0 34 ..................................... ATCGCCATCGTGGGCGAGTCCGGCGCCGGCAAGT 164564 37 100.0 33 ..................................... GACATGGCCACCGACGCCTACAGCCACCCGGGC 164634 37 100.0 35 ..................................... GCCGAGTCGACCAACGTCTTGCCGAGCTCGTTGAT 164706 37 100.0 33 ..................................... AGCCGGCGGCTCGATCGTCCAGGGCTGCCCCGG 164776 37 100.0 35 ..................................... AGCCCGCGGGTGAAGGAGGCGCTGGCCTACCCGGT 164848 37 100.0 34 ..................................... TGGAGCAGCTTGACCACCAGGGCGCCGACGCCTT 164919 37 100.0 34 ..................................... ATGCCAGCCACCCGAAGTAGGCTGCCAGCAGCGA 164990 37 97.3 34 ..............A...................... AGGTCCGCTCGGTCGGGCTGGCGCTGGAGATCGA 165061 37 100.0 34 ..................................... GCGTTCAACCTCGGCCCCGGCGCGCTGCGCGCGT 165132 37 100.0 34 ..................................... AGGGCCAGATCGCGCCAGCACCACACCGGGTTGT 165203 37 100.0 34 ..................................... ATGCCGCCGGGTGCCACCACGCCGATGCGTGCCG 165274 37 100.0 34 ..................................... ACCGAGGCCAAGGCGCGCGAGGAAGTCGGCATGA 165345 37 100.0 33 ..................................... GTCGCAGGGGAAGTCGATGGCTGAAGTCGTGCG 165415 37 100.0 34 ..................................... TCGTCGCTGATGCGATCCTTGTGCAGCAGGTACC 165486 37 100.0 34 ..................................... TCGGCGAGCGTCTCGCTGTTGAGCTTGATGAGGT 165557 37 100.0 34 ..................................... CGCCGGCTCACGTCCGGCGAGCAGCCGGCGCAGC 165628 37 100.0 33 ..................................... TGCGGGTGGACGAGCAGCGGGCAGTTGAAGAGC 165698 37 100.0 35 ..................................... TGGAGCCGTCGGGCATGAAGTACCCGCACCTCGCG 165770 37 97.3 35 ...............G..................... CGTACTTGCGCCGGTTGTCCGTGCGGAAGCCCGTG 165842 37 97.3 35 ...............G..................... CTTCGATCTGTCGTTGATAGCCCGCGTGAGCGAAG 165914 37 97.3 34 ...............G..................... TACACAGCGACGCTGGCCACGGCCGCCGCCAAAC 165985 37 97.3 36 ...............G..................... GCGGTCCCGGCCGGCCTGTAGCCCTACTGCCCAGCA 166058 37 97.3 34 ...............G..................... AGCCCGCGGGTGAAGGAGGCGCTGGCCTACCCGG 166129 37 97.3 34 ...............G..................... AGATCACGGAGCCAGGTGATGCCGAGCCGGTCCA 166200 37 97.3 34 ...............G..................... CACTCCATCTCCAGCGGCTCGAGGCCCTGGTCGG 166271 37 97.3 35 ...............G..................... TTCGTCGAGGTCGCCGGTACCTTCGTGCAGATGGA 166343 37 97.3 35 ...............G..................... GACATCGGCCTGATCGGGCGCGTGCCGGAGATGCC 166415 37 97.3 34 ...............G..................... GATGCAGCGGTGCGGGCCGTGCGCGGCATCTGGG 166486 37 91.9 0 ............C..G..................T.. | ========== ====== ====== ====== ===================================== ==================================== ================== 48 37 99.2 34 GTCGCTGGCCGCTCCCGCGGTCAGCGTGGGTTGAAAC # Left flank : TGCGGTGATACGGGCCGCACTGAAATGCTCGTCATCGTCTGCTACGACGTCAATACGGAAGACCGGGCCGGCCGGCGCAGGCTGAGGCGCGTTGCAAAGGTGTGCGAAAGCACCGGGCAGCGGGTGCAGAAGTCCGTCTTCGAGTGCCAGGTGACGCTCGCTCAGATGGATCTGTTGGAGCGACGCCTGCTGGCCGAAGTGAACCTCGATAGTGACTGCCTGCGCCTCTACCGCATGGCCGACACCCGTGGATGCGAGGTTCGTGAGTACGGCAGGTTCAAGGCGACCGACTTCGAAGATCCGCTGGTCCTATGATGGGACAGCGCGAACCCCGAGCGGCGCTCTCGCCTCTCGGCGGTCCGCGCATCCTGCAAGTCCTTGTTTCCACGTGAGATACCTCATTGCAACGGCGTCCCAATGACGCTGCGCCCTGCGACCGTCAGCTGGTTCGCGATTGGCGCTGCTGCGGAGCCCTGGTGTGGCGAACTTGGATTCGTGGG # Right flank : CACGCACTGGGGGAGCTGACCTACATTTCGGCACCTCAAAGGCCGCCTCCGCCGAGACGGCGGCGAGCCTTGTCGCTGCGGGCGGACCCGATGGCATCCGTGGGGCGCTGCGTCTGCTGGAGGCCTGGGTGGCCGCACGCCTCGACGGGACTGGTGCACTCGACCTGCATGGCAGCCGCACCGCGCTGGCCGCGCGGGGGCGCGCATTGGTGGCCTGTCTCGCCATGCAACACCAGCTCTGCTCAGCCGCCTCGGTCGCGCGCTACTTCCACCGCGCCAAGTCGACGCTGAGCGAGCAGATGACGGCATGCCGCGCTCGCGCGCTGGACCGCACCATCCTCCAGACCCCGGCCCAGCGCATCGTCGACGAAGCCGCGGCCCTGACGCGGCGAACCCGTTGATCCGTCCGCGCTTCGCCTCCCCGCTCCTAGAATCCCCCCACCTCGCGCAGCACGAGCCCCCGGGCGATCAGACCGGTTGCGTTTCGGACGTTGCAGGCC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGGCCGCTCCCGCGGTCAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.30,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 235045-234621 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOCD010000006.1 Rubrivivax benzoatilyticus strain JA2-Mal 6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 235044 35 100.0 30 ................................... GAGGCTTGTTTTTGCTTGGCGCTCATTTGA 234979 35 100.0 28 ................................... CGGCGAGAGCGTAAAGTTCGTTGATGAG 234916 35 100.0 30 ................................... TCACCAGTGCCACGCCGATCTCGTTCCATG 234851 35 100.0 31 ................................... GGGATATTTCTTTTTGAGCCTCCACGTATTT 234785 35 100.0 30 ................................... TCTTGCCAAAGGAGTGCGTGTACTTTCATT 234720 35 100.0 29 ................................... GCCGAAGAAGCGCTGTCACCAAAGATACG 234656 35 94.3 0 ................................TG. | T [234623] ========== ====== ====== ====== =================================== =============================== ================== 7 35 99.2 30 GTCAGCGCACCCCGAATTCCGAAGGGGATTGAGAC # Left flank : GGCCGGACGCCTCGCCACCGCCGGCGGACGTATGGTCCGCAACTACTACAGCGACGACGCCGCCGACGTCCACCGGCTGGTTCTGGAAATCGCGCAGCGTTTCGTTGCCGACGAGCCGATCGATGAGTCCCTGCTCGCCGGCCAGGGCACGCCGTGGTTCGTCCGGAAACGCGAATACGCCTGCAGTCGCGCTCCGCTCGACGTCCGGGCGCGCAGGGAGATGCAGGCGCTCTACGACGAGGTTACCCCTGGCGACGGTGAGCCGGCCTACCTGTCGGACGGCGTCTGGCTCGGCGCCGACGGCCGGCTGCAGGACGAACGATGACTGGCCTGCCGTTGCCGAAATGACCGCCATGTCTGGCAGCACATTGATTTCAAAGGGTTTTTGGCTTCTTGCCCTGGTCTGGAGGCCGTTTCGGGCCTCCGAGACGGCGTCCGGCCGGTTCTTGCCCGCAAGAGGGCTAGAATCTCGTTTCGCGACAGGCACTTGCAAGAGGTGC # Right flank : AAAAAATCGGCGAGCTTTTCATACGCCGCGGTGCATCAGCGACTGCAAATCGCGTGGCGTGAAATTGCCGAGCGACGCCATCAGCCCCCATCGCATTTCAACCGCGTCTTGACGCGACTCGGGGGCTCGCCGAGCGCTCGAGAGCCCGCGGGCTGACGCTCGTCCTGACCGCCAGCGCCGGGCGCGACGCCGCCCGCGCCATCTTCGCCATCTCGTGCCTCATCGCGGCCTGCGCCACGCAGCCGCTGCACGCCGCCCTCGGCGGCGCCCTCGCGGCGGCCGTGCGCCCGGCGGCCGAACGAGCCTTCACGGCCCCCTCGCGGCAACGTTGCCGATCCGGGCTGCAGCCGCTACTGCCACCAGACACTCCGGCCCCTCGATGAGCCGCCCCCGAACGGCCGGCGCATCGAGAAAAGGAGCCCCTGTGGCGCCCGCCCGGGTGTCGACGCAGGTGGCGCGGCAAGACGAGTCGATGTGCGGGAGGTGCGCGGCATTGGTTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCGCACCCCGAATTCCGAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 249500-250317 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOCD010000006.1 Rubrivivax benzoatilyticus strain JA2-Mal 6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================ ================== 249500 35 100.0 29 ................................... GCTGTTCCTGCTGATGTCCTTCAGAGTTG 249564 35 100.0 30 ................................... TTCCGGGAACTCCTCCAGGAGTTCCTGCAC 249629 35 100.0 31 ................................... TCGTATGCCGATTGATCCGTGAGCCGATAGT 249695 35 100.0 31 ................................... TGCTTGGCGCTCATTTGAACTCCCTTAAGAG 249761 35 100.0 31 ................................... AAGATCTCGCCGGCGTCCATGCTCACCGAGT 249827 35 100.0 32 ................................... AAGGTGTGCTCATTGAGCATCGAGATGAATTT 249894 35 100.0 30 ................................... TACGGCAGCGCGACTGCGAGCTTTTGCTCG 249959 35 100.0 30 ................................... CTTGCTGTTACGGCCCGCGCTGTTGCCGGC 250024 35 100.0 30 ................................... TGCAGCATCTGCAGGGCTTCGGTGGTGAAA 250089 35 100.0 32 ................................... CACGTTGTATGGGTCGTCGGTGTGGTCTGGAG 250156 35 100.0 30 ................................... TCCCGTGATGGCGGCCCACAGCGCTTGAAA 250221 33 91.4 29 ....--.........G................... AATCCTGCTGCGGCCAGGGCCGCTAATAA 250283 35 74.3 0 ...............C.CG..G..C.C...CG..G | ========== ====== ====== ====== =================================== ================================ ================== 13 35 97.4 30 GTCAGCGCACCCCGAATTCCGAAGGGGATTGAGAC # Left flank : GCGCCGCGAACGGCGTTCGGCAGCGGGCACTTCGTCGTGCTCTGAAGCGATTCCGGGAGGCCCGCCGATGCTGTACTTCGTCGCCTACGACATCAGCTCCGACCGCCGCCGGCGGCGCGTCGCCCGAGTCCTCGAAGGCTACGGGTCGCGACTGCACGAGAGCGCCTTCCAGTGCGAACTGCGCGCCGGCCAGCTCGCGCGGCTGCGCCGGCAGGTGGAGCGGGTGCTGGACCCGGACGAGGACCGTCTGCACCTCTATCCGCTGTGCGAGCGCGACCGGCCCGACCGCTGGCACCTGGCCGCCAGCAAGCCGCAGGACCCGCCGAGCGCCTACGTCGTCTGAGAGCCGACCATGTCTGCCAGCACGTTGATTTCAAAGGGTTTTCCGGCTTCTCGCGGGTCGTGGCACCGATTTCTGGCTGCCGAGACGGCAAATGGCCGGATGCTGCCCGCAACGGGGCTAGAATCTCGTTTCCTGACAGGCACTTGCAAGAGGTGCT # Right flank : GGACGAGCGGCGAAGACGGACCGCCAGGCCAATGGCCCGGCACGCCACGTCAAGCCACGTGGATCTGCCCGGGCTCGATGCCCAACAGCCCGTACTGGCCATCTCTGGCGCCGCGGTCCGCCGGACCGGCGATGGCCAGCCGCGTCCCGAGTTCGGGGCCGAAGGCGCGCACCAGCGCCTTGCGGATCACCGACAACCGCGGCCGCAGGTCGGCGGGCTGCAGCGCGACCGACTGCCGCTCGACACCGACGCGCCGGCAGGCCTGGTCCATCAGCGGCTGCAGCATCCCGACGCTGGCGGCGACGTCCTTGCGCAGCAGCACCGCGCCCGGCGCGACGAGCGCCGCGCTCTCGCGCAGCGCCTGCTGACGCCGCAGCGCGAAGAACACGTACCAGGCCATCAGCGAGGGTTCCAGCAGCGCCTCGCCGATGCCGGCGACGCGGACCCGGCGCGCGGCCGGCAGCACGTCCAGGCGAACGCTGCCCAGCGAGCGCTGCGCG # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCGCACCCCGAATTCCGAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //