Array 1 8715-10618 **** Predicted by CRISPRDetect 2.4 *** >NZ_OETF01000040.1 Salmonella enterica isolate STY111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 8715 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 8776 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 8837 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 8898 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 8959 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 9020 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 9081 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 9143 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 9204 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 9265 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 9326 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 9387 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 9448 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 9509 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 9570 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9631 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9692 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 9753 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 9814 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 9875 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 9936 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 9998 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 10101 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 10162 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 10223 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 10284 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 10345 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 10406 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 10467 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 10528 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10589 29 96.6 0 A............................ | A [10615] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8955-7462 **** Predicted by CRISPRDetect 2.4 *** >NZ_OETF01000010.1 Salmonella enterica isolate STY111, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8954 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 8893 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 8832 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 8771 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 8710 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 8649 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 8588 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 8527 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 8466 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 8405 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8344 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 8283 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 8222 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 8161 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 8100 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 8039 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 7977 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 7916 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 7855 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 7794 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 7733 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7672 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 7611 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7550 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7489 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //