Array 1 243040-242235 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATLY010000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 667 NODE_4_length_360054_cov_68.6368, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 243039 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 242978 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 242917 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 242856 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 242795 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 242733 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 242630 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 242569 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 242508 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 242447 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 242386 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 242325 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 242264 29 96.6 0 A............................ | A [242237] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 262009-259172 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATLY010000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 667 NODE_4_length_360054_cov_68.6368, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 262008 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 261947 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 261886 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 261825 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 261764 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 261703 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 261642 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 261581 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 261520 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 261459 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 261398 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 261337 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 261276 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 261215 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 261154 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 261093 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 261032 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 260971 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 260910 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 260849 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 260788 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 260727 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 260666 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 260605 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 260543 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 260482 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 260421 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 260360 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 260299 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 260238 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 260177 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 260115 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 260054 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 259993 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 259932 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 259871 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 259810 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 259749 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 259687 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 259626 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 259565 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 259504 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 259443 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 259382 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 259321 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 259260 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 259199 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 47 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //