Array 1 77006-76620 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBS01000004.1 Cronobacter dublinensis strain SD28 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 77005 28 100.0 32 ............................ AGTAGCTGGCACGCCGGACACTACCGCTCTAC 76945 28 100.0 32 ............................ AGAACGGATCGCGTTGGTAGCGACCGAACAGC 76885 28 100.0 32 ............................ TTGAGAGCCATTTAAAAGGGGTGTCTCGATGA 76825 28 100.0 31 ............................ AAAAACAACCGGCTTATCGATTACCTGAACC 76766 28 100.0 32 ............................ GCAACAGGCAAGAGCACTGGCGTGACGGCCTC 76706 28 100.0 32 ............................ ACTGACGTCTCCGGGCTTCGCCCTCCGCGATC 76646 27 78.6 0 ...T.......TA........C-.C... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.9 32 GTTCACTGCCGCGCAGGCAGCTTAGAAA # Left flank : CCGGCGCTGATGGAATTAGAGGCCACGCGCTGGCGGGCAGGGTTACAGGATTACTACCAGAGCAGCGCAATATTACCCGTGCCTCAGGTGCAGGGCTGGCGGACCGTCTCGCGCGTACAGGTGAAAAGCAATCCAGAACGCCTGATGCGTCGCTCGGTGCGCAAAGGCTGGCTGACGGAAGAAGCCGCGCGGCAACGGCTCTGCGATTTACACGAGCAACAGACCTCTCTGCCGTGGATTCAGGTTAAAAGTCTCTCCAGCGGTCAGTACTACAGGATCTTTATCCAGCACGGCGAGCTGCTGACCGCGCCCGTCAGCGGCGAGTTCAGCAGTTATGGATTAAGCCCCAACGCGACGATTCCCTGGTTCTGACCTTTTTTAAAATGCCTCGCTAACCTGTTGATTTTTATCATGCGCTGGCGAGGCGCTAAAAAAGGGTATATGGCATCAAAATGCATAACAGGCTTTTAAAAACAAAGGACTGATTTATTTCAGCGTTA # Right flank : TCGTATTACTGCTCCGCCAGACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACTGGAAGATGCAACGCCGAGATTTTATTAAGTACACCGCCGCGCTGGGCGCGTTAAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCGGCGCTGCCCATTCCCGCGCTGCTGACGCCTGACGCCAGCAGTCGCATTCAGCTCACGGTGCAGGCAGGCAAAACCGCGTTCGCCGGGAAAAATGTCACTACCTGGGGCTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCAAGCCGGTAAATGTCGAGATCCGCAATACGCTCGCCGAAGAGACGACGGTGCACTGGCACGGGCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCGTCATCGCGCCGGGGCAGACCCGCAGCGTGAGCTTTACGCCGGAGCAGCGCGCCGCGACGTGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGCAGGCAGCTTAGAAA # Alternate repeat : AGTTCACTGCCGCGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 88331-85477 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBS01000004.1 Cronobacter dublinensis strain SD28 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 88330 28 100.0 32 ............................ TGCGAGCTATCAGGAAACCCTCGCAGATAAAG 88270 28 100.0 32 ............................ ATACGTCAATAACTGGCTGAGAACGAGAGACA 88210 28 100.0 32 ............................ TGTAGGCCGCACGTAAAGGGGCCATTTTTGTA 88150 28 100.0 32 ............................ GATATCGAACTGGAAAAGGCAGAGTCGTAGCT 88090 28 100.0 32 ............................ TCGCTTGCCATCTACAGAGGCGTTTGCAGCGG 88030 28 100.0 32 ............................ ACTGAGCGGACGTGAAAGTTCCGCACGAGATG 87970 28 100.0 32 ............................ GCTCGTGCAAAATTTGCGGCACTAAATTTACC 87910 28 100.0 32 ............................ GGTGCGCTAATTGTCGTTGTGCGCGTTGAGGC 87850 28 100.0 32 ............................ TCACGCATGCAATAGTCGGCCACGCGCCCCTT 87790 28 100.0 32 ............................ CCGAGATGGGATGGTATGCCTCGACATAAGCT 87730 28 100.0 32 ............................ GCATCAACTGATTGGACATGGCGTCCCATCCT 87670 28 100.0 32 ............................ AGATGAAGCAGGCCCATGTAGCTTATGTCGAG 87610 28 100.0 32 ............................ CGAAGGACGGCGTTGTTGTGTATGCCCGTGGC 87550 28 100.0 32 ............................ CAAAATGCTGCAATTTGACCTGGACTGGTCAC 87490 28 100.0 32 ............................ ACTCATCATATGTCAGAGAGCTTTTATAATAG 87430 28 100.0 32 ............................ AGAAGCCGCAGGGCGTTTCGCAAGTCTTAAAC 87370 28 100.0 32 ............................ TGTGAGGTGGCGGCTGTTTTGCGTCTGTGATT 87310 28 100.0 32 ............................ ACTGAGCGACGGCCAGACGCCGCGCGGCGCCA 87250 28 100.0 32 ............................ CACAAGCGCCAATCGCCAGTATCTGGGCGAGT 87190 28 100.0 32 ............................ TGGCTGCTGTCGCTCGCCGCTATCTGCCGGAC 87130 28 100.0 32 ............................ CCCGACCCAGAATTTAACCGGCGCCGCCACAA 87070 28 100.0 32 ............................ TTTAGCCCGGCTTTACCGGGCTTCATCTTAAG 87010 28 100.0 32 ............................ TGCGCGCGCCAATTGAGTAAACACACAGAAAC 86950 28 100.0 32 ............................ AGACACAGTGTTTAACGGCCAGTTGGATTTCA 86890 28 100.0 32 ............................ TGATGGGGGAAGCGCAGCATGAACCTGGAAAA 86830 28 100.0 32 ............................ ACCAGCTGCGACTGAATATCGACGGCATCACT 86770 28 100.0 32 ............................ TGACTATTGGCTCAAGAGACAAGATGTTTCTT 86710 28 100.0 33 ............................ TTTCTGCTCATGCGCAAGCGCCTTCTCTATCCA 86649 28 100.0 32 ............................ TCAGAACGGCGCAGGGCCGAGTAATTCACGAA 86589 28 100.0 32 ............................ CAGCACAGCGAGCGCCACGGCTCGGCAAGTGA 86529 28 100.0 32 ............................ TGACTCGCACCGACAGTGCGCGGACTATTTCA 86469 28 100.0 32 ............................ TCGACTACAAGCCATAATCTCCTGCACCTGGC 86409 28 100.0 32 ............................ ATTAACACCTCGCCAGCTCGGAACAAACCCGA 86349 28 100.0 32 ............................ GCAGAGGAATCTATGGCGCACACGAAAGACCC 86289 28 100.0 32 ............................ GGTGAGATAGCTACAGATCCGTTCGTTATCCT 86229 28 100.0 32 ............................ TGAACAGCTAACAGCCTGTCGCGCCGCAGAGG 86169 28 100.0 32 ............................ TTTTGCTGCGCTGAAATGAGTTGAGCAACATC 86109 28 100.0 32 ............................ GGGTCCGATTCCAGTAGCGCGTTGAAAGACGG 86049 28 100.0 32 ............................ AACAGCAAACAACAGGCGCGCGCCGTTACTAA 85989 28 100.0 32 ............................ TGACGGTCTCCGTCGTGTGTAATCACAATCTG 85929 28 100.0 32 ............................ CGAAATACATATACCTTACCTTCCTCAGGATC 85869 28 96.4 32 ..................C......... ACCGACGCATTCCTGCGCGAAGTGCGGGCTCA 85809 28 100.0 32 ............................ TGGCACGCAGTTCATCGCCGCTGCGAAATATG 85749 28 100.0 32 ............................ ACGAACGGACGCAACACGACTTTATCGACGTC 85689 28 100.0 33 ............................ AGTAAAAAAAGCCGCCGCGCGGGCGGCAAAAAT 85628 28 100.0 37 ............................ AAACCGCCCTGCACCGGGGCTCTGGCTGAAATGCCTG 85563 28 100.0 32 ............................ TAATACGAAAAAGGCCCGCCGAAGCGAGCCTT 85503 27 92.9 0 ....................-...A... | ========== ====== ====== ====== ============================ ===================================== ================== 48 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAATACAAAAACAGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTCAGCGCAAAACTGTTGGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCGATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGATATTTCGCCCTTCCATTGGCCGTTAAATGCCCATCTCAGGCGGCTTTGCGCCAACGTCAGAGGTAAGACAGCGAACAAAAAGGCTGTCTTTAACAGAGGAGCGAAAAACCCGCAGGTTGATATCCCGAAGGCGGAACAATAAAGAGGTTTAAAATAAAACCACCGATGTGAAATCTGCCGCATAAGACCCTTTTTTACCGCCCGTCCTTAAGGCATTGATTTTTATAGCGCTCGACTTTCACGTTAAAAAAAGGGTTTCAGGAAGAAAAAGAAGAAATTTGTTTTTAATTCAAACAACCTGGTAATATTCGCTCTT # Right flank : ATGCCGTTTTTAATGCCATCATCGAAGGCAAAAGACCATACCTAAAGATTAATGAATAAACTTCTTTATTTATTCGTGCCCTTTGAGGTGGCGGAGTGCATGACGGCCGTGCACCTGGGCTGATATATTTTAAAAATTAAAGGAATGTCACGATATGGTGTCTTAACTAATCACATAATAACGCGTTATTTATATCTCTCTGTGATATTTCCCCGGTAATTATATAACGGAATTATAAGATGGATCGAAATTCTGTCACGCCGTCTGATTTAAAAACGATTCTCCATTCAAAGCGCGCGAATATTTATTATCTCCAATACTGCCGGGTGCTGGTTAATGGCGGCCGGGTGGAATATGTCACTGATGAAGGGAAAGAATCGCTTTACTGGAATATCCCCATTGCCAATACCACGGTGGTGATGCTCGGCACCGGGACATCGGTTACGCAGGCGGCTATGCGGGAATTCGCCCGGGCGGGCGTGATGGTGGGTTTTTGTGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 838059-837176 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBS01000002.1 Cronobacter dublinensis strain SD28 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 838058 29 100.0 32 ............................. TACCGTCAGTGTTTCCTCTCCGCGGATCTTTT 837997 29 100.0 32 ............................. CGCAACAGCTTCGGCTCTGTGAATAACAACCG 837936 29 100.0 32 ............................. GCGGCGGCTTTGTCGAGAGCATCACCACCAAT 837875 29 100.0 32 ............................. GCGTTACGTGCCTGCTCATCAGGAAGCCCCGC 837814 29 100.0 32 ............................. GAAGCGGAGTATTTATGATATCGATACGTCTA 837753 29 100.0 32 ............................. ATTGTCGATCTGAGCTGGAGGGGTTTCAGGAG 837692 29 100.0 32 ............................. TTCGATAACCTGCTCAGACATTGGAACGACGT 837631 29 100.0 32 ............................. TTCGATAACCTGCTCAGACATTGGAACGACGT 837570 29 100.0 32 ............................. AGTTAGTCAACTATACAAAATTACCGCTGGCG 837509 29 100.0 32 ............................. AGAGTAATGAATGACCTGGCCGCGAAAGGGCT 837448 29 100.0 32 ............................. TTCAGTTAGCGTAGTGCTCATCGTCACGCCTC 837387 29 100.0 32 ............................. GCCGGTTCACTGAACAAAGTAGAATTGATTGG 837326 29 96.6 32 ......T...................... CCGACCTCTCTCCGCCGCTGTTTAATTCTCTG 837265 29 100.0 32 ............................. TGACGTTCAAGCGCGGCATAGTGCGGCGCGCT 837204 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACGTGCTGACCATCACCAGCGAGATGAAACAGCTCAATGGCAAAAGCGGGGTGCTGAGCCAGGTGATTACGCTGGGGCCCGAAGACGAGGTAGTCGCCGACGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGAAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTAGTCATGGACTTCCACTTACCGAAAGCGAACAATCCGGTAGATGTTACCGGCCCGAAAGCATGCTGAAAAAAGGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAAGCTTAAAGAAAACAACAGGTTGTTTTTAGA # Right flank : AACCCGTTTGCCGCGGCGCAAAAAACTCATCTCTGTCACTCGTGCCAGCCCGAATATCCAGCTTAACCACCCGGCAGGGCAACCCCTCCCAAACCCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTTGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAAACCCAAAATAACGGACTGGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGATGAATAACATTCAGTACCGCGAATCATTAACGGCGCTGCATCATATTAAGGCGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTACTGACGCATCTGGATTTCGATCATGCGGGCGGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //