Array 1 168549-165899 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYU010000003.1 Klebsiella pneumoniae strain 1977 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 168548 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 168487 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 168426 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 168365 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 168303 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 168242 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 168181 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 168120 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 168059 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 167998 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 167937 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 167876 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 167815 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 167754 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 167693 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 167632 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 167571 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 167510 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 167449 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 167388 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 167327 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 167266 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 167205 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 167144 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 167083 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 167022 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 166961 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 166900 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 166839 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 166778 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 166717 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 166656 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 166595 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 166534 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 166473 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 166412 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 166351 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 166290 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 166229 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 166168 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 166107 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 166046 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 165985 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 165927 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2388-3390 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYU010000051.1 Klebsiella pneumoniae strain 1977 51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2388 29 100.0 32 ............................. CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 2449 29 100.0 32 ............................. CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 2510 29 96.6 32 ............A................ AGCAACGTTTCCGGATTATATGGCTGGAACGT 2571 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 2632 29 100.0 32 ............................. TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA 2693 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 2754 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 2815 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 2876 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 2937 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 2998 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 3059 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 3120 28 93.1 32 .....-.......C............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 3180 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 3241 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 3302 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 3363 28 82.8 0 ............CAC.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 94.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //