Array 1 163811-162035 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOZN01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain s01 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163810 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163749 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 163688 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 163627 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 163566 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 163505 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 163443 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 163382 29 100.0 26 ............................. CGTCACTACCGAGACCGAGACCGAGA 163327 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 163266 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 163205 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 163144 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 163083 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 163022 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162961 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162900 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162839 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162778 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 162716 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162613 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162552 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162491 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162430 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 162369 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 162308 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162247 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162186 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162125 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162064 29 96.6 0 A............................ | A [162037] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180885-179942 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOZN01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain s01 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180884 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180823 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180762 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180701 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180640 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180579 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180518 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180457 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180396 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180335 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180274 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180213 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 180152 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 180091 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 180030 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179969 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //