Array 1 4014-6082 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPY01000020.1 Vibrio cholerae strain A120502W2 NODE_24_length_42123_cov_26.878759, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4014 28 100.0 32 ............................ ACGCTGAAAGCTTTTGTTCATCGCGTCGTCTG 4074 28 100.0 32 ............................ ACAGCGCAAGCCTTTAGTCGGGTTGGGTGGCT 4134 28 100.0 32 ............................ ATAGAATAAATGCGGCGGCGAAGCGGCATCAT 4194 28 100.0 32 ............................ AGAATGTCATCGCGCACGGGTACGATTTGATT 4254 28 100.0 32 ............................ GATATTGAGCCTGTCTCTCAAGTGCTAGAGCG 4314 28 100.0 32 ............................ AGCTGCGTGCAAGTCCACGCCATCTTCTAGTG 4374 28 100.0 32 ............................ GTCAATATAAAAGGTGAGCTGCTTTGCATGTC 4434 28 100.0 32 ............................ AACGACTTCACACTCGATCCAAGAGTGCTGAA 4494 28 100.0 32 ............................ TTACAAGTCTCCAAGTAACCAAAGCCTGCAAA 4554 28 100.0 32 ............................ TATCTGATGCGGTTTTTAACAAGGATGTAAAT 4614 28 100.0 32 ............................ ACAAAAAGCGGAATCTGCTACACAAAGCGTGA 4674 28 100.0 32 ............................ TTCTTCAATAGTTTTCGTTCTAAATACTTGAT 4734 28 100.0 32 ............................ GCTATCTGCATCACGGCGCGGCGTACCCACTC 4794 28 100.0 32 ............................ GCAAGGCGCGCCACTCAGGGCGGGAGATTGGG 4854 28 100.0 32 ............................ TTAAAGTTAAAAGTTGTTCAGGCGATGGGTGA 4914 28 100.0 32 ............................ GATCCCAGGCTCGTTTGACCAGCCCGCTAAAT 4974 28 100.0 32 ............................ TTCGCCGCTGCAGTCGTTTGGCACGAGAAATA 5034 28 100.0 32 ............................ AGAAGGCTGGGAACTGCATGACAGTAAGATTT 5094 28 100.0 32 ............................ CGTCTGTGCGTTGACGAACTCGATGCGACCAC 5154 28 100.0 32 ............................ AAAAACTTGGAATCTGTCCGCGACTGGAACAA 5214 28 100.0 32 ............................ TTGGGATGTGGCCGCCGCCGCCAGAACGCTGC 5274 28 100.0 33 ............................ TGTTATTGACCTCGCGAGTTGGGCGGCAAGTTT 5335 28 100.0 32 ............................ TATTGTCGGGTAACCTTCGCTACATCGATATA 5395 28 100.0 32 ............................ GCTATCAAACTATACTTTCAAGGTCAGCCAAC 5455 28 100.0 32 ............................ TGTACGGTCAACGGTGCGACGCAAGCCGATGC 5515 28 100.0 32 ............................ GGCACAGTCATTGGCGGCAAGTATTTGCTTAC 5575 28 100.0 32 ............................ TCAGAGTCAGATAAGAAGAGAAACGAAGAAGC 5635 28 100.0 32 ............................ TTTTCGGTATTACACCGACTGCAATCGATTGG 5695 28 100.0 32 ............................ TTACCGATAAGCCGGACACGATTAAAAGACAC 5755 28 100.0 32 ............................ GGTACGGTCATTTGACCAGGTGAGTCGTCCAT 5815 28 100.0 32 ............................ TAGCTAACGCTCACAAGGGCTTATACGCACTG 5875 28 100.0 32 ............................ TTTGGTTTGCACTCGGTAATGCAGAGTTGTTA 5935 28 100.0 32 ............................ AGCTCAGGACAAAGGCGCGCCTTTCCCGTTGC 5995 28 100.0 32 ............................ TTCATGGAATGGATTGATACATCAACAACTCC 6055 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGTCAGCGTTGTGTAACTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAGCGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AAGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCATCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTGCGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCGGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGACCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //