Array 1 274122-273468 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL892076.1 Centipeda periodontii DSM 2778 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================================================================================================================================================================= ================== 274121 23 100.0 48 ....................... AATGCAAAAGAACACAAGACGGCAACATTCGTCGTTATTTTAAAACCA 274050 23 100.0 50 ....................... CTTTCGTACACTTACCGTACAATCATAACAACCACATCATTTTAAAACCA 273977 23 100.0 49 ....................... CATCGGGGGGAGTGCCTTACGATGCCAATCCCAAAGCATTTTAAAACCA 273905 23 100.0 51 ....................... TCTTGATAAAATCAATCAAACGACTTCTCTCAACCCCATATTTTAAAACCA 273831 23 100.0 48 ....................... AAATTCCAGCGGCGAATGCGAACGGATCGCCGAACAATTTTAAAACCA 273760 23 100.0 47 ....................... AGTCTAAGATATACCACTGCGCGAACATATCTGCTATTTCAAAACCA 273690 23 91.3 177 .....................CG CACGAACCCTAGCCTCCCCTGCCACAGCGGGGGAGGGGGACCGCGAAGCGGTGGAAGGGGCGCTATGAACGATCCATGCATCTCTATCGTGAGAAAGCCTCATTCGCCACAAGTGCCCCCACTGGCTCGCACCGCTCGCCACCTCCCCCGTTTCGACGGGAGAGGTGAATAGAGCAT 273490 23 78.3 0 T............A..T...TT. | ========== ====== ====== ====== ======================= ================================================================================================================================================================================= ================== 8 23 96.2 67 CATCCCCGCAAGGGGACGGAAAC # Left flank : TCGGAAGATGTTCAAGGAGCGGCTGCATGATTTTCAACGGCACGTCCAAATGGCGAATCTTGCCCCATTCATCCGCGTGCTGAAAACAACGGAACAGTGGAAAGAGGAAATTTGGAACGGTATCCGAACGGGTTATAACAACGGATTCACCGAGGGCTGCAATAACACGATCAAGGTTCTAAAACGTGTCTGCTACGGTTTTCGTAACTTTGAGAACTTCCGTCGCCGCATTCTCTACATCCTCAATAATGAAGAACGCAAATCTCGTCGCACAAAACATCTAAAAAAATAGCCGTAATTATTTTCCGTAACTATTGACAAAGAGCCCAAAGGCGTGGAGGGATTGCAGAGAGGGGGACAATGTGCTATACTTAAAAATGAAATCCGCACCGCACTTAGAGCCGCAACGCTGGCAAAGGATTTTAGAACACATCGCCGACGCAAAGTGCCATTTTGACACAGACAGCACAAGGCTTCCAGCCGCGAGGATTTTAAAACCA # Right flank : TCTCAACCTTCAACAAACTGCTGTTGAAGGTTTTTTTGTGTCTGCAAAATCACGGTTGACAAAACACTGCTCTCATGATATCCTACGCTATTCCCATGACAGGGAACCCCGAAATACAGGAGAGGAGTGCGGCAAGGGGCGCGGGGCAGCATCAAAAAACCTCCCTACGGAGAGGGAGGATATTTACAAAGGAGTTGTGTGGAATGAATACGAAAAAGAAGTGTATGCTTGCCGTGGGGCTTGCATTCGGTATGTCCCTGTGTGCTGCGGTGCAGCCTGCACCATTCGTTTCCTCTGCAGCGGCGCATTTTATGACGAGCGCGGAGGAGCATGAGATCGGCAGGGCGGCGGCGGAGCGTTTTGAGGAGAAGAATGATGTTGCGATGGACGATGATCTCATCACGATCCAGCAGCGTCTGATCGCGTCGAACCCCGAATACCTCAACTGGAACGATGGTGTACATAAGCGTTGGCTCGAACCAATGAAGATGTACCACAGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 293350-292812 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL892076.1 Centipeda periodontii DSM 2778 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 293349 35 100.0 33 ................................... AAAAGGGATGAAGTCAACTCATACATCGTATTG 293281 35 100.0 37 ................................... CACAGCCTTTTCAAGCTGAATAGCGAGCTGATTTTTT 293209 35 100.0 39 ................................... CTTGTAGATGATACTGATGATGAGATTCTTACTGGAGTA 293135 35 100.0 39 ................................... GCATCAAGCCGATAATCCTCTGAGGCTGAAATTGCATTG 293061 35 100.0 38 ................................... TGATTCGTCAAGGGCTTCATACATTTCAACAAGCACAT 292988 35 100.0 35 ................................... GAGATAGCATTAAAGCATCTCAATAAACCATATGT 292918 35 100.0 37 ................................... TTTTTAGCATTTTTATAGACAACTGCCTTTTCCTCTT 292846 35 97.1 0 .................................G. | ========== ====== ====== ====== =================================== ======================================= ================== 8 35 99.6 37 ATTTAAGCAACAGCCCCCCGCAAGGGGACGGAAAC # Left flank : TTATACACAGGGGGACACCATGCGAGAAGCCCTCTATATGGCGAGTGATGCACTCGGACTTTATCTCTATACGCTCAAAGCGGACAAGAAGCCCTTTCCGCCCGCGACCGACCCTGCTGACATTGTGACGCATGGGCGCGACTTCACTACACTCATCGAATGGGACGAGGAGGCGTATCTGCGCCGGACGGACAACCGTTCGGTGAAGAAGACCCTCACCATCCCTGCATGGATGGACACGCTCGCACGCGAGCACAACATCAACTTCTCTCAGCTCCTGCAGAACGCGATTCGTCGCGAATGCGGGATGGAGGCTTAATGGGCTTCCTGCAGCGAACACCGTTGTACAATATGCGCGAGTAGAGATCCGCGCCGCACCAATAGGCGCAAGGGATACAGCAATTTTTAACACAAACGGGCTACACTTGTGCGGCTCAAAATACATTCGCGCCGCAAACTGCCCTTTTCGATGAGATCCCGCAAGGGATTGCGCGGCGAGG # Right flank : ACCCGTTTTAACAATTTCATAAGGGGGGCAGTGCGATGTTTGCATATATCACGGAGGAAGGGGCGTACGTTCAGAAGCGCGGTGGGAATTTCGTCATCGGACGCAACAATGAATGCGTGATGGAGATTCCCGAGGAGGTACTCGAATCGCTAACCCTAATCGACAGTGTGCAGGTGTCCTCACAGGCGATGGTGGAACTGCTGCGACTCGGTGTTCCGGTCACTTGGCTCTCGCGCACGGGGTTCTTCTTCGGACGGCTCGAGTCGACACGTCATGTGAATGTCTTCCGGCAGGAGCGACAGGTGCTCATGAAGGGCTCCGGCTTCTATCTCCGTATGGGCAGGAAGGTGATCGCGGCAAAGGTACACAACCAGCTCACGCTGCTACGCCGCTACAACCGAAACGCGGAACTCCCGGGGGTGCAACAGGCAATCGACGAGATTCTTGCCCTGCGTAAGCGCATCCCGCTCGCCGAGACGAGTGAGCAGTTGATGGGCTAC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAGCAACAGCCCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 3 520830-520516 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL892076.1 Centipeda periodontii DSM 2778 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =================================================== ================== 520829 23 100.0 50 ....................... TTGCGTTACGGATAGTGCAATCACGAACGCATGAGAAAATTTCAAAACCA 520756 23 100.0 51 ....................... CTCCTCCACACTTACACCACTGAAGGTAAGGTGTAAATCATTTCAAAACCA 520682 23 100.0 50 ....................... CACGTTGTCGATAATGATTGTGTCGTACATGGTAATACATTTCAAAACCA 520609 23 100.0 48 ....................... TCATACATGGACGTGAGAACGCGACTAATTTTAGTAATTTCAAAACCA 520538 23 91.3 0 .....................TG | ========== ====== ====== ====== ======================= =================================================== ================== 5 23 98.3 50 CATCCCCGCAAGGGGACGGAAAC # Left flank : CGCGCTCTTTGCGTTCACCACGATCCTCGGCTGGAACTACTACGGCGAGCGTGCCGTGTTCTACCTCGCGGGCATGCGCGCCATCCTGCCGTACCGACTCGTTTTCATCGCGCTCATCGCGTGCGGCGCGTTCCTAAAGCTCGAGGCGATCTGGGTCCTCGCCGACATCGTGAACGGGCTCATGGCGATCCCAAACCTCATCGCCCTCATCGCCCTCTCGGGCATCGTCGTGCATGAGACGAAGCATTATCTTGAGAAAGTGCGGCGTGGCGAGCGGGTGCGGCGGTAAGTCGCGCAAATGCACAGGAAGCGGCTTGCACGGCGGGCGGCTCTGTGCTATACTGTAGGGGAGATCCGCGCCGCACGTAGAGCCGTGCGGGATATAGCTGTTTATAGAACGTATTGCCGTACGGAAAAGAAGGGGAGACACATCCGCGCCGCAAAACGGCAGATTGAGCCGCGCGGCGCAAGACTTCCCGAGGCAAGGAATTTCAAAACCA # Right flank : TGCGAACCCCAGCCTCCCCTGCCGCAGCGGGGGAGGGGGACCATGCGAAGCATGGTGGAAGGGGCGCCTTGAACGATCTGCGCATCTCCATCGTGAGAAAGGCACATCCGCTGTAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.23, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 573543-573871 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL892076.1 Centipeda periodontii DSM 2778 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 573543 36 100.0 38 .................................... ACAGTTGGCAGATAAAGTATCTGCGATTCGTATTGATA 573617 36 100.0 38 .................................... GCGTCTTTCATGATTGTTTCCTCCTATAGTTATAGATG 573691 36 94.4 35 ............T.....C................. CCTCGGCGAGGTCACGATCGAAATCAGGTTTGCTG 573762 36 100.0 37 .................................... ATCATGCATATAATCATGACGTGATTAGCTGTTTTGG 573835 36 91.7 0 ...T......T................T........ | C [573868] ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 97.2 37 TCCCGACACACACAATGCTGCGTGCGGCATTGAAAC # Left flank : AAATACGATTCTGATTGAGAAAATCGCCCCACGCGGGGATGTCTACAAAGGAGGCTGATTGATATGACTGTAAAAGCACAGATTGTGGAGATGATTGATTTTGTTCCCGCCCGTGAACTTCCCATTATTTTGGAGGTTGTCAAGCGTTTCATACCAAACGATGCCGATGACCGTATGACGGAGGATGACTTGAATGCCCATCGCCGCGCCATGCAGGAGTATAAGAACGGGGAAACGGTTTCTCATGATGAAATTAACTGGGATTGACGACTCATCGGACGAAACTACCGCCTCCTAGTCCAATCAAAAAATCCGCCATCGTAGGCAGCAGAAAGGAGAACGCATGGACAATATCATTGAAAAAGAACGAAGCGTGTGCTATCATAGAGGAGAAGGAAATGGAAAGTGCTCTGGCGTTGGCGTAAAGCCGCATTCCGCCGTTTCGTCTTTCCAAAACGCCTTCTCAGCCCGCGCGGGACAAGGGCTGCGGGACACAGGAA # Right flank : CAAAACGGCTCTGCGTGTCCACATCGGTCACACAGAGCCGTTTTCGTATGCGAAAAGCGCACAGCAATCCTTGACGATGCGGCGCACAGATGGTAGTATAGAGATACAAAAAGGGCACTGCCGTAGTCGGCTCCCCAATAATAGGATGAAATTTCCGCCTACTGTTTGGAAGCTGAAGGCGGATTTTTCTTATTTATCGTCGAACGACGATCATCAATAATGAAATACTTCTATATGCTTCAAATATATTATTGTTTTAAGGAGGTTTTCAAATGACGAAGGATATTGTCATATCAATGGACGAGGAATTGAAGTCGAACTTTGAAGAAGTCTGTGCAGATATTGGAATTTCTGTCCCTTCTGCCATTATGATTTTCGCCCGCCGTGTAGCAAGAGATCGTAAAATTCCATTCGAGCTTACGGCATCCCCGCGCCTCTCTGATCCGTTCTATTCGGAAAGCAATATGGCTCACCTGCGCCGCGGGATCGAAGATTTTAAG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCGACACACACAATGCTGCGTGCGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 5 577493-577892 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL892076.1 Centipeda periodontii DSM 2778 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 577493 37 100.0 34 ..................................... TGACCTCTTCGATGAAACTTTGCATTAAGATGCG 577564 37 100.0 37 ..................................... AGTGGGTCACTTTCCCACCGCGAGCCTGAACGATGAA 577638 37 97.3 36 ...................C................. GTTCATCCCCTTGAGGATGTCCGCCGCCTTATAGAG 577711 37 94.6 36 .............T.....C................. AAGTGCTCCATGTACTCACTGGTGACGACCGATGCG 577784 37 94.6 35 .............T.....C................. AACGTCGCATCGAAGAACGTCGCTCCACAAGCGTT 577856 37 91.9 0 ............................T.....C.G | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 96.4 36 GTCCCGACACACACAATGCTGCGTGCGGCATTGAAAC # Left flank : GCGTGTGCAGCGGCAGCGTCTCCGGCGTATACGCGCCGAACCCGTCCACCACTGCGTCGAATCCCGCAAGATCCTCCTTCGTGAGCGCCATAATGTCCTTCTGCACAAACTCCTTTGCCGCGCTCTGATTTGCGCCCCGCGCAAATGCCGTCACCGCATGACCGCGCGCGATCAGCTCCGCAATGATTGACTTGCTTGCCTTTCCGTTCGATGCCACAACTGCGATTTTCATATGAAATACCTCCATAAAATAATTTTGTAATTAAATCAGTTACGTATGGAGTATAACACAGATAAAAAAGAACGTCAACAGATACAATATATTTTTTACCGACCTCTCTGCATCGACGCAAAAACGTCATTGAAAAAGAACGAAGCGTATGCTATCATAGAGGAGAAGGAAATGGAGAGTGCTCCGGCACGGGCGCAAAGCCGCATACCGCCGTTTCGACTTTCCAAAACGGTGCAGCCCGCGCGGGACAAGGGCTGAGGGACACAGA # Right flank : GCAAAACGGCTCTGCGTGTCCTTTCGGTCACACAGAGCCGTTTTCGTATGCAAAAAGCGCACAGCAATCTTGACGATGCGGCGCACAGATGTTAGAATAGAGATACAAAAGGGCATTGCCTAGCGGTCGCCCCCATTATTAGCAGAGATTCCCCCGCCAAGGTTTGCAGCGCAAGGCGGGGATTTCTCATTTACCGTTGAACCGATATGACCAGTATGGTGAACACTACAAGAAACGTAAGAAACTCATAGCTCTCCATCTGAATCCCCCCTTTCGGGGGCTGAGTGACCGCCCTTTCGACAGTGCTTATCGTGAGTATACCACAAGAACATACGTATGACAAGAAAATCCACTTGACACGCCTATGTCAAGTGGATTTTCCTATGCAGAATGCAATTACAGCGTCGCAATCGAAGCGATACGCAGATCATCATCCGCGCGTTCAAACTCGATGCGTAAGTCCTGCGCAAAATGTGCAATCAGCGCATCGCCGTCTGCCT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGACACACACAATGCTGCGTGCGGCATTGAAAC # Alternate repeat : GTCCCGACACACATAATGCCGCGTGCGGCATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA // Array 6 1997044-1995154 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL892076.1 Centipeda periodontii DSM 2778 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 1997043 31 100.0 35 ............................... TACGAACTGAAAGGATTCGACCGAGAAACCATTGT 1996977 31 100.0 36 ............................... CTGCAGAAGAACACGCCGCACGGGCACTGCGCCAGT 1996910 31 100.0 35 ............................... ACACAGCGATGTAATCAGACGGCTGCGCGATGAGT 1996844 31 100.0 34 ............................... GATTGGCATCCGTCAGTGGCGCACATGCGAGCGT 1996779 31 100.0 35 ............................... CTCGTTTCGGCGGCGAATACGACCATGACCGAAGT 1996713 31 96.8 35 .......T....................... CTCGTTTCGGCGGCGAATACGACCATGACCGAAGT 1996647 31 100.0 35 ............................... TCTGCGCTCATGTTCATCCTGTTGTGTGCTAGAGT 1996581 31 100.0 37 ............................... ATGCGTCGAAATCACTCAAGATTACGGCGCCGCGCGT 1996513 31 100.0 36 ............................... CCTGCCAGAAGCGCGGGCGCGTATCATGTCGGCGGT 1996446 31 100.0 36 ............................... TCGCCGACCGCATTACACGCCTTTTTGAGTTCGTGT 1996379 31 100.0 34 ............................... ACGAGTTCAGCCGAATTTGAGGTCCAACACACGT 1996314 31 100.0 36 ............................... TGAGAAGAGGAGTCGCCGCTTGCATACGAGCCGAGT 1996247 31 100.0 35 ............................... ATTGACGTAAACATAAAATTATTATAAGAGCTTGT 1996181 31 100.0 35 ............................... ACCAGAACAGCCACCCCACGTCTCTGCCTCCGGGT 1996115 31 100.0 38 ............................... GCGGCTTGCCCGCAGCACAAAGGATCTATTAGCGATGT 1996046 31 100.0 35 ............................... CTGCCTTGTGCGACGATATGCCGGCGTAAGAATGT 1995980 31 100.0 36 ............................... GCCCGTCAGGTGGTCGCCGTCGCGCACCTTCTGGGT 1995913 31 100.0 35 ............................... GCGGTCAAAAGGCGTTGCGATCAAGAGCCTAACGT 1995847 31 100.0 35 ............................... AGAGGACGTGGCGGGGGGTGTAGACCCCCCCGCGT 1995781 31 100.0 35 ............................... TGATTTGGTCAGACCTTTTGTCGTAGTGGTACGGT 1995715 31 100.0 36 ............................... ATCGCGGAGGCGGAGCGGCTGCGCGAGAAGAACGGT 1995648 31 100.0 35 ............................... GTCTCAGCAATCCGAATATGATGCTTTGACTTCGT 1995582 31 100.0 35 ............................... TCCGTGACGCTCTGTCTTGCTCACGACTTCGCGGT 1995516 31 100.0 35 ............................... AGCTCCATGCTGACGGTAATATCTGTAAACGCTGT 1995450 31 100.0 35 ............................... GAGCAATTTTCGTGAGCGTGCCTATCAGAACGGGT 1995384 31 100.0 35 ............................... TAAAAATCCGAATAATAAACTCGAAATCAAGTGGT 1995318 31 100.0 36 ............................... ACTCACTTGTGCAATATTATGACCAGTACAGCAAGT 1995251 31 100.0 36 ............................... CATGCGAGCTCATCCGAATCATGCTGCGGTAAACGT 1995184 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 29 31 99.9 35 CGCGCCCCGCACGGGGCGCGTGGATTGAAAC # Left flank : CGCGTGGATTGAAACGGATATCGAAAGTCGTCATGGACGATCGACGTCAGTCGCGCCCCGCACGGGGCGCGTGGATTGAAACGACGGCGCGGATATATGGGTTGACCACTACTTGAGTCGCGCCCCGCACGGGGCGCGTGGATTGAAACTACAAGGAGATCAATGAAAGCATGGATTATCCGGTCGCGCCCCGCACGGGGCGCGTGGATTGAAACTCGTTGTTACGGAAAATGTACCGATGAGAAATACGTCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTCCTGTCCTAGGCAGGTGATGAGTGTTACGT # Right flank : TTAGGCTCTATGATAAATGTTGTGGAGACACATTATGTGTCCTGCAACATTTATTTTTTTGTGCGAAAAGAGGTGAGATCAGAATGATAAAGCCTGCTGAGTTTGTCAGCTATGTTGATTCGCTCCCGGAGGAGTGCATCGAGATTCGCACGGAGGATGAGATACGTTTCCATATCCCTCGTGTCGATGAGGTGAAATGTCCCTCGTGCGGATCGCATCATACCGAGGTGCATCAGTACCGCCTTCAGACGTTACAGGGGATTCCAAATGCCACGAAGCAATATGTTTACAATCGTCGGCGGTATCGCTGCCAAGACTGCGGAAGAACCTTTGCAGAGAAAAATCCTTTTCTTGCGGAGCGGCAACGTCGGATTGGGAATCGGCTGCGGCAAATTCGGGCACAAAAGAAGATCACGCAGGGGCAGGTCATTGAAGCCGTCGGAATACCTCTTTATCTGTATAAGAGATATGAGGATGACACCGAAGCAGAAGTGCCGCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.30,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 2002154-1997329 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL892076.1 Centipeda periodontii DSM 2778 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 2002153 31 100.0 37 ............................... TACCAGTGACGGATTGAGCATATTTCCCGTAGCCCGT 2002085 31 100.0 34 ............................... TGCTTTTGAAAGGATGATCAAAATGACGCTGAGT 2002020 31 100.0 36 ............................... ATCCGCTTAAATCCGATGAGGAGGTCTATCTTGCGT 2001953 31 100.0 38 ............................... TCCCCGTCGGCGGGGCTTGCGGATCGTCCATTGCGAGT 2001884 31 100.0 35 ............................... TCCGGCACGTCATACCACGCCGACCACGCATAGGT 2001818 31 100.0 36 ............................... AAGTTGTGGTCAACGATTTGCAGCATCGCAAATGGT 2001751 31 100.0 35 ............................... ACTCCTTCTATACCTGCTTATACCTGCTTATTCGT 2001685 31 100.0 34 ............................... TCGTATCTGCGCACTTCCGTCGCGGTATCTGGGT 2001620 31 100.0 35 ............................... TCCCAAAAGATATGCCGGACATTGCCTCGATTGGT 2001554 31 100.0 35 ............................... ATCCAACATACGCCCATACAAGCGCGGCGGGAGGT 2001488 31 100.0 36 ............................... ACGCTCCCCTGCGCGCTTGATAACTGATAGAGTCGT 2001421 31 100.0 36 ............................... CTTGAGGAGCGCCGCGAACTGCTCCGGCGTGATGGT 2001354 31 100.0 36 ............................... AGCACTCTAAGAAAAAGGTGATATAGGAGATCAGGT 2001287 31 100.0 36 ............................... ATAGTCAATGACGTGGAGTGTATCGCCCGCAAGCGT 2001220 31 100.0 35 ............................... TCCAGTGCTTATCCATCCGGGAGCGCCCCACGGGT 2001154 31 100.0 35 ............................... GACGAAGTCCTTGTACTCGTGGAGGTACAGAAAGT 2001088 31 100.0 36 ............................... GTGGAATTGTTACTCGTGCAATCTGCATAAGTGCGT 2001021 31 100.0 35 ............................... ACAAAGTGATACAATTTTGAAAGACCGCAAACCGT 2000955 31 100.0 34 ............................... ATAACGGCAAAAAATGGTTGAAAAAGCCTTATGT 2000890 31 100.0 35 ............................... ATGGAAGAAGCTGCGGTGCAGCAGGAGGAAACGGT 2000824 31 100.0 37 ............................... CGCGAGATTGCTGCAAAGCCGGACAATGAATGCGGGT 2000756 31 100.0 36 ............................... ATATCTCATGAGATATGTAGTCAACCCCCTAAAGGT 2000689 31 100.0 36 ............................... ATCATATATGTCAGCGTGGAGCCGCAGGCCTCAAGT 2000622 31 100.0 38 ............................... TTTCCGCAAAAAATCACCGATGCAGATGCAGGTCGGGT 2000553 31 100.0 37 ............................... TCTACTATTGGTACAAAGCAGTACAACAACAATAGGT 2000485 31 100.0 35 ............................... CCCGCCTCGCCGCTCGCAAATATCGTCTTGTCAGT 2000419 31 100.0 36 ............................... AAAATCGCCATCTCCTCTTTTGTCGCATAGACGCGT 2000352 31 100.0 35 ............................... GAATGAGGCGGTGGAATCATGGCAAAGAGCATCGT 2000286 31 100.0 35 ............................... GCCATTGCAACACCTGCGGGCACGCTCCCGCCGGT 2000220 31 100.0 36 ............................... TCTGTCACCACAACCAACCCCTCTTTTTGCAGCGGT 2000153 31 100.0 35 ............................... GCCGGTGCATCGCTCGGTGCAAAGATCGAGATGGT 2000087 31 100.0 37 ............................... CCCGACACGACGAGCACGTACGCCAAGGAAGGCACGT 2000019 31 100.0 35 ............................... AACCACATGGATGCGCCCGGACTTAGCCCAGCGGT 1999953 31 100.0 36 ............................... CCCAGACCGTGAGCGCAAATCGCTGCGCCGCCGTGT 1999886 31 100.0 36 ............................... TCGGTAAGGTGGTCTGCGGCGCGACAATTGACCGGT 1999819 31 100.0 35 ............................... GATGCGCGCGCTTTCATCCTCCGTTTGTAATGCGT 1999753 31 100.0 35 ............................... AGACGATCAATCACGGCTGAAGAAAAAGCACTTGT 1999687 31 100.0 36 ............................... TGATGTGTCGGCACAACAGCAGGAAACATCGGCGGT 1999620 31 100.0 36 ............................... TCATTACCTGTGCCTCCTTATGCGGGAATGATTGGT 1999553 31 100.0 35 ............................... ACGCCGAAGAAGTATCGAAAATAACTTTCCGTGGT 1999487 31 100.0 35 ............................... ACGCCGAAGAAGTATCGAAAATAACTTTCCGTGGT 1999421 31 100.0 36 ............................... ACCGATGAACAGATTTCGTGGAATCCCCATCCAAGT 1999354 31 100.0 36 ............................... AACGTGCTGGATCGCAACAACAACATCGATCGCCGT 1999287 31 100.0 35 ............................... TTGCAGACCAACAAGAACGCCTACAAGGAAGAAGT 1999221 31 100.0 36 ............................... CAGATCGCAAAAGCAATCGCAGACGGCACGCCGGGT 1999154 31 100.0 35 ............................... AGCGTGGGGAGCCGCTGCCGGCATGGGCGAACGGT 1999088 31 100.0 36 ............................... GCCCCCCCATGTCCTACAAAAATTGTCCAATCTTGT 1999021 31 100.0 35 ............................... CGACATGACGCGCTCCAACTTCTGGATGTCCTTGT 1998955 31 100.0 36 ............................... CGTCTTGCTTGCGGTAACACAGACGCATAACAGCGT 1998888 31 100.0 35 ............................... TGCTATACGCAAAACACCCTTGCAAGGGGTGGGGT 1998822 31 100.0 35 ............................... ACGCGCCGCAGGACGAGATCGGACACGAGAGACGT 1998756 31 100.0 36 ............................... ATACCGATCGCGCGCAGGATGTCCTCATCGCGCGGT 1998689 31 100.0 36 ............................... GCGAAGTCAAGAAGAACAGTTCCGCTCTTGTCGCGT 1998622 31 100.0 36 ............................... TGTCTGACTGCCGCAAAAGTCATGATAATCCTCTGT 1998555 31 100.0 35 ............................... AATTTTCCTCCTATCGAAATTAGAACAGCTGCTGT 1998489 31 100.0 35 ............................... GGCGGTACTGTCTCTATGGAGATGTACAAGGGAGT 1998423 31 100.0 35 ............................... GAAAATTCTGACGGCGATGTTGCCGTGTCCGTCGT 1998357 31 100.0 35 ............................... AAACGTCTGGATGCTGCTGCAAAGGCAGAGAAGGT 1998291 31 100.0 37 ............................... CCGAAACATCAAGAGGAATTGCGGTCTCCTTGTTGGT 1998223 31 100.0 37 ............................... CAGCCGAACACGCCCGCCGCGAACGCGAACGGCTCGT 1998155 31 100.0 35 ............................... TGATAATTTAGGGCAAAATAAAACCCCTCCGAAGT 1998089 31 100.0 35 ............................... GCCATTTTAGCGCGCCTCCATTTCTGACTCATAGT 1998023 31 100.0 36 ............................... ATGTGTGCGGGAACTTCGAGGAGGCAGAGCCGACGT 1997956 31 100.0 35 ............................... GGCATGTAATCCACGCGCGTCAAATTCCAAACGGT 1997890 31 100.0 35 ............................... CCCGACAAGCGCGAATTGTCTAGTAATCTGCTAGT 1997824 31 100.0 35 ............................... CAAAAAGGAATGAATTTTTGGCAAGACAGCAAGGT 1997758 31 100.0 35 ............................... TTGACTTCGCGGAAACTTACTTGCACCTTCATGGT 1997692 31 100.0 37 ............................... TGGCAAGGTGTTTTTTTCGGTCGGATTTTTCCGCAGT 1997624 31 100.0 34 ............................... TGCCCCGGGCACGCTGTTGCCATGAGCTCACGGT 1997559 31 100.0 36 ............................... GGATATCGAAAGTCGTCATGGACGATCGACGTCAGT 1997492 31 100.0 36 ............................... GACGGCGCGGATATATGGGTTGACCACTACTTGAGT 1997425 31 100.0 35 ............................... TACAAGGAGATCAATGAAAGCATGGATTATCCGGT 1997359 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 73 31 100.0 36 CGCGCCCCGCACGGGGCGCGTGGATTGAAAC # Left flank : CGACCCGACTCAGTGCAAGCAGTTGGAACTCGCACTGCTTGACATCATCGATCTGCAGGAGGATAGTCTGCGTTTTTACTACCTTGGCAAGGACAAAGGTCCGAAGGTCAAACACTATGGCACAAAGGAATCCTACGATTTGGAATCTGCCATTATCATCTAAGGAATCGCTGATAAAATAGACCCTCAGATTGGCGTAGATTTTTTCATCCGATTGAGGAGGCAAACCGGACGCATAGTCAAAGCTATGTGGAGGATTTGCAGGCATTGAGCGGGCAAAAAAGATGCGCTAAGATGGCGGTGCTGAATTTATCAGTGCTTTCCTAAGTACTTTTAGGAGTGCGAAGGTGAAGTAAACAGAAAATGAAGTGAAGAAATATAGGTGCGTGAACCACATCAAAGGAGGGGTGTGGGACGTATGCGCCAAGCAAACCGTATTCATGGCGAGTAAGACCCATGAATATGTGGCAAAAGAGGGAAGTCGTGACCTTTTTTGCTGT # Right flank : TCGTTGTTACGGAAAATGTACCGATGAGAAATACGTCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTCCTGTCCTAGGCAGGTGATGAGTGTTACGTCGCGCCCCGCACGGGGCGCGTGGATTGAAACTACGAACTGAAAGGATTCGACCGAGAAACCATTGTCGCGCCCCGCACGGGGCGCGTGGATTGAAACCTGCAGAAGAACACGCCGCACGGGCACTGCGCCAGTCGCGCCCCGCACGGGGCGCGTGGATTGAAACACACAGCGATGTAATCAGACGGCTGCGCGATGAGTCGCGCCCCGCACGGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.30,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //