Array 1 42588-47626 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAEK01000052.1 Neisseria flavescens strain CNF seq0123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 42588 32 100.0 33 ................................ ACAAATTAAAGTAAGTACACCGTCTGATAGGCA 42653 32 96.9 33 T............................... CTTGCAAGTACTTTATATTTTAGGCATAGGGGT 42718 32 96.9 33 T............................... ACGATCCATCATGCCGACGATTTCCGCTTTCGA 42783 32 100.0 34 ................................ ACTGATACCGCTACCCCACGACGTGTCATCCATC 42849 32 96.9 33 A............................... TAAATTTCAATGAGCGATAGGAAGCCCAAATAC 42914 32 100.0 36 ................................ AGATTTTTAAAACTACCTTCCTGCCTCTTAGGCTTT 42982 32 96.9 34 A............................... AGTACAGGTGGCGCATGTCCTCAAGATATAACTT 43048 32 96.9 33 T............................... CAAGACGTCTGTTGTGGTATCGACTGCGATGTC 43113 32 96.9 31 A............................... TACTGTAGGTTCTACCGGCTCTTCAGGTTCC 43176 32 96.9 36 A............................... AGTTTCAGCAAGCGCGGAACGCGCTCTTCCTTGTCT 43244 32 100.0 32 ................................ TCCGTTTGGAAATGGCGATGGCGAGCCAGACT 43308 32 96.9 33 G............................... GCAGAATGTTGGTGGCTCGGTCGGCAAACAGCT 43373 32 96.9 34 T............................... ATCAATCACTACGACAGAGCCGTTGTTTTCTGGC 43439 32 100.0 34 ................................ AGGTCAAAAAGGAACAGCAAAGACGTAAAGAGGA 43505 32 96.9 36 A............................... ATGTCGATGTGTTTCAAGCTCAGCAACATAATCGGG 43573 32 96.9 32 G............................... ATCCTTACAAGGATAAAAAAATGAAACGTCAA 43637 32 96.9 34 A............................... CCATCGTTGACCGTAAAATCGACCCTTGCCAACC 43703 32 96.9 33 G............................... GGGAAGTTATTGCTTGCACGCAATACCAAACCG 43768 32 100.0 32 ................................ AATAAAGATTGGAACTGGCGTATAAAAAAAGG 43832 32 96.9 34 T............................... TTAAATATGAACTAAAACCTTTTAAATATGTACT 43898 32 96.9 33 A............................... TTCAGTAAAAAAGGAAGCATCGAGAAAGAAGAC 43963 32 96.9 36 G............................... ATTGTGGTATGAGGGTATTGTCGAGCATCATCCGCT 44031 32 96.9 32 G............................... CCGATGGTTGATTTAGAGATTTTTAGATGGGA 44095 32 96.9 32 G............................... CCGATGGTTGATTTAGAGATTTTTAGATGGGA 44159 32 96.9 35 G............................... TCAGCCTATCCCATAATCATCTTTTAGTTTACGCA 44226 32 96.9 33 A............................... CAATCTAACCAAACCACCACTCCTCCAAAGTGA 44291 32 96.9 34 T............................... AGCCCCTGTCGCACAGCAGGCAGAGGGTCGGCGG 44357 32 96.9 36 T............................... AGTAATGCCCGCGCCCGAACTATTGCCCGAACTGAG 44425 32 96.9 33 A............................... ACATTGCGAGAGTGGGCGCGGATTTGAACATAA 44490 32 100.0 33 ................................ ACGTCGCCATAAGGGACAATTTTCAGGCGGCCT 44555 32 96.9 34 T............................... GTGGCTTGGCACGCCGTACCATCATCAAGCGATG 44621 32 96.9 33 G............................... CTTATGGTGATGGTTCAAATTTTTGTCAGATTT 44686 32 96.9 34 A............................... GGCATCAAATTCGCTCCCCAAATCATTTTTAGGG 44752 32 96.9 32 A............................... TTCAGCAGGTTTTTGACAGGTAAAAAACGCCT 44816 32 96.9 33 G............................... CGTGCATTTTTACCGCGTCTTTAGGGCGTAGGC 44881 32 100.0 34 ................................ TTGCCATATTTATCAACCAAAACATCATCTAATT 44947 32 100.0 34 ................................ CAAATTGACCGAAATCTAAAGTTATATCTTGAGG 45013 32 96.9 33 G............................... CGATTCTTGCCGCCTTATGAATTGTTTGGCATT 45078 32 96.9 34 G............................... ATCGCTATCTGAAGCTAATTGCACATCCTCATAT 45144 32 100.0 33 ................................ TTTGCTGGTGCAATAACTTGAGTTTGCATGATT 45209 32 100.0 33 ................................ TTTAACGTATTTTGTAAGTATTTGATTTTTATA 45274 32 96.9 33 T............................... GGTTTCTGAAGACAAAGACGAAGATGAAGACGA 45339 32 96.9 35 A............................... TGTAACCACGATATGGCAGTCTTAAAGTCACCCAA 45406 32 96.9 35 A............................... TAAAAAACTCGAAAATATTTACGTTAATGAAATGA 45473 32 100.0 33 ................................ TTTATCATGCTCTTACTTTTCCGCGCGAGAACG 45538 32 96.9 35 T............................... GTCGATAACGATAGAACCGTTACCAATTTGTTTAC 45605 32 100.0 36 ................................ TCTCGTATTTTTTTGCGGATTTGTATCGTTCCAGCC 45673 32 100.0 34 ................................ AGCTCGTTTCTGTTTAAATTCATCCCAGAGCTGA 45739 32 100.0 33 ................................ CCTTTGCCAGTATATTTATTTCCCTCAAAATCC 45804 32 100.0 35 ................................ TGGCCAAAGCCGTCATTCTAGGCGGACCATCAATG 45871 32 100.0 35 ................................ TTTCAGTCCATTGCCAATGCCTGTAGCTATATCTC 45938 32 100.0 35 ................................ AAGCAGACTACGACAATAAATAAACCTATAAAAGC 46005 32 100.0 35 ................................ AGCCTGTAATGGCTATGATGATATTTAATATTTAA 46072 32 100.0 35 ................................ TGACAAGTTGAGGAAATGCATTCATGCGGTAGGCA 46139 32 96.9 33 ............................G... TTGTGTGTTCTTCGGCCGATTTGTAAACGCCAA 46204 32 100.0 35 ................................ AATAGAAAGAGTTAAGGAAGTAGCAAGTAATCAGG 46271 32 100.0 35 ................................ CGTCTCGTTACTGGCTTCATGCGCGGTTAAGAAAC 46338 32 100.0 34 ................................ ACAGTTGAACTCGTTTACTGGAAAGAAAGCGTTG 46404 32 100.0 35 ................................ CGCGTATTTGGTCGTCACCCCACCCTTGCAATAGC 46471 32 100.0 35 ................................ ACACGTTACGGTGTGATGTTGTAAAAAAGGTAAAA 46538 32 100.0 34 ................................ AACTTTTTCTGTTTTAATGATGGTTATTAAGAAT 46604 32 100.0 34 ................................ AGGCCATCTTCTGCTTTTAGTACAGGTGGAGCTT 46670 32 100.0 35 ................................ AACCCCTCAAAAACTAAGCCGCCCGAGTCAGCACG 46737 32 100.0 33 ................................ TACTCGGAGTGGGCTGGCGGTGGTATCAAAGAC 46802 32 100.0 33 ................................ ATTTCTGAATAATTTAATTCAAAAAAATATGAA 46867 32 100.0 35 ................................ AGCGATTTAAAATATGGCACAGAACATGGCACAAT 46934 32 100.0 33 ................................ AATATCAATTTCCGCTTCAAACGGCAAAGGAAT 46999 32 100.0 35 ................................ GCACGCCTAGCGGTGTTTTGTGAATGTGATAATGT 47066 32 100.0 34 ................................ ACGGCGATAAAATCACGGCAAACACGCTGAACGC 47132 32 100.0 34 ................................ TTCTGCCATTAGGGTCAAGCCGAAGCTGGCAGGC 47198 32 100.0 33 ................................ AGGGAATAATCTATACAATTCGTAGTTTGTTTT 47263 32 100.0 35 ................................ AAGAAGCACGCTTGTGGTAGGTGGGCAGGAAAGGT 47330 32 100.0 33 ................................ GATATGTACCATTCTGAATGGCGTAGAATTTTA 47395 32 100.0 35 ................................ GGCGGTCATTTGGGTCTCGCGTGCGTGGGAAAGGT 47462 32 100.0 34 ................................ ATCAAGAGGGCGCAGGCGAGAAAGAGGGCGATGC 47528 32 100.0 35 ................................ CCTAATTAACCTTTCCGCCCTCGTTACTTAGGGCT 47595 32 100.0 0 ................................ | Deletion [47648] ========== ====== ====== ====== ================================ ==================================== ================== 77 32 98.6 34 CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGTATATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGACAAGCAAGGCTGCGGCGCGTGGCGAAATTGTGTCTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTTTAAAAGACAAACTTTTGAAAACCTACAACCCTGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAGCCAGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGTGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTACGCGCTTTTCTTGGGAGCTTAGCGAAATAGGGGCTGCGAAACCTGATGGAGCAAGACTTTTGAGAGAGGC # Right flank : CAAAGTAAGGCATTTAGTGGCACAAGGTCGTCTAAACCAGCCGGCTGGGTGTTGAAACTCTGCCACCGTATCTCATGTCTGAGTAAGGAAGAGGGGCTGTATGTTCAAATATCGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCTGTGAAGGATATTAGAAGCAAGTTATAAAGGTTAATCGATAACAATGCCGTCTGAAACTTTTTCAGACGGCATTTTTTATATTTACATATTAAATTTAATATCATATTATCATTGAATCTATATCAATTTGAATTTTTTAGAATTTCAATATGAAGCCCCTAATTTACTACGCCCATTCCGCCCAAGACAAACTTGGTAATCTCTTGCCTTACGAACATTGGCAAACCTTACAAAGCCATTCGGTAAATGTTGGGGAAATGGCGGTGGAGTTTGCTCAGGTATTCGGTGCCTGCCATACTGGACAGCTTCATGACTTAGGGAAATATTCTG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //