Array 1 48908-51193 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDSR01000008.1 Salmonella enterica subsp. enterica serovar Kentucky strain 49 NODE_8_length_284365_cov_31.6398, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48908 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 48969 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 49030 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 49091 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 49153 29 100.0 32 ............................. CCTTTCGTGTCGTCTGCCTCGCTGGTTACCGT 49214 29 100.0 32 ............................. CCTCGCATAAACGAGGCTCGCTCTGAATCTGG 49275 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 49336 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 49397 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 49458 29 100.0 32 ............................. TCTCGCAAACATCCTTCAGGCAAAACCACGGT 49519 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 49580 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 49641 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 49702 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 49763 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 49824 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 49885 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 49946 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 50007 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 50068 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 50129 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 50190 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 50251 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 50312 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 50373 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 50434 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 50495 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 50556 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 50617 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 50678 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 50739 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 50800 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 50861 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 50922 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 50983 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 51044 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 51105 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 51166 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 38 29 97.8 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 68826-70990 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDSR01000008.1 Salmonella enterica subsp. enterica serovar Kentucky strain 49 NODE_8_length_284365_cov_31.6398, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68826 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 68887 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 68948 29 100.0 32 ............................. GCATTGATGTAACACTCCTTAACTGCGGCGGC 69009 29 100.0 32 ............................. CGGTCTGTAGTCGCATGGCACGTCCTTCGGGG 69070 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 69131 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 69192 29 100.0 32 ............................. ACCATGCATTGAAATGCCAGATGAAAATTGGG 69253 29 100.0 32 ............................. CTGCGGGTATCAAAGCGTTCAACGTTCTTGTC 69314 29 100.0 32 ............................. TTTCTGACTTTTGAGGGGGATATTTAGACGGG 69375 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 69436 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 69497 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 69558 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 69619 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 69680 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 69741 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 69802 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 69863 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 69924 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 69985 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 70046 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 70107 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 70168 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 70229 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 70290 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 70351 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 70412 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 70473 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 70534 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 70595 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 70656 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 70717 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 70778 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 70839 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 70900 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 70961 29 100.0 0 ............................. | A [70988] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //