Array 1 645812-643994 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSLT01000012.1 Thioflexothrix psekupsii strain D3 unitig_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 645811 28 100.0 35 ............................ CAGAAATAATAAAAGGTGCAATCGTGAGCGAGTTA 645748 28 100.0 36 ............................ ATTCTAATAATAAGCGCAAAAGTAATAATGCTCAAA 645684 28 100.0 35 ............................ CCTTTTCTTCTGGGTTTAGTCTTTTGAAGTTTTCC 645621 28 100.0 35 ............................ TCATTTCTAAAAGAAAGATTGAGCCTGAATCTTTA 645558 28 100.0 36 ............................ TAATAATGGTAAACTTAGTCTTGCTGTCGAAAAGGT 645494 28 100.0 36 ............................ AAACGAGCCATACGCAAGTCTGGTGTCACTAAATTT 645430 28 100.0 36 ............................ GCAACAAAAGACAATCCCCCCGTCTTAACTCATTTA 645366 28 100.0 35 ............................ TTTTACTGCTTTGCTATCATCAATAAATGACAAAT 645303 28 100.0 36 ............................ TTTAAAATCAATGTCAATTCATTGATTATGCTCTTT 645239 28 100.0 37 ............................ TTATTAAATTCAGTTGTTTTCCTGCTGGAAAAAGGGC 645174 28 100.0 36 ............................ ATCAATGTCAATTCATTGATTGATTATGCGCTCTTT 645110 28 100.0 35 ............................ GCGGAGCCATCTGAATCACCAGCGGCTATTGCAAA 645047 28 100.0 38 ............................ ATGAGGCATCATCATCCTGACGCAAAGCTGCTATTAGC 644981 28 100.0 36 ............................ GGAGCCATCTGAATCACCAGCGGCAAGAGCTAAAGA 644917 28 100.0 34 ............................ TCAATGTCAAATTCATTGATTGATTATGCTCTTT 644855 28 100.0 36 ............................ CTGATAAAGAGCAAGCAACTTGTTGTTAATAATGAT 644791 28 100.0 34 ............................ ACTAATATTTCAGTATTTAGTGGCTTTTTTATTT 644729 28 100.0 35 ............................ TGAGGTATTACTAACTGTCAATGATCTGTTATTAC 644666 28 100.0 37 ............................ TGGCTTTTTTATTTAACTAGATATAGCGGTTTATATT 644601 28 100.0 37 ............................ CACTACTGCCCTTCTCAAACAGTCCATACGCAAATCT 644536 28 100.0 36 ............................ CGAATTTTGACGCTATCGAGTTAATGATAAAAGAGG 644472 28 100.0 36 ............................ GCCCAACGCTGTCGAAGAGCCATCTGAATTATCAGT 644408 28 100.0 37 ............................ ATCACTATTGTATCTGCGTATAGTAAATATACTATTT 644343 28 100.0 36 ............................ CGAACCCATATTAAGTATTATGATGTGGCACGCAGT 644279 28 100.0 36 ............................ AACCGTTACACTTGATGAATCACGACCTAAATCGTG 644215 28 100.0 36 ............................ AAAGCCTAAAGCTATCGAAAAGCCTAAAAAGCCAAA 644151 28 100.0 36 ............................ AAATATGCAGAATCACCCATGGGTATTGAGTATAAT 644087 28 100.0 38 ............................ TTGATTTAAAAGGTACAAAGATTACCGAGTTACCACAA 644021 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 29 28 100.0 36 CTTTCTACCCCAAACGGGAAATTGAAAC # Left flank : TGTTTGAGGCGTAATAATTTCAGTGACTTGGGCAGCTTGAATGCGATAGTCGTCTGTTTGGCTTCGCAAAGGCACAGCAATTTTACCCTCTTGCCAACATGTCAATATTGCCGCGACATATCCCGTATGATTAGTTGCAATAATACCAATTCTCGGCTTTGAGAATATACTATTCTGTGCTTGCATAATTCACCGTTAAAAATTTGGATTAAAATTGTTTACAATAATACTTGACAACAAGTATTTCCATAAGTTTTACAGCTAATTTACCACAAGCCTGCAATGGACAAAACTAATTTTTACAGATGGGAAGAAGGAAAAACGAGATTGGATTGTCTTGTTAAATTTTAATAATAAAAACAATCTGTTATTTTCTCGTTCGCGGAGAAGCGGGTTAAGGACGTAGGAGAGCGAGGAATTTGAACGATTTTAGCGATTCACTAAGTTTCTTGCGGAAGTGGGAAAGGAAAAAATGAAATGAAGAGAATATGAGTTATCGT # Right flank : CCTCCGAATTATGCGGTTTGGCGGCGTTACGACTAAGTAGCGTAGCACTGAAACACAACGTAACTTGTTGATTTTTCATAGACCGTATAACTCGCTTCAACTTCGACCTCCTACTGTTTTGGCGTAAACGGAGGTCGAAGTTGGGAAAATTATTTCATATTCATCCTAAAAAGTCAAAAAAAACTATCCCAACCCTAAAATAATACAAAATAACCCAAATTTGTCATTCAAAATCCCATTATTCCTGCAAAAGACGCGTACACGGCAGAAAAATGTAAAACAATAAAAACAAAAACAGAGCCATATCTCCACAACAGCAGATAGACCCATAGAAAAAACAACAGAAAAATGAACAAACTGAAAACTGGTCGGGGTGATAGGATTTGAACCTACGACCCTTGCCTCCCGAAGACAATGCTCTACCAGACTGAGCTACACCCCGACTGCCAATAAAACCGACACACCACAACTAATACGTGCGGTGAATAGAGAAATGCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTACCCCAAACGGGAAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 2 673225-674854 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSLT01000012.1 Thioflexothrix psekupsii strain D3 unitig_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 673225 28 100.0 36 ............................ GGGTACAAGTTATTTAGGTGTAATTATATACCGAAA 673289 28 100.0 36 ............................ CATATAATTAAAATATAATCATTTTTATTTAAGGTA 673353 28 100.0 36 ............................ GTGATGTGGCTAATCTGGTGGAATTCCACCAAATTA 673417 28 100.0 37 ............................ CACTGCGAAAGTGATGAACTTTGCAAGCTCAGCACTA 673482 28 100.0 37 ............................ TTGTAAGCGGTTAAAAATATCTACCAAAATCTCTTGT 673547 28 100.0 35 ............................ TGTTTCAATATTTTCAACAAATTTAACAATCTCTG 673610 28 100.0 36 ............................ AGAAAACCACACCCAGTCAAGCCCCATGATTAACAT 673674 28 100.0 35 ............................ AAAATCCACGCCGCGCTATCACCGAGCGAAAAGCT 673737 28 100.0 36 ............................ GGTTAAAAAGCTACAAAATTGGACTGAGTCAGAGTT 673801 28 100.0 36 ............................ TTCAATTAAGCCATCTTTTTCACTCTTAATAGCATC 673865 28 100.0 36 ............................ CATATCTAAAACCGTCACTTTTTTAAGTCCTACCTT 673929 28 100.0 36 ............................ TATGTAAGTGCCGACAACGCCTTGCGTGCAGGTTGA 673993 28 100.0 38 ............................ TATGCGAGCGCAAAGATAAATAAACAACAGATTAGTGC 674059 28 100.0 37 ............................ AAGTGAAAAGCCTACGTTTCATGAGATTCGCAGCTTA 674124 28 100.0 33 ............................ GTTTTTACAAAAGGCGACTATTTTAGGTTCTAA 674185 28 100.0 36 ............................ GGATAATACAAAAAATAGGTATTGACATCATCAATA 674249 28 100.0 36 ............................ TTAAATCAATGTTATAATTCATTGATTACGCTCTTT 674313 28 100.0 37 ............................ AGCCAAAAGCTATCGCGGAGCCATCTGAATTATCAGT 674378 28 100.0 36 ............................ TTTATTATTGACAGTTAGTAATACCTCATGAATCAC 674442 28 100.0 36 ............................ TAATAGAGGAACTAAAAAAGAGCGACGATGCGTCAT 674506 28 100.0 36 ............................ ACTACTGCCCTTCTCAAACAGTCCATACGCAAATCT 674570 28 100.0 36 ............................ TCCACATGCTCCTGCAGCCTCCAATTCATCTAATTG 674634 28 100.0 37 ............................ AAATACACTATTAACGGCATCACTAATGCCATTCTCA 674699 28 100.0 36 ............................ TAGGCTCTTTAACAACTTCTTTTTGCTGTATTTTTA 674764 28 100.0 35 ............................ GAATAGAAGTATAAGACTGGTACACAAACTGGTTA 674827 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 26 28 100.0 36 CTTTCTACCCCAAACGGGAAATTGAAAC # Left flank : GGAACGAGGAAAGAATTTGCTTTTCCTATTTTCCAGCACGAATCAATTTTGTCAATTCTCAAATTATCTCGTTATCTCGTTCCCACATGCCATGTGGGAACGCAGTCACGACGTGCCACGTCGAGTATAAACAAGGACAAATTGATACAGAATGGTGCTTGATTCCTGACGCAGCGCGTCTGGACTGCATTCCCACATGGCATGTGGGAACGAGGAAAATTTCAGGATTTTCAGAATCTAAAGAATTTGCTTTTCCTATTTTCCAGCACGAATCAATTTTGTCAATTCTCAAATTATCTCGTTATCTCGTTCCCACATGCCATGTGGGAACGCAGTCACGACGTGCCACGTCGAGTAATAAACAAGGACAAATTGATACAGAATGGTGCTTGATTCCTGACGCAGCGCGTCTGGACTGCATTCCCACATGGCATGTGGGAACGAGGAAAACGGGAAATTGAAACGAAGACGCTGCTAAAGTATTGAAACTGATGTGGTTA # Right flank : CCCTCCGAAAAATGCGGCTTGACGCTCGATTAAGCAAAGTAATATAATCAGTCATACTTTGTAACCTCTTGATTTCTCGTTACCGTATTCTTCGTTATCAACTTCGACCCCCTAGGGTTTTGGCGTAAACGGAGGTCGAAGTTGGGATATTATTTCATAGCCTCATCCAAAACGCAACAAAAAAACCCAACACGCTGGAAAAAAGCCCAAAATAAAATACAAAAAACCTAAGAAAAACTACGCATGAATCATACGACCATCCACCGCCAAAGCCACCTCATGCAAACCTTCAGACAACGTGGGATGACCGTGAATCGTGCGGGCTAAATCCTCACTACTCGCCTCAAACTCCATCGCCAACACCGCCTCACCCAACAACTCCGAAGCCGAAATACCGAACAAATGCACACCCAAAATCCGATCCGTCTGCTTATCAGCCAACATACGAATCATCCCCGACGTATCCCCATGCGCCATCGCCCGACCGCTGGCCGCAAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTACCCCAAACGGGAAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.00,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 3 821469-821250 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSLT01000012.1 Thioflexothrix psekupsii strain D3 unitig_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 821468 29 96.6 34 T............................ GCGTCATAAATAATCACGTTAATAGCTAACAGCG 821405 29 100.0 34 ............................. TTTCTTATGTTTCTGTTCCTGCACAAGAATCTTT 821342 29 100.0 35 ............................. AATCAAGCATTAGCATCATATCAAGAGGTGCTAAA 821278 29 75.9 0 ................CA.C....CTC.A | ========== ====== ====== ====== ============================= =================================== ================== 4 29 93.1 35 ACTTTCTACCCCGAACGGGAAATTGAAAC # Left flank : CGTGATTATTATTGACAGCACTGATCCTGTCGGCCCCGCGGAGGGATTGTTTAACGCGCCTTTTTATGCGGAATGTCGTCGCGTATTGCGTTCTGATGGCATTTTAGTACAACAAAGTGAGTCACCTTTTCTGCATTTCGACACATTTCGTGCGACAGGTGAGGCGATGCGTGCGGTAGGATTCACCGAAACGCAAGCTTTATTATTTCCCCAATGTGTTTACCCGTCGGGTTTATGGTCGGCGACTTTAGCCCGTTCGCAATCTTTAACCAAATACAGAGTGAAAGACGCAGAGCAGAAGTCATTTGATACAATGTATTATTCTGCGGAGATTCATGCAGCAAGTTTGGTGTTGCCCCCGTTTTTGCGGGGAAATGGTTGATTTATAGTTAAATTTATCGTCGAGTGGTGAGAATCTTTTACAGCCTTAGTCCATTGTAGGGGCATCAGGCTGTAAAAGAACTCCCAAAGTTGAAACTCAATCGCTGTTATTCTCTTTC # Right flank : TTTAAACCCTACCAAGCAACTCAAGAATTACGCCTAGAGAGGGCTTCAAGCATAAAATCGGTCAAATGCTGCCAACTATCGAATACTAAATATTGCATCAGGGTGCGTAACTGCTCAAAAAATGTGCGTCTTGATGGACACAAAAGACGTACTTTTTCATAGGTCTCATCCAAGTATTCTAGCATCGTATGCGTTAAATAAGCCAATAAAATCAACGTAGCCAGTAAGTTAGATAAGTGTTGCTTACCATGACCAAAGTTATGCTCAAAATGATAGCCGTTATTCTTTAGAATATTGTTGTTTTCATTTTCTATTTTCCAACGCGCTCTCGCTGCATCTGTCAGTTCTGCAAGGTTTTTTTCTGTTATTTTATGGGTGGTTATCCAGCTATTTTTGTATTTTTGCTTCCCTTGTCCATCAATTTCTACCAACTCGAACCAATTAACCATTAACGCATCGTTACCATCACGCAAAGGAACTTGATTCATGTAACGATAATG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:0, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTTTCTACCCCGAACGGGAAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 669480-670674 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSLT01000023.1 Thioflexothrix psekupsii strain D3 unitig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 669480 27 92.6 38 A..G....................... CCATCCGTGATGCCAATAGCGCAGAGATAATCACATAT G [669485] 669546 27 100.0 37 ........................... CAACAGAAGGGAAAATTGCCAGCGGTGAGTTTTTTAA 669610 27 100.0 37 ........................... CTTAGGTATTGTAAAAGCGCGGACAAACACTTTTGCA 669674 27 100.0 37 ........................... CTTTTCACCACCCGTCGTTATTAAATTCTCTTGAATT 669738 27 100.0 37 ........................... CCAGCCGCGCCGCAATTTTTCGCACGGAACTCACTGG 669802 27 100.0 38 ........................... CGCGGAATTTATTGCGCCCAAGCAACGCCATATTGATG 669867 27 100.0 38 ........................... CTTTAGATGAATTTAAGGGTGAAATTCGTGAGGATTTC 669932 27 100.0 39 ........................... ACCTCTCCGAACTATTCACTCCTCTTCGTTCGGATATGC 669998 27 100.0 38 ........................... ACACCGGGAAAGCCACCTTGTCAAATTACTGGGGAGGA 670063 27 100.0 39 ........................... ACCCGCCTGCAATAATATTGCCCAGAGCCATAATCATCT 670129 27 100.0 38 ........................... ACCAGCGCGGTTTGTGCATTCACCACACGATCCGATTG 670194 27 100.0 38 ........................... ACCGGGCTATACGCATAAAGGTGTACTCTAATTAGGAA 670259 27 100.0 39 ........................... ACGAGTTGCGTTTACGCAGTCGTTTTTTAGTTCAAAATG 670325 27 100.0 38 ........................... ACTACAGAAATGTACGCAGATTATTCAGCCGTGTCAAA 670390 27 100.0 38 ........................... ACCAAAGAAAATTAGCGACATTACTCAATTGAACAGAA 670455 27 100.0 38 ........................... ACAAGTTGACCAAAGCTGCTTTGGATAAGATGAGTGAA 670520 27 100.0 37 ........................... ACATCTTACTAAAAGTAAATCTAAACCTAAAGCCTCA 670584 27 100.0 37 ........................... ACATCTTACTAAAAGTAAATCTAAACCTAAAGCCTCA 670648 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ======================================= ================== 19 27 99.6 38 CTTTCTACCCCGAACGGGAAATTGAAA # Left flank : ATTGATTAAGTTCATAAAATAGCGGATAAATCTCAGTTTCAGGAACGGTATCCAGTAAATTACGAATTTGATTCATACTGGGGATTTTATGTATGCCAAAAATACTTTGGGCGTTATTTTTCCCGTGTGCTTTTTCCATTCGAGTTTGATAATCGAGAAAAGAAGAGCTTTGTGTGAAAAAAACAGAAAAAGCACTCAAAAAAGCATCACTCATGCTATAGTTGAGGCACTATAAAAAGATAATCTGAACCTGTCAAATTTGTAGGAAACTTCACAGGTTTGAATATTCTTTTTACGTTGCGGTAGCTATATATTTAAGGTTGTTCGCTGTTTTAGTCTTACGACTATCAGGCAAATTTTCAGACATTTCTATTATTCGACCAATCAGGTAGTCAAAAAAATATTGCTGATTTTTTTGGAAAAATGCTTCGAGTTTGTTCATCATCTTTACTTTCAATCAGTTATAAAAACATTGTTGGTTGTAAGGGTTTAAATTGAGA # Right flank : AACCCTCCGAATTATGCGGTTTGGCGGCGTTACGACTAAGTCGTGTAGCACTGAAACACAACGTAAGTTGTTGATTTTTCATAGACCGTATAACTCTTCTCAACTTCGACCTCCTAGGGTTTTGGCGTAAACGGAGGTCGAAGTTGAAGCTATTCTTCCATACGCCTCTTAAAAAGTCAAGAAAACGAATTTAATTCAAAAAACAATTAAATATCACACCAAAAAATATTACAGCTATCTCACAGAATTTTACCCAACGAGCAAAATTTTGGCAAATAACTAACAATAAGACTCAAAACAAACATAAAATATTTTCACAAAACACCATAACAGCCCACAAACCGAATTCACACCAAACAAACACCACTTAATTGGCCTTTTCCAAACACAAACAACGGCTACTAACTTTTGAACTGAATTGAACTGAACCGCATCGAACGTGCTTTTTTTCAAGATGTCGGGAGGAATTGAAAGACAAGGATAACTTTTTGATTAGAAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTACCCCGAACGGGAAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.00,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 52045-51445 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSLT01000018.1 Thioflexothrix psekupsii strain D3 unitig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 52044 28 96.4 34 ..............T............. TAAGCCCAAAGAAATGGTTAAAACCGCTTGGAAT 51982 28 100.0 36 ............................ TTATGTCCTTTCGCAAAATGATTTCTGATTACATTA 51918 28 100.0 36 ............................ GATATTATTGTTTCTTTTCATACCGCACCAAGCGCA 51854 28 100.0 36 ............................ GAGATTCAGGGGATTTTGTCGTGTAATCAGGAACAA 51790 28 100.0 36 ............................ TACCAGTTTGGCGAAGAAATTACACTGATAGGCAAG 51726 28 100.0 36 ............................ ATTCCTTTTTTGCCGCTTTACTTGGTATCGATGCCT 51662 28 100.0 34 ............................ AAAATATCAATAAAATTGAAAAAGCTGATGCGGT 51600 28 100.0 36 ............................ TAATAGAGGCATTAAATAAGGATGATGATGCTTCAT 51536 28 100.0 36 ............................ GCCTCTTATACCTTCAGTGATGCACTACAATTTTTA 51472 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ==================================== ================== 10 28 99.6 36 CTTTCTACCCCAAACGGGAAATTGAAAC # Left flank : CCTAAACCCGCTTGCTTCAACATGTGTACCACCCAAACATGCGAGTAAAAAAGACAGCGAACGGGACGTGATGTCTGTGTCATTGTGAATCCAACCCATGAATGAATATAAAGTAAAGCAAAACAATATGGCCAACAACCCGTAAAAAAAACATCAATACATAACTTATTGTTTTCAAAATAATACTAATTGGCAAAAGTATGTGAAAAAAAACTTTTTATGTCAATCATTTTCCGTGTTTGCTCGTTCCCACATGCCGAGGCAGCAAAAGAACCGCCTTGACCATGAGTTTGGTAGTCCTAGCCAAGTAGTGATATGAATAAAATTATCCCAAATCTAACGATTCGTTATCATGGTGAATTATGATTTTCTAATTTTTTAGAGAAGGATAGCGTTTCTCTGACTAAGCGAGAAATACGCTGTCTGAGAGTGCAATTAAGACGTTCAACAAGGGAAATTGAAACAAAAGATAAGCGGGTCTAAATCGAAAGTACGGGCAT # Right flank : CCTCTGAGTTATGCGGTTTGGCGGCGTTACGACTAAGTGGCGTATCACTGATATACAACGTAAGTTGTTGATTCTTCATAGACCGTATAACTCCTTTCAACTTCGACCCCCTAGGGTTTTGGCGTAAACGGAGGTCGAAGTTGGGACTATCCTCCCATATTCCTCTCAAAAAGTCAACAAAACGAGTTTGCTTAAACCAAAAATAAAATGTTATGCCAAAAAATATTACAAAACCTCACTCCCCTGATGACCGTCATCGAGTCGGGATTTTTGATGTTCCACGAATTCCACCGTCACATTGTGTCGATTCTCTGTAGAGACAAAAGCCAATCGATCATCATCTTCAGATAATTCAGCCAGTTCACGACGTAAACGCTTATAAGTCGCTTCCGTCAAATCACCACAAAACACACTATTCTGTCGCCAGTGGAGATAGCGAGCCAGTAATTTATAGAACAAACGGGTTCGTTTGGCAGGAACATCATAAAAAACAACCACAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTACCCCAAACGGGAAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA //