Array 1 40183-39739 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB904747.1 Thiofilum flexile DSM 14609 A3IKDRAFT_scaffold_1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 40182 36 100.0 33 .................................... CTACAAAAGCTTGGTATAGTAGCATTTCTGCTA 40113 36 100.0 33 .................................... CCGTTATTTCTGACGAACTCCTTTATTACTATC 40044 36 100.0 33 .................................... CTACAAATAGGTGGATCAATACCACCGCTATTA 39975 36 100.0 32 .................................... GAACGATGCTACTGATTTGCTCATAATTACTT 39907 36 100.0 30 .................................... ATCATTATCACTAAAAAATTCATTATTTTC 39841 36 100.0 31 .................................... TCCTTGAGGTCGCTTCTTTTGTTACTGTCTG 39774 36 86.1 0 ...........................C..C..GGA | ========== ====== ====== ====== ==================================== ================================= ================== 7 36 98.0 32 GTCGCAGGGGCGGGTCGCCGCTAAGGCAGTGAGACT # Left flank : CGAGCTATTTTTTACGGTGATCCGGTGGTGGAGGCTGTGCTGGGGTGGCTAGCCGCTTCGGTACGGAAACCGAGAGTGCAGCCCCTATCCTAGTGCAATGTTGGTGGGTATGGCTGGGTGAGCGACAGGCAAGGTCGCTGAAAGGGTGATGGTTAGTCTTGGGTTAATGATGTATAATGAGGCTTCCGCCTCTGCGGTCGGTGAGAAAGGCTGATTTGATTAAAAATCAGCAAGTAGTTGATAAATTTGAACTTGGTGAGTCTATTGATCAATAAATATTCACATTAAACATGCGATGAAAAAGTCCTTGTTTTTTAGCCGTTTAGGCAATTTTTCGTGAATTGACTTTAACAATCCGTCACCAAGTCTTTTAAATCAACAAGTTAAGATATTTTAGAAGCCCTTTTTGTATGCAAATTGTACTGATTTTTCAATGCTGCCTGGAGACTCTCCCATTTGCTTTGCAAATGATTGATTTTAAAGGTAGAAAAATGGGTGCA # Right flank : TATTACTTGCCCCAAAAACAAAAAAGCCGGATTACTCCGGCTTTTCTATTCAACCTCAACAAAAATACTAGTCTACAGCACCGATAAATCAGCCACTTGCAGGAATAACCCGCGCAACTGATTCAATAAGGCCAAACGATTATCACGTAGCTGCTCATTCTCATCCATGACCATTACATCATCAAAGAATTGATCCACAGGCGCTCGTAAGGCCGCTAGGGAGGTCAATGCTTTTTCATAGTTACCCTGAGCAAATAAGGGTTGGACGATAGTTTGTTGCTCGGATACCGCTTTAAATAGCGCTTGCTCGGCAGGCTCTTTTAATAGCGTGGTATTCACCGCAGCTGGAATAGACGTCTCGACTTTCCGCAGAATATTAGAAATCCGCTTATTCGCCGCCGCTAAACTATCCGCCTCCGGTAAACCTTTAAACGCGGCAACGGCTTTGACGCGCTGATCAAAATCGAGGGGTTGAGTGGGTTTTAAGGCCGCCACCGCCT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGGGGCGGGTCGCCGCTAAGGCAGTGAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 49439-49817 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB904747.1 Thiofilum flexile DSM 14609 A3IKDRAFT_scaffold_1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 49439 36 100.0 33 .................................... AACCTATGGAGACATCACATGAAGAACGCTATT 49508 36 100.0 31 .................................... GGATATAGAAATTGGCACCAATGCCCTTGAG 49575 36 97.2 33 ...................................G CGCCCGCTGTTCCGGGGCCGACGTGCCCTGTAC 49644 36 100.0 34 .................................... TATGTCTTGATCTCAAGGAGATAAAATATGAAAG 49714 36 100.0 32 .................................... GGTGTGTTCACAACTCCCGGCGAAACTTCGTC 49782 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ================================== ================== 6 36 99.1 33 GTCTCACTGCCTTAGCGGCAACACGCCCCTGCAACT # Left flank : GGCGGAGCTGGGTATATAGCTGTTCTTTGGCGGCTAATAAATCATTGGCCTTGGTATGAACCACCATAAAGGTGAGTAGGTGAAAGGGTTGGTTTGAATCTGGTGTGGTGAGTTTACTTTTAATGGCAGCAACGGTCTGGGCAGCATCGCCCCCTTTTAACAGAAACAGGCCGGATGAGGCACCGCTGCTGATACATACTACGTGGTCTTTGAATGACTCTTTGATGGTCTCAATAGCATCTTTATATAAAAAACTGCTGCCACGAATGACGCTGAGCTGGTCGGTATCGTAGATATTGGCGTAAAGATTGACGCCCTCCACCAGAATGAAGTGATGTAAATCAGACATGCTTCGCCCTTGATTGTGGGAATGGGGTTGTGGGTATACCGATTGGGTACGGAGAAATACCCACAGAGCTAAGCAGGAATATAACGGAAAGAATGAAGTTGAGCCAGCAATAGTTAACTACTTATTAACTATTAAAAAATCGAGGGGCTGT # Right flank : GGCACCCATTTTTCTGCTTTTATAATCAATCACTTGCAAGGCAATTGGGAGGGTCTCACCCTCAACCGGAAAAAGTAGTGCGGTTTTCATACAAAAGCATCCTCTGATAAAGCCTAACTCATTGATTTAAAAGAGTTGGTGGGGCATTTTTAATGTAACCTATTAACTTTCAATGCTAAACCATTGAAAAATAAGATCATCCATTTTACTTCCGTTAGCCGGTTGAATTATCCCTAGGAGACCCACCAAGTCCTTTATTTCAATTACTTGCTGTTTTTCAATCAAAACGACATCTCACAACAAGTTACAGGGGCATGAGGAAAGTATAGGCTAATCGCCGCCATGGAAAAACTTATTTTTTATCCAACTGGCTGCTGCTGGAATACACAAGTAAGCAGCGCCAACTAACAAACCAAGTATAAGCAATAGGCCTATCCGAATACCTAAACTGATCGAGCATTTAGGAGGATCAGCCTCCAGTCCTGCCGAGGTACAACTAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTGCCTTAGCGGCAACACGCCCCTGCAACT # Alternate repeat : GTCTCACTGCCTTAGCGGCAACACGCCCCTGCAACG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 2117-3049 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB904758.1 Thiofilum flexile DSM 14609 A3IKDRAFT_scaffold_2.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 2117 36 100.0 33 .................................... GCCGGTGTTATTTCTGTAACCTCATCACTATTG 2186 36 100.0 32 .................................... CTAACTATGGCTAAAGCCAGATAGGTTACTGC 2254 36 100.0 33 .................................... GCCGGTGTTATTTCTGTAACCTCATCACTATTG 2323 36 100.0 32 .................................... CTAACTATGGCTAAAGCCAGATAGGTTACTGC 2391 36 100.0 33 .................................... AGTTAATTCTGTTGTGCCACGACATGCGTAACA 2460 36 100.0 33 .................................... ACTGAGCCTCTGGCGCACAGGTAACAGCATAAA 2529 36 100.0 35 .................................... AGTCTGCTGATGCCTCTTTCTCTCAGCTCTGTAGT 2600 36 100.0 33 .................................... GTCATCGACTTCCACCACACATAATTGTTTATT 2669 36 100.0 33 .................................... TGAACACAGGTGCCGGTTGACCAGCGTCTATGA 2738 36 100.0 33 .................................... TGAACACAGGTGCCGGTTGACCAGCGTCTATGA 2807 36 100.0 33 .................................... AATAGCGCTAGGTCGCGGCCTGCCAGTCTATCA 2876 36 100.0 33 .................................... CGTGCAAGCAATTGCCCTGCTGCCTCATTAATC 2945 36 100.0 33 .................................... GTAGGTGTCCACTACGGCATACATTTGCGTTAG 3014 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 14 36 100.0 33 GTTTGAGTATCGCCCTGTTTGAGAAGGGATTAAGAC # Left flank : CTAGCACTGGATATGCTGGAGACCTTTCGTGCCAATGTGGATACACTGGTTTTGGAATGGCTACAACAAACACCGCTAGACAAAAGCAGTTTTTATTATAATGAGAGTGAAGGCTGTCGTCTAAGCAAAGCCACCCGACCACTATTTTATGCTGCATGGGCACGCTGGCGGCAGGATTGTCCGCGTCCTTTTGCTGCTACAAAAGATGCGGAACATTGGCCTCGTGCTAGCTTATCTGAAATCATCAATGGGCAGGTTATTCGGTTACGGGAACAGCTAAAACAGGTGGATGAGGGGCTGGCTTAAGGGCGTAAAAACACTAGTCAGAGTTCATAACTTGTTATATTATTGTACGCAACTTTCGACTTTTAGTCGGGGGTTTTGAGGTCTATTTTTACTCAAATCACGTTTTTTAAAAGCTAACTCGGAAATGCCATTTTGATATCAAAATTTATACAGCATAAGTTATTGAAAATAAATGGATTCCGACGAGCGGCGGG # Right flank : CCGACTCTTGGTAACTGCCACTATGCACATAGTGGTTTCAGTTTGACAAAAAATGTCTTCAGCAATCTATAAAAAATATCATATCTATCTGATACCTATATCATTACTAGCCAACTAGTATTTACGATGGATACCCAATATGGGTAGTTTTCTAGGTAGGCACTAATCTCTACAACTCTCAACCTCACCCCAATAGTGCATTAAATATTTTTTGCTCTCACAAGCTTGTGAAGCGTGACAATCTGCCGTTTATCGGGATAATGTGAGGTATAAACCCTTTTTCCCAATCAAAGGCTAGTTATGAAATTGACCTTCAAAGAGCCGCATATTATTAGGGCGACTTATCGCATTGTCACGCCGATGTTTATTGGTGATGCCGAACAAAAAGCATCTGGTATTTCTCCCGCCTCAGTCAAAGGGGCATTGCGTTTCTGGTGGCGAGCGCTGAACTGGGGACGAATTCGCTCGCAAATCCAATCAGATCGAGAGGCACTGCAGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGTATCGCCCTGTTTGAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 5292-6663 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB904760.1 Thiofilum flexile DSM 14609 A3IKDRAFT_scaffold_21.22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 5292 28 100.0 36 ............................ TAGCATCCTCGCTTAATTGCGTAGGGCACTTTGTAC 5356 28 96.4 36 .................A.......... CTTTTGTGTTTCGGCGAGTATGTCCATACGTCAGAT 5420 28 100.0 36 ............................ ATGAAGAAGCGCAAGTGTCACCTCTCAAACTTTTAT 5484 28 100.0 35 ............................ AAGAATTTATAGTCTCCTATGACGGAGTATTTTAT 5547 28 100.0 35 ............................ CTAATTGATAAGGATGATAAGGCGGACTCGGACTG 5610 28 100.0 36 ............................ GACTCAGCCACGGACAGCTCAGGGGATTTATGCGTT 5674 28 100.0 37 ............................ CGAACGAGGCTTGAGCCACTGGGCGGCTGCCGCCATT 5739 28 100.0 37 ............................ CCTCGAAGAGGATGGGATTGTCGGGCGCGATGCAAAG 5804 28 100.0 36 ............................ TACGTTGAGTCAGTCAAAGAAGGGACTACGCCCGAC 5868 28 100.0 36 ............................ CAAGCCTCTGAGTTCGTTCTCTTGCTGATAGGTAAT 5932 28 100.0 36 ............................ GTCGATTTTAGTCGTAGGGATATTATCCCCACGCAA 5996 28 100.0 36 ............................ GATATCCACAGCCGTATAACCCGCCACCAGCGAGCG 6060 28 100.0 36 ............................ ACTAATCAAGAGCCAGATTTTGGTACATCGTTAGCA 6124 28 100.0 35 ............................ TACCATGCAGAGCCATCACCCAATCCTCGTGCTTA 6187 28 100.0 36 ............................ GTTGACATTTATTTTACCAATACCGCGCATGAGCTA 6251 28 100.0 37 ............................ TGAGTGATTGAGTGCCCAATCCGCTCGGATTGGACGC 6316 28 100.0 36 ............................ ACCTCATCAATAACGAAGGCGACGGCGAAACCGTTT 6380 28 100.0 36 ............................ GATTGATCCTAGTCTCGATGCTGCACCCGTGCCACG 6444 28 100.0 36 ............................ TATTTTTTGGAAGCTGAACGGGTTTAATTCGGAGAA 6508 28 100.0 36 ............................ GGATGGCACAATTGTGGGACTGGACTACCTCAAAGC 6572 28 100.0 36 ............................ GATTAGTAAAGTGGACGCAGCAGCTCGCAAGCTCAG 6636 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ===================================== ================== 22 28 99.8 36 GTCATAACCCCGCATGGGGATTCGTAAC # Left flank : ATGCTGGGCATAGAGATTTTCACCGCAAATACGCCAATCGGGCGGGATTTCGTGCTTGAATTGACCGTACCACTGCTTGACCCAATCTCTTGAATCATGATGGCGACTATCGATGGAGCGGGCGTGCATACGATCTCGATACAGTGAAGTATTTTCGCCATCCATTTTTTCGGTGACAACGACTTCAAGCCCGACAAACTGCTGGGTATTAATAATGCGAATATCATCACTAGCGACACTTGCCGACCAAGGCAAATGCGGGGTGCGCGGATATTTATAGACTGACATAGCCTGTATTCCTAAAACCATTAAAATACTAAGCACAAGCAAAACTGTCTCAGATAGGACTGAGCAGGCAGGTGCGATTTTTTGAGATTTGGTTTTGGATAAGTAACTACATGGCTATTAAGAATAGTTAAAGGTTAATGGTTGAAGATAAGTTTTCAATATTAGTTTGATTATATCACTTGCCACAAGTTCAAAGTAGATCAGTTGATGCT # Right flank : CCCCTGATTTCAGCGTATCTCTGGTTAAATACCACTGTATCAAGCACACAAAATCTAACATAAGCCTTTGATTCATGTCCATCAGTGTCCGGGGTGAAATACTGCATTGGTGGTCGAAGTTCGACTCATACCTGCCGGATAACTCAACAATTATCCGGCAGTGCTGGACTAATAACCTAAGCTACTAATTCCAAAGCTTGATTCAACGTCGAACTTGGACGCATCACCGCACTCGTTTTAGCCGGATCAACTGCATAATAGCCGCCCAGATCAACCGGTTGACCTTGTACGCCATTCAACTCCGCCACAATCTTAGCTTCGTTTTCGGTCAGTGCTTTAGCTAAAGGTGCAAACTTCGCGGCTAATTCCGCATCTTCGGTTTGTGCTGCTAACGCTTGTGCCCAATACAAAGCTAAATAGAAATGGCTACCACGATTATCAATCTCACCCACTTTACGCGAAGGTGATTTATTATTATCGAGTAGTTTTTCCGTCGCCTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATAACCCCGCATGGGGATTCGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 9695-10632 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB904776.1 Thiofilum flexile DSM 14609 A3IKDRAFT_scaffold_36.37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 9695 36 100.0 34 .................................... CTGTACCATTGCCCTCTCATGACCTTATTTTTTT 9765 36 100.0 33 .................................... GGTTCAATCTCCACCAGCACAACAAGGACAGAC 9834 36 100.0 33 .................................... TGAAATTTTCCTTAATGTTTTGCGATAGATATA 9903 36 100.0 33 .................................... TTCAACTCGGATGAAGTAAAGGAATTATTAACA 9972 36 100.0 33 .................................... TAGATAGCCTAATGCACTGAGATAACCCGCTCG 10041 36 100.0 33 .................................... GCTTGAGTCACCACAACCACCTCACTACCGTGA 10110 36 100.0 34 .................................... GGTAGAGATATTTTCAGCGTACTCCAACAGTCCT 10180 36 100.0 33 .................................... TGCAGCGGTTGCGAGCTTCCGCATGTTCTTTCG 10249 36 100.0 34 .................................... ATGTCCGGCAGTTCGAGAACCGATAAATCGTCCC 10319 36 100.0 34 .................................... AAACATTTTCGCTTGTTTGGGATAGAACATCTCT 10389 36 100.0 35 .................................... GAGACAAGCATGGAGTGTTGAGTGGGTAGAGAATC 10460 36 100.0 33 .................................... TATCGAAGAAATTAGCTTGTCCAGCACTTCCGA 10529 36 100.0 32 .................................... TTCACTGTCGACTGCTTTGATCTTTTTGAAGG 10597 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 14 36 100.0 33 GTTTGAGTATCGCCCTGTTTGAGAAGGGATTAAGAC # Left flank : CTTTAGGAGTACTCGATCAGATTCAAGCTCAGCATGACATTATGGTGTTAACCCACGATCACCAATTGGATTTTGAGGTAATCGAGCAGCTCTTGACGCAAAGTAGGGGGCGTTTTCTGGGGTTGATTGGCTCTGAAACGAAAGCGAGACGTTTTCGGCAGCGTCTTGCTCAGGCAGGATTTGAGCAGGCTAAGATTGAGCGTTTAGTTTGTCCCGTTGGCCTAAAAGAAGTGACAGGTAAGCGCCCGATGGAGGTGGCAGTGTCGATGGCAGGGCAGTTGATTAGTCTGTGGAATAGCTGAGGCGTAAAAATACTAGTCAGGTGCTAGCGCTTGTTATATGATCATCTACAGTCATAGATCCTTAGGTCTGGGGTTTTTGATTGATCTGTTTTTACTCAAATTATCGTTTTTTAAAAGCTAACTCGGAAATGCTATTTTGATATCAAAATTTATACAGCATAAGTTATTGAAAATAAATGGATTCCGACGAGTGGCGGG # Right flank : CCATCGTACTGATACCAAACGGTGCGCAAGGATGACAGTTCAGCCAAAAAACCTCGATACAGTTGTCTCTAGCCCCTAACTGTACTGCTAATAAAAATTAATTCTAAATCTGTGCTGCTTCGTGCTGGCTCTCTACACTACTCATCCGAACACACCGTTTAGGTCACTCTACTAATGGATACACAACTATTACTCGCTATTTTGTCTTTTGCCTTTGTGACCTCCATCACACCAGGGCCGAATAATTTAATGCTCTTAGCCAGTGGGGCGAACTTTGGTTTTAAACGTACCATTCCGCATATGCTGGGGATTTCTTTGGGCATGGCGGTATTGCTATTGTGCATTTTGGCGGGCTTGGGGACTTTATTTACGCAGCTTCCATTGGCTCAGACCGCTTTAAAAGTGCTAGGGGCGGCCTATTTATTATGGTTAGCGGCAAAAATTGCCTTGGCTCCGGTGGGCGAACTCAAAGGACGAGAAACCGGCAATGCTAAACCTAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGTATCGCCCTGTTTGAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 127188-125495 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB904791.1 Thiofilum flexile DSM 14609 A3IKDRAFT_scaffold_5.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 127187 28 100.0 36 ............................ GGGCTTTATTAAACAGAGAGTCGTTCTCGCAACAGA 127123 28 96.4 36 ..............A............. ATGATTGAAAAGAGCGTAGTCACTGAGACTGACTTA 127059 28 92.9 36 ............T.A............. TTTTTGCAACGCAGCAAGATTGGCAGCCATCTAAAT 126995 28 100.0 36 ............................ ACCAGACTCGCGCCGTGCTTCAGCACGAGCCATGTA 126931 28 100.0 36 ............................ TTAAGTATTTTACGGCGAGGAGTCGACCATCAAATT 126867 28 96.4 36 ..............A............. ACCAGACTCGCGCCGTGCTTCAGCACGAGCCATGTA 126803 28 100.0 36 ............................ ATCTGTCTTCTTGCGGGTTTGGTTACTGGCAACGTT 126739 28 100.0 35 ............................ CATGATGCGTTTAAATACGTCTGCCTGACAGTCAG 126676 28 100.0 36 ............................ GGATAATAGCCACTGCCAGATCAAGGGCAGGCTTTT 126612 28 100.0 36 ............................ ATCGGTTAGGCGTTCGGCTGCTTTCTCCCTGATGTA 126548 28 100.0 36 ............................ TAACGCTTGCTGCTCCACTGGCTATTATTGCTCTAG 126484 28 100.0 36 ............................ CTAGTAGAGGTTGCTAAAAACATGCCGCATCGCAAG 126420 28 100.0 36 ............................ CAAGAGAATTGCACTCCTTTTTAGAGGTGCAAACAA 126356 28 100.0 37 ............................ GGCGACGCAAAAAAATAGCGGGACTGTCAGTGGGCGG 126291 28 100.0 36 ............................ GAGTTAGTCATGGCGTTGATAGCATGTAAGCACTGT 126227 28 100.0 36 ............................ ACGGCTCCCACCAATGCCCAATACCGAACTATTGAC 126163 28 100.0 36 ............................ CTGTCTCAGCAAAGTGTCGTTTAAAAACCTATTCAA 126099 28 100.0 36 ............................ GCGCGGAATGGCATATGTGCCGGAGCTAAGGATTTG 126035 28 100.0 35 ............................ AGCTAGTCGCAATTGCTCCCGTAACGTTTTATTAA 125972 28 100.0 37 ............................ TTAGAGCCACAAGCAAACCAACACCTCGTGTGCCACT 125907 28 100.0 36 ............................ CGGGTTCGCGTGCTGCGTATTGGTTTTACTACCCTT 125843 28 100.0 36 ............................ ATCGACTAGCTCATCTCGATATTTAGCAATATCAGT 125779 28 100.0 36 ............................ TAGCGTTGTAATCGTGTTAGGAGCGATCAGCTCGCT 125715 28 100.0 36 ............................ CTACCTAGCAACGACGCAGCACTCAGACAATTGTCT 125651 28 100.0 36 ............................ TTCTCGCAATCGCCGGGGAGTAAAGGATACGCGCCT 125587 28 100.0 37 ............................ ACCTCGCACGAGCGCATTAGCGCTGCTGTAGTGGGCT 125522 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ===================================== ================== 27 28 99.5 36 GTCATAACCCCGCATGGGGATTCGTAAC # Left flank : TGAGAATCAGCTAGTTTTTTCTTCACTTTGAAGGGGCATGGAGGGTTAGAGTGCGGTTTTTAGTGCCATAACCCCGCATGGGGATTCGTAAGCGCCGCCGCTGGCATCCATCTCGTCATAACCCCGCAAGGGGATTCGTAACGCGCGGCATGGCATATGTGCCTGAGCTGCGTATTTGGTCATAACCCCGCATGGGGATTCGTAACACGCCTTGAGACTCCCGATCCTGAGCTATTTAGCGTGTCATAACCCCGCATGGGGATTCGTAACATGATTTGATAACGATGTGAACTTTGATAACTGAATGTCATAACCCCGCATGGGGATTCGTAACTCGTTGCGTCTCCTTTGCGGCCTGAGCCTTGAGCACTGTCATAACCCCGCATGGGGATTCGTAACCTTTAGAGCCATACTTGTAAGCGGCCTGCTCAGCGNGTCATAACCCCGCATGGGGATTCGTAACTCGTTGCGTCTCCTTTGCGGCCTGAGCCTTGAGCACT # Right flank : CCCTGATTTCAACGTGTTTCTGGCTAAATACCGCTGTATCAGAGGAGTAAAATCTAACATAACTCATTGATGAATACACATCAACCCCCCGACTCAAATACTGCACTGGGGGTCGAAGTTCGCTTTGACATCCTCCCCGACCTAAAAGACGGGGATTCCTGCTGCCAGACGCTCATGTCCGAGCGCGAGAATGTTCTTAGCTGCATTGATATCTCTATCATGCGTTGCTCCACACTCAGAGCAAGACCATTCTCTTATTCGCAAGCCNNNTCTACCTTTNGGACTATTGGAGCCTATGCAGCCACAACACGAACANNCTTGGGTNGTGTACGATTCATTGACNTCTAAACACACACCTGACCGCGCACTCGCTTTGTATTTCAGTTGTGTCTTGAGTATGTGCCACCCTGCATCCAAGACGGATTTAGCCATCTTGGTTTTGGCTAGGGCTGAACTACTGACATTGCCAATGATGATTAAGCCGTTGTTTTTAACGACTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATAACCCCGCATGGGGATTCGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 14-985 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB904783.1 Thiofilum flexile DSM 14609 A3IKDRAFT_scaffold_42.43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 14 37 100.0 35 ..................................... TAGCCATCGCTCTTGAGCAGGTGTTAATTCCGACC 86 37 100.0 34 ..................................... ATGCCACACCTCCTGCCATAAGCTGAGCGCGTGT 157 37 100.0 37 ..................................... TGATTAAATCCAGCTAGCCCTATAGCTACCACTAAGC 231 37 100.0 35 ..................................... CTCTTTCGGACATTTAATTCAATCCTCCTTTTCGC 303 37 100.0 34 ..................................... TTTTAGCGCTCTAGTAATTAGGGCGCAATAAAGG 374 37 100.0 37 ..................................... CGCATTGGTTATAGATAAATAAAGCAAATGCGTTGAG 448 37 100.0 34 ..................................... ATCGGTGGTCATGTTTAGCAAAAGCAAGGCCATC 519 37 100.0 35 ..................................... ATGTTCGCGTCCTCGGTTTAGTTTAAATGCACATG 591 37 100.0 34 ..................................... ACAACATACGGCTGCTGCGACCTGTGCGGCGCTG 662 37 100.0 34 ..................................... TGGAGCAGGTTAGCGGCCTCAGCCATATCAGTAC 733 37 100.0 36 ..................................... ATCGGGTGGTAATGCGTATTGAGCCTCTAGCTCAGG 806 37 100.0 33 ..................................... AAGGTGGGGTTAATATGGAAGATACTCCGCAAA 876 37 100.0 36 ..................................... AAATCGCCCTGTCCATGCCCCAAACCTCCAGCACCC 949 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 14 37 100.0 35 ATTCTCCCAGCTAATTAAGTTGGGAGTGGATTGAAAC # Left flank : CACGGTTAGCTCCA # Right flank : CANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTCCCAGCTAATTAAGTTGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [8.3-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 2 1532-3765 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB904783.1 Thiofilum flexile DSM 14609 A3IKDRAFT_scaffold_42.43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================================================================================================ ================== 1532 37 100.0 36 ..................................... CACCGATTAGTGGTGGTTGTGGCGATGGTGTTATCG 1605 37 100.0 34 ..................................... CGCTAACATTATAGGCGCTCTCGATTTCGAGCGG 1676 37 100.0 35 ..................................... GCTGCGTCACTGTTTGCTGTGTTTTGCTGCGATGG 1748 37 100.0 35 ..................................... GTGCAGGTGGTGGGTTGTTATTCGTGGGTAGTCCC 1820 37 100.0 35 ..................................... GCTGCGTCACTGTTTGCTGTGTTTTGCTGCGATGG 1892 37 100.0 35 ..................................... GTGCAGGTGGTGGGTTGTTATTCGTGGGTAGTCCC 1964 37 100.0 36 ..................................... GTCGTCGCTATCGATTTCAGCGTCGCCCACGGTTTC 2037 37 100.0 35 ..................................... ATCGCTTGGTATCCTTAATCATTATGATTTTTCCT 2109 37 100.0 36 ..................................... GTGACACCAAAAACGGCGAAAATAGAGTAATACCCT 2182 37 100.0 34 ..................................... ACTAGAGTCGCAATTGACTAGCCAGTTTTATGAC 2253 37 100.0 36 ..................................... CATTTTTTTGATCCTCAAAAACAGCTAGCCCACCGA 2326 37 100.0 35 ..................................... AGGCCGGGTTGTATCAGGATGATATTGTGATTCGC 2398 37 100.0 35 ..................................... TGGCTCAGCTTATAGGTTTTGCCGTTACGCAGATG 2470 37 100.0 37 ..................................... CTCAAATAGTAAATAACGGCCTCAATTCCCACCGCAC 2544 37 100.0 36 ..................................... AAAGGCGCTGCTGGCGGGCGCATATTTAACGCTAGC 2617 37 100.0 220 ..................................... ACTGGCAAACTTTGGCGCTAACTTAACAACCATCAGCTAAAGCTGAAGGGTTAGGCGTGGGTCGCAGAGGACTGAACGTCCACCCAATATCGCGCCCCACGCTTTTAATAGATTTTCATCCTATTACCTTAATTGCAATTGCAAAACTAAGCTTGCTAAAGCTAACCGTCTAAAGACGGTGGTTTTAACCTTGAAGACGGACTAATAAACCGACTCCAGC 2874 37 100.0 35 ..................................... GATTAATGACGGCATGGAAACTCCCCTAGGCGACC 2946 37 100.0 35 ..................................... AGATTAGGCGTTATTTTGAGGCTGGGTTAATACGG 3018 37 100.0 35 ..................................... AGCATTTTTATGTTTTTGATTGTGATGCCCGACAG 3090 37 100.0 34 ..................................... AACAGGGGCAATCGGAAAATAAGACATCACAAAA 3161 37 100.0 33 ..................................... AGATAAAAATGAACACCGCTGAAGCATCAGCGG 3231 37 97.3 34 ................................A.... CTTTTGTGTAACGTCGAACAATGAGCATCATTCT 3302 37 100.0 36 ..................................... TGTGCCACCGACTTGAGCACTCTTCTTGAATACGAC 3375 37 100.0 34 ..................................... ACTGAGGACGATTTCCATAATCCACACCCAAGGT 3446 37 100.0 36 ..................................... TTAAATGAGTTGTACGCTTTTGGTCTTCCTGTCATG 3519 37 100.0 33 ..................................... GCACTTTGCCCAACCCTTCGCGCGTTTTTCCGC 3589 37 100.0 34 ..................................... TGTAGTACTAGCACTCATGGCTTTAGCGGCATTA 3660 37 100.0 34 ..................................... TATTGCAGCGTATTGCAGACGGATCGTAGCCAAT 3731 35 83.8 0 ..........................A.--....CTT | ========== ====== ====== ====== ===================================== ============================================================================================================================================================================================================================ ================== 29 37 99.3 42 ATTCTCCCAGCTAATTAAGTTGGGAGTGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGA # Right flank : TTATATATAACACCTTATACATCAATTAGCATTTTATTAGTTAACTAAGTTGATAATATGCTATAATTTAAATACCTTAACTTTATCATTTACATTTCTACTCTATGAAACATCTACTTATCGATATTAGCGCCCACGGTTTTGGGCATCTGGCTCAGACAGCCGCTATATTAAATGCTCTACCATCATCAAACATAAAAATAACGATTCGCTCACTCGCACCAGAAAAAGTTTTACGTGATCGCATCCGGCATAATTTTGAATTAATACCTTATCAGCAAGATAATGGCATGATTATGCATGACGCATTAAATGTTGATGCGGAATCTAGCTTTCAATGGTATCAACATTTTCACGAAAATTATTCGCAAAAAGTTAATCAAGCGACGCAAGAACTACGCCTATTAAAGCCAGATTTAGTGTTTTCAGATATTCCCTACTTGAGTTTAGAGGCTGCTCACGCTTTAAATATCCCCAGTATTGCTTTATGCTCGCTCAAT # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.63, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTCCCAGCTAATTAAGTTGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 3 14615-14829 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB904783.1 Thiofilum flexile DSM 14609 A3IKDRAFT_scaffold_42.43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 14615 28 85.7 29 AA...........TT............. ACCAAAACCGTGAAGGTTGCAGAATTCCG C [14617] 14673 28 100.0 37 ............................ ACAACCCACAAGTATTGGAGCGAATGGGCGGAAGACT 14738 28 100.0 36 ............................ TGATGCACCCTTTCCGGTGATTTACGGGCGGCATTT 14802 28 96.4 0 .........T.................. | ========== ====== ====== ====== ============================ ===================================== ================== 4 28 95.5 34 GTCATAACCCCGCAGGGGGATTCGTAAC # Left flank : AGTGGATACCCACCCGCGCCGACCATAACCTTTTACGGGGATTAACTTCCTTAAAATGTAAAGAGGGATGCAGTGGGTTTTCCCGCAAGAGTTGATAGTTTCGGCGGGCGAGTTGGCGAATATACTCTGGTAATTGACGATAAGTAGACCAGAAACTACGGGCAGCGGCGTGTTTCATCGAAAACGTAATTTGCCAGCATCATAGTCTTGTTGAGCTTCGTCTAGCAAAGAATCAAGTTTTCCCGCTTCCGCATCGGCAGCGATTTGCTCATCCCATGTCTGAGCGGCTTCTAATTCATTAAGACGTTCTAATAACGCTTTGATTTTGTCCAGACTGATAATAACAGCCGTTTGTTGTCCTTTGGTATCAAGGACATATTGAGGGTGAAGGTCATTAAGGGTTAGAGCATGCATTAGTATTCTATCCAAAAATCCATCAGTTTATCCCACCTCTACGGGGGATACGGCTACATCAGATAATAGCATACGCCCCAGCAGGG # Right flank : CCCCTGATCTCAGCGCATATTGTCCTCAACACACCGCGACCAGACAGGTAAATTTCAGCTTAAACCCATTGATGTACACACATCAACCGCATCACTTTAATTACCCGCTAGCGACTGTATGGCAACCTCAGGCGCTACAGATACGATTTTGAGCAACGCCACGGCGGGGCCTGTAGGGTAGCGGCGGTGTTGCTCCCAGTTTTGTAGGGTTCTAGCACTGATCCTGATGAGTTTGGCAAACTCTTGTTGGGATAATCCGGTCTTTTCACGAATACCTTTCACATCTATCGCCTCTATAGTAAAGCGGCGACTGGCGGGCATTTCGTTTTTGGCAATGGCTTTGGCTTCTTTTAGGCTCTGGACGAGATCATTAAACAGTTCGGTATCCATTAAAGCTCCTTGACTAATTCACGCAAGATAGCGGTTTCACGGTCGGTGAGGGTGTCTTTAGCGGATTTGGGGTAAGCAAGGAGCATGTAAATTTGGTGCTGTTCATTGAG # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATAACCCCGCAGGGGGATTCGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 4 15633-16941 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB904783.1 Thiofilum flexile DSM 14609 A3IKDRAFT_scaffold_42.43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 15633 28 78.6 36 .CGC.C.T......G............. ATAAGCGGGAAGTATTCGCAACCGTCGTCGTGTAGT 15697 27 92.9 37 .....-........A............. CCGTCGATATTTTAGATAGCCAGCAGGGAATACTTGC 15761 28 96.4 36 ..............A............. CGGGCAATACAATAAGGGTATTTACAATCCGCTAGA 15825 28 100.0 36 ............................ ACAAACCGAGCGCTACCTACGCCAACGCCGCACCAC 15889 28 100.0 36 ............................ CATTGCTACAGTGGCAAAATCACTAGGCTGATACTC 15953 28 100.0 36 ............................ AGCAGTGCAAATGAAGCCGAAACAGCCCGACTGGAC 16017 28 100.0 36 ............................ GCGGAAATATTCAGCAGGGCGCACCAACTAGCCAAG 16081 28 100.0 36 ............................ ATCGCGTCTCGCAACAAGCAGGCGATACAGTCTACT 16145 28 96.4 36 ..............A............. GTTATGACGTGTATCCCTAAAACTGACACGGGTACA 16209 28 96.4 37 ..G......................... ATGCTTGCGGGGTGGGGTCGGTAGCGGCCTGCGTAGC 16274 28 100.0 36 ............................ CGTCTTAAACAAGTTTCCGCAGTAAAATCTTCTGAC 16338 28 100.0 36 ............................ CTCCCGTGGTGGCAATCTCAACCCCGCCTAGATTGT 16402 28 100.0 37 ............................ CGCTATAGCCAGATAGCCAGTTATGGCATTCTAGGCG 16467 28 100.0 36 ............................ TTGAGTGGGTTGCTAACGTAACTATTAACCTAGAGC 16531 28 100.0 36 ............................ CATTTATCAATCAATCAAAAACGGAGTTAAAGACGT 16595 28 100.0 36 ............................ GAAAATGGAACTATAGTAGAAGTTATATACTTCCAA 16659 28 100.0 35 ............................ CGCTTTTATTGTTGTGCTTTGCATATCCGCGTTAA 16722 28 100.0 35 ............................ CAGATTTTACGCTATCAACTGACTCATCAAGCAAA 16785 28 100.0 37 ............................ GATTATTCTATCGTATGGCGAGATAGCCGCTATTGAT 16850 28 100.0 36 ............................ GCGCAGCGCCACAGGATCAATATTAGGACGCTGCTT 16914 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ===================================== ================== 21 28 98.1 36 GTCATAACCCCGCATGGGGATTCGTAAC # Left flank : CGGCGACTGGCGGGCATTTCGTTTTTGGCAATGGCTTTGGCTTCTTTTAGGCTCTGGACGAGATCATTAAACAGTTCGGTATCCATTAAAGCTCCTTGACTAATTCACGCAAGATAGCGGTTTCACGGTCGGTGAGGGTGTCTTTAGCGGATTTGGGGTAAGCAAGGAGCATGTAAATTTGGTGCTGTTCATTGAGCCAGTAGTAAATGGCTCGCATCCCTCCGCTTTTACCTTGACCCGCCAGAGAATAGCGAATTTTACGTATTCCACCCCCTCCCTTGATCAAGTTCCCGCGTTCTGGGTCGTCGATGAGGAGGTTTTGCAAGCCTCGATATTCCTCATCAGAGAGCAGCGCTAGGATTTGACGAGTAAAGGTCGGGGTTTCTATGAATTCCATGCTATACCTCAATGGCGTAGGACTCAAGGTTTATTCGCTGTGATGGGGTGTTCTGCTTTGGATAGTTCAGCGTTGGGCGGTTCATCTCCACGTATGCTGGGGA # Right flank : CCCCTGATCTCAGCGCATTTTGCCCACAACACACCGCGACCAGACAGGTGAATCTCAGCTTAACCCATTGATCTACACACATCAACCCCCTGGCTCTACTACTGCACTGGGGGTCGAAGTACTAACTTTTGCTCGCTTTAGCGAGTTCTTCATTAATCAACTCTCTTAAGCGAGCCTCTTGCTCCTTGGTAAAAATCGAACCGCTTGCATTTGCTGCAATTAAAAGGTCTGGATTTTCAAGGGTAAAAACAAGTCTCATCATGATTTCAGCATGCAAAGAACGATTGCTTGCTCTTGCAATTGCTTCAAGCCTTTCTCTTATTTCAGGCTCTAATCGTAACGAGTATGGCTGTGGTCTGATGTCAGTATTCATTTTTATATGATTTATTGGTAGCCAAAAAGATTCAATGAGTATTTTGGATTCCTATTGACTACTAAAAACTACTAAACAATAATGTAGTTATAAAGAATACTAAGGATTCGTCATGAACAACCAAAGA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATAACCCCGCATGGGGATTCGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 15-1488 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB904811.1 Thiofilum flexile DSM 14609 A3IKDRAFT_scaffold_68.69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 15 37 100.0 33 ..................................... TGGTTTGGTATGCCGCAAGTAGGACAATTTGGC 85 37 100.0 35 ..................................... ATCGCTATCAATTTTGAGCTTATGCACTACTACCT 157 37 100.0 36 ..................................... AGCATCCTCGATCACCTGATGAACAGTTAGTGCATT 230 37 100.0 34 ..................................... GGATGCAGTGGATCGTAATAAAGCACTAGCGCTC 301 37 100.0 34 ..................................... TCTTACTTCACCCTGCCCCCGTATAGAACTAGAC 372 37 100.0 35 ..................................... ACCACGTTTACTACCTTGGTTAACGCCATTAACTA 444 37 100.0 35 ..................................... GCCCTATCCCCAATACAACCAATCTAAGAATTGAA 516 37 100.0 36 ..................................... ATTTTATTGCGCCGACTTTAGTAGATCGGTAGCCGG 589 37 100.0 33 ..................................... CCCTTCTCCACTTATCAACCAATTGATATTTAC 659 37 100.0 36 ..................................... AGGGTTATAGGTGACATGGCGGTAAAGGGATAACAT 732 37 100.0 35 ..................................... AGGCGTGGAAGCGCGTCCCTTGCGGGTCATTACCC 804 37 100.0 34 ..................................... GCGCGAAAGCCGGCGGAATAGATAAATCAAATAG 875 37 100.0 35 ..................................... ACTCCCATCTCTGGCTCATACTCATCTAGTTTACC 947 37 100.0 35 ..................................... AGGCCCTATCAAATCTTGAGCGCCTGTAGATGCTC 1019 37 100.0 34 ..................................... AGGCCCTATCAAATCTTGAGCGCCTGTAGATGCT 1090 37 100.0 37 ..................................... TGGAAATGAAGCGAATTAGAGAACAAACCGCTGCCAT 1164 37 100.0 37 ..................................... TCATGAGGGCGTGTGATATTTCCGAGGGATCATCAGT 1238 37 100.0 33 ..................................... TCTAGCATTGTGCAATTACAAAATGATTTAAAA 1308 37 100.0 35 ..................................... ACCACGTGAACCGTTTAACGATGAAAACGACACAG 1380 37 100.0 35 ..................................... CACGCCTGAAACCACAGATTGATATGAGCCAGATG 1452 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 21 37 100.0 35 ATTCTCCCAGCTAATTAAGTTGGGAGTGGATTGAAAC # Left flank : TACCTAGCATTTGCA # Right flank : GT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTCCCAGCTAATTAAGTTGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [13.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA //